CX289101

Overview
NameCX289101
Unique NameCX289101
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length417
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: RAB13_HUMAN (Ras-related protein Rab-13 OS=Homo sapiens GN=RAB13 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.130e-17
Identity = 41/70 (58.57%), Postives = 51/70 (72.86%), Query Frame = 2
Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            L KLLLIGDSGVGK+CL++R                  KIRT++++GK+IKLQ+WDTAGQERF+TITTAY
Sbjct:    8 LFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQERFKTITTAY 77          
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: YPTV2_VOLCA (GTP-binding protein yptV2 OS=Volvox carteri GN=YPTV2 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.088e-17
Identity = 43/70 (61.43%), Postives = 50/70 (71.43%), Query Frame = 2
Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            LIKLLL+GDSGVGKSCLLLR                  KI+ +++DGK +KLQIWDTAGQERFRTIT+AY
Sbjct:   13 LIKLLLVGDSGVGKSCLLLRFTDDMFTSSFITTIGIDFKIKKVDVDGKLVKLQIWDTAGQERFRTITSAY 82          
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: RABD1_ARATH (Ras-related protein RABD1 OS=Arabidopsis thaliana GN=RABD1 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.088e-17
Identity = 46/70 (65.71%), Postives = 48/70 (68.57%), Query Frame = 2
Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            L KLLLIGDS VGKSCLLLR                  KIRTIE DGK IKLQIWDTAGQERFRTIT++Y
Sbjct:    8 LFKLLLIGDSSVGKSCLLLRFADDAYIDSYISTIGVDFKIRTIEQDGKTIKLQIWDTAGQERFRTITSSY 77          
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: RAB1C_HUMAN (Putative Ras-related protein Rab-1C OS=Homo sapiens GN=RAB1C PE=5 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 4.088e-17
Identity = 46/70 (65.71%), Postives = 49/70 (70.00%), Query Frame = 2
Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            L KLLLIGDSGVGKSCLLLR                  KI+TIELDGK IKLQIWDTAGQERF TIT++Y
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFADDPYTESYISTIGVDFKIQTIELDGKTIKLQIWDTAGQERFWTITSSY 77          
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: SEC4_YEAST (Ras-related protein SEC4 OS=Saccharomyces cerevisiae GN=SEC4 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.339e-17
Identity = 40/70 (57.14%), Postives = 52/70 (74.29%), Query Frame = 2
Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            ++K+LLIGDSGVGKSCLL+R                  KI+T++++GK++KLQ+WDTAGQERFRTITTAY
Sbjct:   20 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAY 89          
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: SEC4_CANGA (Ras-related protein SEC4 OS=Candida glabrata GN=SEC4 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.339e-17
Identity = 40/70 (57.14%), Postives = 52/70 (74.29%), Query Frame = 2
Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            ++K+LLIGDSGVGKSCLL+R                  KI+T++++GK++KLQ+WDTAGQERFRTITTAY
Sbjct:   20 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAY 89          
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: RAB13_BOVIN (Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.973e-17
Identity = 40/70 (57.14%), Postives = 51/70 (72.86%), Query Frame = 2
Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            L KLLLIGDSGVGK+CL++R                  +IRT++++GK+IKLQ+WDTAGQERF+TITTAY
Sbjct:    8 LFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFRIRTVDIEGKKIKLQVWDTAGQERFKTITTAY 77          
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: RAB1D_DICDI (Ras-related protein Rab-1D OS=Dictyostelium discoideum GN=rab1D PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.189e-16
Identity = 43/68 (63.24%), Postives = 48/68 (70.59%), Query Frame = 2
Query:  212 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            K+LLIGDSGVGKSCLLLR                  KI+T+ LDGK IKLQIWDTAGQERFRTIT++Y
Sbjct:   12 KILLIGDSGVGKSCLLLRFADDSWTDTHISTIGVDFKIKTLNLDGKTIKLQIWDTAGQERFRTITSSY 79          
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: RAB10_RAT (Ras-related protein Rab-10 OS=Rattus norvegicus GN=Rab10 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.029e-16
Identity = 42/70 (60.00%), Postives = 48/70 (68.57%), Query Frame = 2
Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            L KLLLIGDSGVGK+C+L R                  KI+T+EL GK+IKLQIWDTAGQERF TITT+Y
Sbjct:    9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIEIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSY 78          
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: RAB10_PONAB (Ras-related protein Rab-10 OS=Pongo abelii GN=RAB10 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.029e-16
Identity = 42/70 (60.00%), Postives = 48/70 (68.57%), Query Frame = 2
Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            L KLLLIGDSGVGK+C+L R                  KI+T+EL GK+IKLQIWDTAGQERF TITT+Y
Sbjct:    9 LFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSY 78          
The following BLAST results are available for this feature:
BLAST of CX289101 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
RAB13_HUMAN3.130e-1758.57Ras-related protein Rab-13 OS=Homo sapiens GN=RAB1... [more]
YPTV2_VOLCA4.088e-1761.43GTP-binding protein yptV2 OS=Volvox carteri GN=YPT... [more]
RABD1_ARATH4.088e-1765.71Ras-related protein RABD1 OS=Arabidopsis thaliana ... [more]
RAB1C_HUMAN4.088e-1765.71Putative Ras-related protein Rab-1C OS=Homo sapien... [more]
SEC4_YEAST5.339e-1757.14Ras-related protein SEC4 OS=Saccharomyces cerevisi... [more]
SEC4_CANGA5.339e-1757.14Ras-related protein SEC4 OS=Candida glabrata GN=SE... [more]
RAB13_BOVIN6.973e-1757.14Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 ... [more]
RAB1D_DICDI1.189e-1663.24Ras-related protein Rab-1D OS=Dictyostelium discoi... [more]
RAB10_RAT2.029e-1660.00Ras-related protein Rab-10 OS=Rattus norvegicus GN... [more]
RAB10_PONAB2.029e-1660.00Ras-related protein Rab-10 OS=Pongo abelii GN=RAB1... [more]

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Properties
Property NameValue
Genbank descriptionC02009B06SK IF1 Citrus clementina cDNA clone C02009B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289101 ID=CX289101; Name=CX289101; organism=Citrus clementina; type=EST; length=417bp
AGAGAGAGCAAGAGAGAGAGAGAGACCGAGTCCCCCCCCCCCCCACGCAC
GCACAGACTCTCTGTTCACAAGCAATCTCTCCCATGTTACCGGCGACTTG
TTAAATCTTCTCACCCTTACAGTTTCAGAAAGAGAGTAATTGATTTGTTG
TGAGAGAGAAGAGATGGCTGCACCACCAGCGAGGGCACGTGCTGATTATG
ATTACCTCATCAAGCTTCTTTTGATCGGTGACAGCGGTGTGGGGAAGAGT
TGTTTGCTTCTGCGATTTTCAGATGGTTCCTTCACAACCAGTTTTATTAC
TACTATTGGCATTGATTTTAAGATAAGAACCATCGAGCTTGATGGAAAAC
GGATTAAATTGCAAATTTGGGATACAGCTGGTCAGGAACGGTTTCGAACC
ATCACAACAGCTTACTA
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