CX289101

Overview
NameCX289101
Unique NameCX289101
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length417
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: RAB1_DISOM (Ras-related protein ORAB-1 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.660e-18
Identity = 48/70 (68.57%), Postives = 50/70 (71.43%), Query Frame = 2 
Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQERFRTIT++Y
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 77
[Close]
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: RAB1B_PONAB (Ras-related protein Rab-1B OS=Pongo abelii GN=RAB1B PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.660e-18
Identity = 48/70 (68.57%), Postives = 50/70 (71.43%), Query Frame = 2 
Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQERFRTIT++Y
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 77
[Close]
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: RAB1B_MOUSE (Ras-related protein Rab-1B OS=Mus musculus GN=Rab1b PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.660e-18
Identity = 48/70 (68.57%), Postives = 50/70 (71.43%), Query Frame = 2 
Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQERFRTIT++Y
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 77
[Close]
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: RAB1B_MACFA (Ras-related protein Rab-1B OS=Macaca fascicularis GN=RAB1B PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.660e-18
Identity = 48/70 (68.57%), Postives = 50/70 (71.43%), Query Frame = 2 
Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQERFRTIT++Y
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 77
[Close]
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: RAB1B_HUMAN (Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1B PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.660e-18
Identity = 48/70 (68.57%), Postives = 50/70 (71.43%), Query Frame = 2 
Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQERFRTIT++Y
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 77
[Close]
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: RAB1B_BOVIN (Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.660e-18
Identity = 48/70 (68.57%), Postives = 50/70 (71.43%), Query Frame = 2 
Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQERFRTIT++Y
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 77
[Close]
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: RAB1A_RAT (Ras-related protein Rab-1A OS=Rattus norvegicus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 1.660e-18
Identity = 48/70 (68.57%), Postives = 50/70 (71.43%), Query Frame = 2 
Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQERFRTIT++Y
Sbjct:   11 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 80
[Close]
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: RAB1A_PIG (Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A PE=2 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 1.660e-18
Identity = 48/70 (68.57%), Postives = 50/70 (71.43%), Query Frame = 2 
Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQERFRTIT++Y
Sbjct:   11 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 80
[Close]
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: RAB1A_MOUSE (Ras-related protein Rab-1A OS=Mus musculus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 1.660e-18
Identity = 48/70 (68.57%), Postives = 50/70 (71.43%), Query Frame = 2 
Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQERFRTIT++Y
Sbjct:   11 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 80
[Close]
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: RAB1A_LYMST (Ras-related protein Rab-1A OS=Lymnaea stagnalis GN=RAB1A PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.660e-18
Identity = 48/70 (68.57%), Postives = 50/70 (71.43%), Query Frame = 2 
Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQERFRTIT++Y
Sbjct:   11 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 80
The following BLAST results are available for this feature:
BLAST of CX289101 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
RAB1_DISOM1.660e-1868.57Ras-related protein ORAB-1 OS=Discopyge ommata PE=... [more]
RAB1B_PONAB1.660e-1868.57Ras-related protein Rab-1B OS=Pongo abelii GN=RAB1... [more]
RAB1B_MOUSE1.660e-1868.57Ras-related protein Rab-1B OS=Mus musculus GN=Rab1... [more]
RAB1B_MACFA1.660e-1868.57Ras-related protein Rab-1B OS=Macaca fascicularis ... [more]
RAB1B_HUMAN1.660e-1868.57Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1... [more]
RAB1B_BOVIN1.660e-1868.57Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B ... [more]
RAB1A_RAT1.660e-1868.57Ras-related protein Rab-1A OS=Rattus norvegicus GN... [more]
RAB1A_PIG1.660e-1868.57Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A ... [more]
RAB1A_MOUSE1.660e-1868.57Ras-related protein Rab-1A OS=Mus musculus GN=Rab1... [more]
RAB1A_LYMST1.660e-1868.57Ras-related protein Rab-1A OS=Lymnaea stagnalis GN... [more]

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Properties
Property NameValue
Genbank descriptionC02009B06SK IF1 Citrus clementina cDNA clone C02009B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289101 ID=CX289101; Name=CX289101; organism=Citrus clementina; type=EST; length=417bp
AGAGAGAGCAAGAGAGAGAGAGAGACCGAGTCCCCCCCCCCCCCACGCAC
GCACAGACTCTCTGTTCACAAGCAATCTCTCCCATGTTACCGGCGACTTG
TTAAATCTTCTCACCCTTACAGTTTCAGAAAGAGAGTAATTGATTTGTTG
TGAGAGAGAAGAGATGGCTGCACCACCAGCGAGGGCACGTGCTGATTATG
ATTACCTCATCAAGCTTCTTTTGATCGGTGACAGCGGTGTGGGGAAGAGT
TGTTTGCTTCTGCGATTTTCAGATGGTTCCTTCACAACCAGTTTTATTAC
TACTATTGGCATTGATTTTAAGATAAGAACCATCGAGCTTGATGGAAAAC
GGATTAAATTGCAAATTTGGGATACAGCTGGTCAGGAACGGTTTCGAACC
ATCACAACAGCTTACTA
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