CX289101 | Citrus Genome Database

Overview


Name	CX289101
Unique Name	CX289101
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	417

Libraries


Library Name	Type
IF1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: RB11B_MOUSE (Ras-related protein Rab-11B OS=Mus musculus GN=Rab11b PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 3.960e-12
Identity = 37/70 (52.86%), Postives = 44/70 (62.86%), Query Frame = 2

Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            L K++LIGDSGVGKS LL R                    R+I++DGK IK QIWDTAGQER+R IT+AY
Sbjct:   11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAY 80

[Close]

BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: RB11B_HUMAN (Ras-related protein Rab-11B OS=Homo sapiens GN=RAB11B PE=1 SV=4)

HSP 1 Score: 70.0922 bits (170), Expect = 3.960e-12
Identity = 37/70 (52.86%), Postives = 44/70 (62.86%), Query Frame = 2

Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            L K++LIGDSGVGKS LL R                    R+I++DGK IK QIWDTAGQER+R IT+AY
Sbjct:   11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAY 80

[Close]

BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: RB11B_DISOM (Ras-related protein Rab-11B OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.960e-12
Identity = 37/70 (52.86%), Postives = 44/70 (62.86%), Query Frame = 2

Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            L K++LIGDSGVGKS LL R                    R+I++DGK IK QIWDTAGQER+R IT+AY
Sbjct:   11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAY 80

[Close]

BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: RB11B_BOVIN (Ras-related protein Rab-11B OS=Bos taurus GN=RAB11B PE=2 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 3.960e-12
Identity = 37/70 (52.86%), Postives = 44/70 (62.86%), Query Frame = 2

Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            L K++LIGDSGVGKS LL R                    R+I++DGK IK QIWDTAGQER+R IT+AY
Sbjct:   11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAY 80

[Close]

BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: RB11A_RAT (Ras-related protein Rab-11A OS=Rattus norvegicus GN=Rab11a PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 3.960e-12
Identity = 37/70 (52.86%), Postives = 44/70 (62.86%), Query Frame = 2

Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            L K++LIGDSGVGKS LL R                    R+I++DGK IK QIWDTAGQER+R IT+AY
Sbjct:   11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAY 80

[Close]

BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: RB11A_RABIT (Ras-related protein Rab-11A OS=Oryctolagus cuniculus GN=RAB11A PE=2 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 3.960e-12
Identity = 37/70 (52.86%), Postives = 44/70 (62.86%), Query Frame = 2

Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            L K++LIGDSGVGKS LL R                    R+I++DGK IK QIWDTAGQER+R IT+AY
Sbjct:   11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAY 80

[Close]

BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: RB11A_PONAB (Ras-related protein Rab-11A OS=Pongo abelii GN=RAB11A PE=2 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 3.960e-12
Identity = 37/70 (52.86%), Postives = 44/70 (62.86%), Query Frame = 2

Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            L K++LIGDSGVGKS LL R                    R+I++DGK IK QIWDTAGQER+R IT+AY
Sbjct:   11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAY 80

[Close]

BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: RB11A_PIG (Ras-related protein Rab-11A OS=Sus scrofa GN=RAB11A PE=2 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 3.960e-12
Identity = 37/70 (52.86%), Postives = 44/70 (62.86%), Query Frame = 2

Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            L K++LIGDSGVGKS LL R                    R+I++DGK IK QIWDTAGQER+R IT+AY
Sbjct:   11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAY 80

[Close]

BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: RB11A_MOUSE (Ras-related protein Rab-11A OS=Mus musculus GN=Rab11a PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 3.960e-12
Identity = 37/70 (52.86%), Postives = 44/70 (62.86%), Query Frame = 2

Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            L K++LIGDSGVGKS LL R                    R+I++DGK IK QIWDTAGQER+R IT+AY
Sbjct:   11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAY 80

[Close]

BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: RB11A_HUMAN (Ras-related protein Rab-11A OS=Homo sapiens GN=RAB11A PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 3.960e-12
Identity = 37/70 (52.86%), Postives = 44/70 (62.86%), Query Frame = 2

Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            L K++LIGDSGVGKS LL R                    R+I++DGK IK QIWDTAGQER+R IT+AY
Sbjct:   11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAY 80

The following BLAST results are available for this feature:

BLAST of CX289101 vs. ExPASy Swiss-Prot

BLAST of CX289101 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186


Match Name	E-value	Identity	Description
RB11B_MOUSE	3.960e-12	52.86	Ras-related protein Rab-11B OS=Mus musculus GN=Rab...	[more]
RB11B_HUMAN	3.960e-12	52.86	Ras-related protein Rab-11B OS=Homo sapiens GN=RAB...	[more]
RB11B_DISOM	3.960e-12	52.86	Ras-related protein Rab-11B OS=Discopyge ommata PE...	[more]
RB11B_BOVIN	3.960e-12	52.86	Ras-related protein Rab-11B OS=Bos taurus GN=RAB11...	[more]
RB11A_RAT	3.960e-12	52.86	Ras-related protein Rab-11A OS=Rattus norvegicus G...	[more]
RB11A_RABIT	3.960e-12	52.86	Ras-related protein Rab-11A OS=Oryctolagus cunicul...	[more]
RB11A_PONAB	3.960e-12	52.86	Ras-related protein Rab-11A OS=Pongo abelii GN=RAB...	[more]
RB11A_PIG	3.960e-12	52.86	Ras-related protein Rab-11A OS=Sus scrofa GN=RAB11...	[more]
RB11A_MOUSE	3.960e-12	52.86	Ras-related protein Rab-11A OS=Mus musculus GN=Rab...	[more]
RB11A_HUMAN	3.960e-12	52.86	Ras-related protein Rab-11A OS=Homo sapiens GN=RAB...	[more]

Pages

Properties


Property Name	Value
Genbank description	C02009B06SK IF1 Citrus clementina cDNA clone C02009B06, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX289101 ID=CX289101; Name=CX289101; organism=Citrus clementina; type=EST; length=417bp
AGAGAGAGCAAGAGAGAGAGAGAGACCGAGTCCCCCCCCCCCCCACGCAC
GCACAGACTCTCTGTTCACAAGCAATCTCTCCCATGTTACCGGCGACTTG
TTAAATCTTCTCACCCTTACAGTTTCAGAAAGAGAGTAATTGATTTGTTG
TGAGAGAGAAGAGATGGCTGCACCACCAGCGAGGGCACGTGCTGATTATG
ATTACCTCATCAAGCTTCTTTTGATCGGTGACAGCGGTGTGGGGAAGAGT
TGTTTGCTTCTGCGATTTTCAGATGGTTCCTTCACAACCAGTTTTATTAC
TACTATTGGCATTGATTTTAAGATAAGAACCATCGAGCTTGATGGAAAAC
GGATTAAATTGCAAATTTGGGATACAGCTGGTCAGGAACGGTTTCGAACC
ATCACAACAGCTTACTA