CX289101

Overview
NameCX289101
Unique NameCX289101
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length417
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: YPTM2_MAIZE (GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.076e-17
Identity = 46/70 (65.71%), Postives = 49/70 (70.00%), Query Frame = 2
Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            L KLLLIGDSGVGKSCLLLR                  KIRT+E DGK IKLQIWDTAGQERFRTIT++Y
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSY 77          
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: RYL1_YARLI (Ras-like GTP-binding protein RYL1 OS=Yarrowia lipolytica GN=RYL1 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.076e-17
Identity = 45/70 (64.29%), Postives = 50/70 (71.43%), Query Frame = 2
Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            LIKLLLIGDSGVGKSCLLLR                  KIRTI++  +R+KLQ+WDTAGQERFRTITTAY
Sbjct:   11 LIKLLLIGDSGVGKSCLLLRFCEDQFTPSFITTIGIDFKIRTIDIGNQRVKLQVWDTAGQERFRTITTAY 80          
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: RIC1_ORYSJ (Ras-related protein RIC1 OS=Oryza sativa subsp. japonica GN=RIC1 PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 1.076e-17
Identity = 46/70 (65.71%), Postives = 49/70 (70.00%), Query Frame = 2
Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            L KLLLIGDSGVGKSCLLLR                  KIRT+E DGK IKLQIWDTAGQERFRTIT++Y
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSY 77          
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: RBD2A_ARATH (Ras-related protein RABD2A OS=Arabidopsis thaliana GN=RABD2A PE=1 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 1.076e-17
Identity = 46/70 (65.71%), Postives = 49/70 (70.00%), Query Frame = 2
Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            L KLLLIGDSGVGKSCLLLR                  KIRT+E DGK IKLQIWDTAGQERFRTIT++Y
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFSDDSYVESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSY 77          
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: RAB1B_DICDI (Ras-related protein Rab-1B OS=Dictyostelium discoideum GN=rab1B PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 1.076e-17
Identity = 47/70 (67.14%), Postives = 49/70 (70.00%), Query Frame = 2
Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            L KLLLIGDSGVGKSCLLLR                  KIRTI LDGK IKLQIWDTAGQERFRTIT++Y
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTINLDGKIIKLQIWDTAGQERFRTITSSY 77          
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: RAB13_MOUSE (Ras-related protein Rab-13 OS=Mus musculus GN=Rab13 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.405e-17
Identity = 42/70 (60.00%), Postives = 51/70 (72.86%), Query Frame = 2
Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            L KLLLIGDSGVGK+CL++R                  KIRT++++GKRIKLQ+WDTAGQERF+TITTAY
Sbjct:    8 LFKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVDIEGKRIKLQVWDTAGQERFKTITTAY 77          
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: YPT1_SCHPO (GTP-binding protein ypt1 OS=Schizosaccharomyces pombe GN=ypt1 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 1.835e-17
Identity = 45/70 (64.29%), Postives = 49/70 (70.00%), Query Frame = 2
Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            L KLLLIGDSGVGKSCLLLR                  KIRT EL+GK +KLQIWDTAGQERFRTIT++Y
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQERFRTITSSY 77          
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: RAB1C_DICDI (Ras-related protein Rab-1C OS=Dictyostelium discoideum GN=Rab1C PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.835e-17
Identity = 44/70 (62.86%), Postives = 51/70 (72.86%), Query Frame = 2
Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            L+K+L+IGDSGVGKSC+LLR                   IRTIELDGK+IKLQIWDTAGQERF+TITT+Y
Sbjct:   33 LLKILVIGDSGVGKSCMLLRFADNRFTDSYISTIGVDFCIRTIELDGKKIKLQIWDTAGQERFKTITTSY 102          
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: RAB1B_PIG (Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.835e-17
Identity = 47/70 (67.14%), Postives = 49/70 (70.00%), Query Frame = 2
Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQER RTIT++Y
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERGRTITSSY 77          
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: YPT1_YEAST (GTP-binding protein YPT1 OS=Saccharomyces cerevisiae GN=YPT1 PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 2.397e-17
Identity = 44/70 (62.86%), Postives = 50/70 (71.43%), Query Frame = 2
Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            L KLLLIG+SGVGKSCLLLR                  KI+T+ELDGK +KLQIWDTAGQERFRTIT++Y
Sbjct:    8 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSY 77          
The following BLAST results are available for this feature:
BLAST of CX289101 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
YPTM2_MAIZE1.076e-1765.71GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=... [more]
RYL1_YARLI1.076e-1764.29Ras-like GTP-binding protein RYL1 OS=Yarrowia lipo... [more]
RIC1_ORYSJ1.076e-1765.71Ras-related protein RIC1 OS=Oryza sativa subsp. ja... [more]
RBD2A_ARATH1.076e-1765.71Ras-related protein RABD2A OS=Arabidopsis thaliana... [more]
RAB1B_DICDI1.076e-1767.14Ras-related protein Rab-1B OS=Dictyostelium discoi... [more]
RAB13_MOUSE1.405e-1760.00Ras-related protein Rab-13 OS=Mus musculus GN=Rab1... [more]
YPT1_SCHPO1.835e-1764.29GTP-binding protein ypt1 OS=Schizosaccharomyces po... [more]
RAB1C_DICDI1.835e-1762.86Ras-related protein Rab-1C OS=Dictyostelium discoi... [more]
RAB1B_PIG1.835e-1767.14Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B ... [more]
YPT1_YEAST2.397e-1762.86GTP-binding protein YPT1 OS=Saccharomyces cerevisi... [more]

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Properties
Property NameValue
Genbank descriptionC02009B06SK IF1 Citrus clementina cDNA clone C02009B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289101 ID=CX289101; Name=CX289101; organism=Citrus clementina; type=EST; length=417bp
AGAGAGAGCAAGAGAGAGAGAGAGACCGAGTCCCCCCCCCCCCCACGCAC
GCACAGACTCTCTGTTCACAAGCAATCTCTCCCATGTTACCGGCGACTTG
TTAAATCTTCTCACCCTTACAGTTTCAGAAAGAGAGTAATTGATTTGTTG
TGAGAGAGAAGAGATGGCTGCACCACCAGCGAGGGCACGTGCTGATTATG
ATTACCTCATCAAGCTTCTTTTGATCGGTGACAGCGGTGTGGGGAAGAGT
TGTTTGCTTCTGCGATTTTCAGATGGTTCCTTCACAACCAGTTTTATTAC
TACTATTGGCATTGATTTTAAGATAAGAACCATCGAGCTTGATGGAAAAC
GGATTAAATTGCAAATTTGGGATACAGCTGGTCAGGAACGGTTTCGAACC
ATCACAACAGCTTACTA
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