CX289101

Overview
NameCX289101
Unique NameCX289101
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length417
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: RAB8A_RAT (Ras-related protein Rab-8A OS=Rattus norvegicus GN=Rab8a PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 7.450e-19
Identity = 48/70 (68.57%), Postives = 50/70 (71.43%), Query Frame = 2 
Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            L KLLLIGDSGVGK+C+L R                  KIRTIELDGKRIKLQIWDTAGQERFRTITTAY
Sbjct:    8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 77
[Close]
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: RAB8A_PONAB (Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8A PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.450e-19
Identity = 48/70 (68.57%), Postives = 50/70 (71.43%), Query Frame = 2 
Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            L KLLLIGDSGVGK+C+L R                  KIRTIELDGKRIKLQIWDTAGQERFRTITTAY
Sbjct:    8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 77
[Close]
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: RAB8A_MOUSE (Ras-related protein Rab-8A OS=Mus musculus GN=Rab8a PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 7.450e-19
Identity = 48/70 (68.57%), Postives = 50/70 (71.43%), Query Frame = 2 
Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            L KLLLIGDSGVGK+C+L R                  KIRTIELDGKRIKLQIWDTAGQERFRTITTAY
Sbjct:    8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 77
[Close]
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: RAB8A_MACFA (Ras-related protein Rab-8A OS=Macaca fascicularis GN=RAB8A PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.450e-19
Identity = 48/70 (68.57%), Postives = 50/70 (71.43%), Query Frame = 2 
Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            L KLLLIGDSGVGK+C+L R                  KIRTIELDGKRIKLQIWDTAGQERFRTITTAY
Sbjct:    8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 77
[Close]
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: RAB8A_HUMAN (Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8A PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.450e-19
Identity = 48/70 (68.57%), Postives = 50/70 (71.43%), Query Frame = 2 
Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            L KLLLIGDSGVGK+C+L R                  KIRTIELDGKRIKLQIWDTAGQERFRTITTAY
Sbjct:    8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 77
[Close]
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: RAB8A_CANFA (Ras-related protein Rab-8A OS=Canis familiaris GN=RAB8A PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.450e-19
Identity = 48/70 (68.57%), Postives = 50/70 (71.43%), Query Frame = 2 
Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            L KLLLIGDSGVGK+C+L R                  KIRTIELDGKRIKLQIWDTAGQERFRTITTAY
Sbjct:    8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 77
[Close]
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: RAB8A_BOVIN (Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.450e-19
Identity = 48/70 (68.57%), Postives = 50/70 (71.43%), Query Frame = 2 
Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            L KLLLIGDSGVGK+C+L R                  KIRTIELDGKRIKLQIWDTAGQERFRTITTAY
Sbjct:    8 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 77
[Close]
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: RAB8_DISOM (Ras-related protein Rab-8 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.731e-19
Identity = 47/70 (67.14%), Postives = 50/70 (71.43%), Query Frame = 2 
Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            L KLLLIGDSGVGK+CLL R                  KIRT+ELDGK+IKLQIWDTAGQERFRTITTAY
Sbjct:    8 LFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTVELDGKKIKLQIWDTAGQERFRTITTAY 77
[Close]
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: RAB8A_CHICK (Ras-related protein Rab-8A OS=Gallus gallus GN=RAB8A PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.271e-18
Identity = 48/70 (68.57%), Postives = 49/70 (70.00%), Query Frame = 2 
Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            L KLLLIGDSGVGK+C L R                  KIRTIELDGKRIKLQIWDTAGQERFRTITTAY
Sbjct:    8 LFKLLLIGDSGVGKTCALFRFSEDAFNATFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 77
[Close]
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: YPT1_PHYIN (Ras-like GTP-binding protein YPT1 OS=Phytophthora infestans GN=YPT1 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.660e-18
Identity = 48/70 (68.57%), Postives = 50/70 (71.43%), Query Frame = 2 
Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQERFRTIT++Y
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 77
The following BLAST results are available for this feature:
BLAST of CX289101 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
RAB8A_RAT7.450e-1968.57Ras-related protein Rab-8A OS=Rattus norvegicus GN... [more]
RAB8A_PONAB7.450e-1968.57Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8... [more]
RAB8A_MOUSE7.450e-1968.57Ras-related protein Rab-8A OS=Mus musculus GN=Rab8... [more]
RAB8A_MACFA7.450e-1968.57Ras-related protein Rab-8A OS=Macaca fascicularis ... [more]
RAB8A_HUMAN7.450e-1968.57Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8... [more]
RAB8A_CANFA7.450e-1968.57Ras-related protein Rab-8A OS=Canis familiaris GN=... [more]
RAB8A_BOVIN7.450e-1968.57Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A ... [more]
RAB8_DISOM9.731e-1967.14Ras-related protein Rab-8 OS=Discopyge ommata PE=2... [more]
RAB8A_CHICK1.271e-1868.57Ras-related protein Rab-8A OS=Gallus gallus GN=RAB... [more]
YPT1_PHYIN1.660e-1868.57Ras-like GTP-binding protein YPT1 OS=Phytophthora ... [more]

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Properties
Property NameValue
Genbank descriptionC02009B06SK IF1 Citrus clementina cDNA clone C02009B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289101 ID=CX289101; Name=CX289101; organism=Citrus clementina; type=EST; length=417bp
AGAGAGAGCAAGAGAGAGAGAGAGACCGAGTCCCCCCCCCCCCCACGCAC
GCACAGACTCTCTGTTCACAAGCAATCTCTCCCATGTTACCGGCGACTTG
TTAAATCTTCTCACCCTTACAGTTTCAGAAAGAGAGTAATTGATTTGTTG
TGAGAGAGAAGAGATGGCTGCACCACCAGCGAGGGCACGTGCTGATTATG
ATTACCTCATCAAGCTTCTTTTGATCGGTGACAGCGGTGTGGGGAAGAGT
TGTTTGCTTCTGCGATTTTCAGATGGTTCCTTCACAACCAGTTTTATTAC
TACTATTGGCATTGATTTTAAGATAAGAACCATCGAGCTTGATGGAAAAC
GGATTAAATTGCAAATTTGGGATACAGCTGGTCAGGAACGGTTTCGAACC
ATCACAACAGCTTACTA
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