CX289101

Overview
NameCX289101
Unique NameCX289101
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length417
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: RAB30_MOUSE (Ras-related protein Rab-30 OS=Mus musculus GN=Rab30 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.042e-12
Identity = 33/70 (47.14%), Postives = 48/70 (68.57%), Query Frame = 2
Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            L K++LIG++GVGK+CL+ R                   I+T+E++G+++KLQIWDTAGQERFR+IT +Y
Sbjct:    9 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSY 78          
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: RAB30_HUMAN (Ras-related protein Rab-30 OS=Homo sapiens GN=RAB30 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.042e-12
Identity = 33/70 (47.14%), Postives = 48/70 (68.57%), Query Frame = 2
Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            L K++LIG++GVGK+CL+ R                   I+T+E++G+++KLQIWDTAGQERFR+IT +Y
Sbjct:    9 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSY 78          
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: RAB30_BOVIN (Ras-related protein Rab-30 OS=Bos taurus GN=RAB30 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.042e-12
Identity = 33/70 (47.14%), Postives = 48/70 (68.57%), Query Frame = 2
Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            L K++LIG++GVGK+CL+ R                   I+T+E++G+++KLQIWDTAGQERFR+IT +Y
Sbjct:    9 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSY 78          
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: YPTV4_VOLCA (GTP-binding protein yptV4 OS=Volvox carteri GN=YPTV4 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.361e-12
Identity = 36/70 (51.43%), Postives = 44/70 (62.86%), Query Frame = 2
Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            L K ++IGD+GVGKSCLLL+                    R I +DGK+IKLQIWDTAGQE FR+IT +Y
Sbjct:    6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIWDTAGQESFRSITRSY 75          
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: YPTC4_CHLRE (GTP-binding protein YPTC4 OS=Chlamydomonas reinhardtii GN=YPTC4 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.361e-12
Identity = 36/70 (51.43%), Postives = 44/70 (62.86%), Query Frame = 2
Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            L K ++IGD+GVGKSCLLL+                    R I +DGK+IKLQIWDTAGQE FR+IT +Y
Sbjct:    6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIWDTAGQESFRSITRSY 75          
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: RAB19_HUMAN (Ras-related protein Rab-19 OS=Homo sapiens GN=RAB19 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.361e-12
Identity = 31/70 (44.29%), Postives = 46/70 (65.71%), Query Frame = 2
Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            L K++LIGDS VGK+C++                     +R++++DGK++K+Q+WDTAGQERFRTIT +Y
Sbjct:   17 LFKIILIGDSNVGKTCVVQHFKSGVYTETQQNTIGVDFTVRSLDIDGKKVKMQVWDTAGQERFRTITQSY 86          
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: RAB2_LYMST (Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=RAB2 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.777e-12
Identity = 36/70 (51.43%), Postives = 44/70 (62.86%), Query Frame = 2
Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            L K ++IGD+GVGKSCLLL+                    R I +DGK+IKLQIWDTAGQE FR+IT +Y
Sbjct:    6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSY 75          
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: RAB2B_MOUSE (Ras-related protein Rab-2B OS=Mus musculus GN=Rab2b PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.777e-12
Identity = 35/70 (50.00%), Postives = 44/70 (62.86%), Query Frame = 2
Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            L K ++IGD+GVGKSCLLL+                    R + +DGK+IKLQIWDTAGQE FR+IT +Y
Sbjct:    6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSY 75          
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: RAB2B_HUMAN (Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2B PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.777e-12
Identity = 35/70 (50.00%), Postives = 44/70 (62.86%), Query Frame = 2
Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            L K ++IGD+GVGKSCLLL+                    R + +DGK+IKLQIWDTAGQE FR+IT +Y
Sbjct:    6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSY 75          
BLAST of CX289101 vs. ExPASy Swiss-Prot
Match: RAB2A_RAT (Ras-related protein Rab-2A OS=Rattus norvegicus GN=Rab2a PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.777e-12
Identity = 36/70 (51.43%), Postives = 44/70 (62.86%), Query Frame = 2
Query:  206 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 415
            L K ++IGD+GVGKSCLLL+                    R I +DGK+IKLQIWDTAGQE FR+IT +Y
Sbjct:    6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTMGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSY 75          
The following BLAST results are available for this feature:
BLAST of CX289101 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 186
Match NameE-valueIdentityDescription
RAB30_MOUSE1.042e-1247.14Ras-related protein Rab-30 OS=Mus musculus GN=Rab3... [more]
RAB30_HUMAN1.042e-1247.14Ras-related protein Rab-30 OS=Homo sapiens GN=RAB3... [more]
RAB30_BOVIN1.042e-1247.14Ras-related protein Rab-30 OS=Bos taurus GN=RAB30 ... [more]
YPTV4_VOLCA1.361e-1251.43GTP-binding protein yptV4 OS=Volvox carteri GN=YPT... [more]
YPTC4_CHLRE1.361e-1251.43GTP-binding protein YPTC4 OS=Chlamydomonas reinhar... [more]
RAB19_HUMAN1.361e-1244.29Ras-related protein Rab-19 OS=Homo sapiens GN=RAB1... [more]
RAB2_LYMST1.777e-1251.43Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=... [more]
RAB2B_MOUSE1.777e-1250.00Ras-related protein Rab-2B OS=Mus musculus GN=Rab2... [more]
RAB2B_HUMAN1.777e-1250.00Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2... [more]
RAB2A_RAT1.777e-1251.43Ras-related protein Rab-2A OS=Rattus norvegicus GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02009B06SK IF1 Citrus clementina cDNA clone C02009B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289101 ID=CX289101; Name=CX289101; organism=Citrus clementina; type=EST; length=417bp
AGAGAGAGCAAGAGAGAGAGAGAGACCGAGTCCCCCCCCCCCCCACGCAC
GCACAGACTCTCTGTTCACAAGCAATCTCTCCCATGTTACCGGCGACTTG
TTAAATCTTCTCACCCTTACAGTTTCAGAAAGAGAGTAATTGATTTGTTG
TGAGAGAGAAGAGATGGCTGCACCACCAGCGAGGGCACGTGCTGATTATG
ATTACCTCATCAAGCTTCTTTTGATCGGTGACAGCGGTGTGGGGAAGAGT
TGTTTGCTTCTGCGATTTTCAGATGGTTCCTTCACAACCAGTTTTATTAC
TACTATTGGCATTGATTTTAAGATAAGAACCATCGAGCTTGATGGAAAAC
GGATTAAATTGCAAATTTGGGATACAGCTGGTCAGGAACGGTTTCGAACC
ATCACAACAGCTTACTA
back to top