CX289101

Overview
NameCX289101
Unique NameCX289101
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length417
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: RAB12_CANFA (Ras-related protein Rab-12 (Fragment) OS=Canis familiaris GN=RAB12 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.378e-11
Identity = 32/69 (46.38%), Postives = 45/69 (65.22%), Query Frame = 2
Query:  209 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            +++++IG  GVGK+ L+ R                  KI+T+EL GK+I+LQIWDTAGQERF +IT+AY
Sbjct:    7 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAY 75          
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: RAA1A_ARATH (Ras-related protein RABA1a OS=Arabidopsis thaliana GN=RABA1A PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.378e-11
Identity = 35/70 (50.00%), Postives = 43/70 (61.43%), Query Frame = 2
Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            L KL+LIGDSGVGKS LL R                    +T +++GK +K QIWDTAGQER+R IT+AY
Sbjct:   13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTTKVEGKVVKAQIWDTAGQERYRAITSAY 82          
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: RAB4_DICDI (Ras-related protein Rab-4 OS=Dictyostelium discoideum GN=rab4 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.718e-11
Identity = 30/70 (42.86%), Postives = 40/70 (57.14%), Query Frame = 2
Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            L+K ++IG   VGKSCLL R                    R +++ GK +KLQIWDTAGQERFR++  +Y
Sbjct:    7 LVKFIIIGSQSVGKSCLLFRFIDNKFKSQSTHTIGVDFSSRVVDIQGKNVKLQIWDTAGQERFRSVVISY 76          
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: YPT3_NICPL (Ras-related protein YPT3 OS=Nicotiana plumbaginifolia GN=YPT3 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.468e-11
Identity = 35/70 (50.00%), Postives = 42/70 (60.00%), Query Frame = 2
Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            L KL+LIGDSGVGKS LL R                    +++ +D K IK QIWDTAGQER+R IT+AY
Sbjct:   13 LFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKSLNIDNKVIKAQIWDTAGQERYRAITSAY 82          
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: ARA1_ARATH (Ras-related protein ARA-1 OS=Arabidopsis thaliana GN=ARA-1 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.468e-11
Identity = 32/70 (45.71%), Postives = 44/70 (62.86%), Query Frame = 2
Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            L K+++IGDS VGKS LL R                  + +++E++GK +K QIWDTAGQERFR +T+AY
Sbjct:   12 LFKIVVIGDSAVGKSNLLSRYARNEFSANSKATIGVEFQTQSMEIEGKEVKAQIWDTAGQERFRAVTSAY 81          
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: RAB26_HUMAN (Ras-related protein Rab-26 OS=Homo sapiens GN=RAB26 PE=1 SV=3)

HSP 1 Score: 65.4698 bits (158), Expect = 9.753e-11
Identity = 31/69 (44.93%), Postives = 46/69 (66.67%), Query Frame = 2
Query:  212 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXX-KIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            K++L+GDSGVGK+CLL+R                   + + +++DG ++KLQ+WDTAGQERFR++T AY
Sbjct:   65 KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAY 133          
The following BLAST results are available for this feature:
BLAST of CX289101 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
RAB12_CANFA4.378e-1146.38Ras-related protein Rab-12 (Fragment) OS=Canis fam... [more]
RAA1A_ARATH4.378e-1150.00Ras-related protein RABA1a OS=Arabidopsis thaliana... [more]
RAB4_DICDI5.718e-1142.86Ras-related protein Rab-4 OS=Dictyostelium discoid... [more]
YPT3_NICPL7.468e-1150.00Ras-related protein YPT3 OS=Nicotiana plumbaginifo... [more]
ARA1_ARATH7.468e-1145.71Ras-related protein ARA-1 OS=Arabidopsis thaliana ... [more]
RAB26_HUMAN9.753e-1144.93Ras-related protein Rab-26 OS=Homo sapiens GN=RAB2... [more]

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Properties
Property NameValue
Genbank descriptionC02009B06SK IF1 Citrus clementina cDNA clone C02009B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289101 ID=CX289101; Name=CX289101; organism=Citrus clementina; type=EST; length=417bp
AGAGAGAGCAAGAGAGAGAGAGAGACCGAGTCCCCCCCCCCCCCACGCAC
GCACAGACTCTCTGTTCACAAGCAATCTCTCCCATGTTACCGGCGACTTG
TTAAATCTTCTCACCCTTACAGTTTCAGAAAGAGAGTAATTGATTTGTTG
TGAGAGAGAAGAGATGGCTGCACCACCAGCGAGGGCACGTGCTGATTATG
ATTACCTCATCAAGCTTCTTTTGATCGGTGACAGCGGTGTGGGGAAGAGT
TGTTTGCTTCTGCGATTTTCAGATGGTTCCTTCACAACCAGTTTTATTAC
TACTATTGGCATTGATTTTAAGATAAGAACCATCGAGCTTGATGGAAAAC
GGATTAAATTGCAAATTTGGGATACAGCTGGTCAGGAACGGTTTCGAACC
ATCACAACAGCTTACTA
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