CX289101

Overview
NameCX289101
Unique NameCX289101
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length417
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: RAB43_HUMAN (Ras-related protein Rab-43 OS=Homo sapiens GN=RAB43 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.678e-13
Identity = 34/70 (48.57%), Postives = 46/70 (65.71%), Query Frame = 2
Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            L KL+L+GD+ VGK+C++ R                   ++T+E+ GKR+KLQIWDTAGQERFRTIT +Y
Sbjct:   18 LFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSY 87          
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: RAB19_RAT (Ras-related protein Rab-19 OS=Rattus norvegicus GN=Rab19 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.979e-13
Identity = 32/70 (45.71%), Postives = 46/70 (65.71%), Query Frame = 2
Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            L K++LIGDS VGK+C++                     +R++E+DGK++K+Q+WDTAGQERFRTIT +Y
Sbjct:   17 LFKVILIGDSNVGKTCVVQHFKSGVYSESQQNTIGVDFTVRSLEIDGKKVKMQVWDTAGQERFRTITQSY 86          
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: RAB19_MOUSE (Ras-related protein Rab-19 OS=Mus musculus GN=Rab19 PE=2 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 7.979e-13
Identity = 32/70 (45.71%), Postives = 46/70 (65.71%), Query Frame = 2
Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            L K++LIGDS VGK+C++                     +R++E+DGK++K+Q+WDTAGQERFRTIT +Y
Sbjct:   17 LFKVILIGDSNVGKTCVVQHFKSGVYSESQQNTIGVDFTVRSLEIDGKKVKMQVWDTAGQERFRTITQSY 86          
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: RAB19_BOVIN (Ras-related protein Rab-19 OS=Bos taurus GN=RAB19 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.979e-13
Identity = 32/70 (45.71%), Postives = 45/70 (64.29%), Query Frame = 2
Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            L K++LIGDS VGK+C++                     +R +E+DGK++K+Q+WDTAGQERFRTIT +Y
Sbjct:   17 LFKIILIGDSNVGKTCVVQHFKSGVYMEAQQNTIGVDFTVRALEIDGKKVKMQVWDTAGQERFRTITQSY 86          
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: RAB18_RAT (Ras-related protein Rab-18 OS=Rattus norvegicus GN=Rab18 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.979e-13
Identity = 35/69 (50.72%), Postives = 45/69 (65.22%), Query Frame = 2
Query:  209 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            +K+L+IG+SGVGKS LLLR                  K++TI +DG + KL IWDTAGQERFRT+T +Y
Sbjct:    9 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSY 77          
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: RAB18_PONAB (Ras-related protein Rab-18 OS=Pongo abelii GN=RAB18 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.979e-13
Identity = 35/69 (50.72%), Postives = 45/69 (65.22%), Query Frame = 2
Query:  209 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            +K+L+IG+SGVGKS LLLR                  K++TI +DG + KL IWDTAGQERFRT+T +Y
Sbjct:    9 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSY 77          
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: RAB18_MOUSE (Ras-related protein Rab-18 OS=Mus musculus GN=Rab18 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 7.979e-13
Identity = 35/69 (50.72%), Postives = 45/69 (65.22%), Query Frame = 2
Query:  209 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            +K+L+IG+SGVGKS LLLR                  K++TI +DG + KL IWDTAGQERFRT+T +Y
Sbjct:    9 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSY 77          
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: RAB18_HUMAN (Ras-related protein Rab-18 OS=Homo sapiens GN=RAB18 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.979e-13
Identity = 35/69 (50.72%), Postives = 45/69 (65.22%), Query Frame = 2
Query:  209 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            +K+L+IG+SGVGKS LLLR                  K++TI +DG + KL IWDTAGQERFRT+T +Y
Sbjct:    9 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSY 77          
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: RAB18_CHICK (Ras-related protein Rab-18 OS=Gallus gallus GN=RAB18 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.979e-13
Identity = 35/69 (50.72%), Postives = 45/69 (65.22%), Query Frame = 2
Query:  209 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            +K+L+IG+SGVGKS LLLR                  K++TI +DG + KL IWDTAGQERFRT+T +Y
Sbjct:    9 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSY 77          
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: RAB18_BOVIN (Ras-related protein Rab-18 OS=Bos taurus GN=RAB18 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.979e-13
Identity = 35/69 (50.72%), Postives = 45/69 (65.22%), Query Frame = 2
Query:  209 IKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            +K+L+IG+SGVGKS LLLR                  K++TI +DG + KL IWDTAGQERFRT+T +Y
Sbjct:    9 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSY 77          
The following BLAST results are available for this feature:
BLAST of CX289101 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
RAB43_HUMAN4.678e-1348.57Ras-related protein Rab-43 OS=Homo sapiens GN=RAB4... [more]
RAB19_RAT7.979e-1345.71Ras-related protein Rab-19 OS=Rattus norvegicus GN... [more]
RAB19_MOUSE7.979e-1345.71Ras-related protein Rab-19 OS=Mus musculus GN=Rab1... [more]
RAB19_BOVIN7.979e-1345.71Ras-related protein Rab-19 OS=Bos taurus GN=RAB19 ... [more]
RAB18_RAT7.979e-1350.72Ras-related protein Rab-18 OS=Rattus norvegicus GN... [more]
RAB18_PONAB7.979e-1350.72Ras-related protein Rab-18 OS=Pongo abelii GN=RAB1... [more]
RAB18_MOUSE7.979e-1350.72Ras-related protein Rab-18 OS=Mus musculus GN=Rab1... [more]
RAB18_HUMAN7.979e-1350.72Ras-related protein Rab-18 OS=Homo sapiens GN=RAB1... [more]
RAB18_CHICK7.979e-1350.72Ras-related protein Rab-18 OS=Gallus gallus GN=RAB... [more]
RAB18_BOVIN7.979e-1350.72Ras-related protein Rab-18 OS=Bos taurus GN=RAB18 ... [more]

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Properties
Property NameValue
Genbank descriptionC02009B06SK IF1 Citrus clementina cDNA clone C02009B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289101 ID=CX289101; Name=CX289101; organism=Citrus clementina; type=EST; length=417bp
AGAGAGAGCAAGAGAGAGAGAGAGACCGAGTCCCCCCCCCCCCCACGCAC
GCACAGACTCTCTGTTCACAAGCAATCTCTCCCATGTTACCGGCGACTTG
TTAAATCTTCTCACCCTTACAGTTTCAGAAAGAGAGTAATTGATTTGTTG
TGAGAGAGAAGAGATGGCTGCACCACCAGCGAGGGCACGTGCTGATTATG
ATTACCTCATCAAGCTTCTTTTGATCGGTGACAGCGGTGTGGGGAAGAGT
TGTTTGCTTCTGCGATTTTCAGATGGTTCCTTCACAACCAGTTTTATTAC
TACTATTGGCATTGATTTTAAGATAAGAACCATCGAGCTTGATGGAAAAC
GGATTAAATTGCAAATTTGGGATACAGCTGGTCAGGAACGGTTTCGAACC
ATCACAACAGCTTACTA
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