CX289111

Overview
NameCX289111
Unique NameCX289111
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length226
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX289111 vs. ExPASy Swiss-Prot
Match: RL31_PAROL (60S ribosomal protein L31 OS=Paralichthys olivaceus GN=rpl31 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.583e-24
Identity = 49/71 (69.01%), Postives = 63/71 (88.73%), Query Frame = 3 
Query:   12 EVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKRVRVRIA 224
            EVVTRE+TIN+HKR+HG  FKK+AP+AIKEIRKFA K MGT DVR+D +LNK +WS+G+R+VP R+RVR++
Sbjct:   18 EVVTREYTINVHKRIHGVGFKKRAPRAIKEIRKFAVKEMGTPDVRIDTRLNKAVWSKGVRNVPYRIRVRLS 88
[Close]
BLAST of CX289111 vs. ExPASy Swiss-Prot
Match: RL31_ICTPU (60S ribosomal protein L31 OS=Ictalurus punctatus GN=rpl31 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.701e-24
Identity = 48/71 (67.61%), Postives = 64/71 (90.14%), Query Frame = 3 
Query:   12 EVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKRVRVRIA 224
            EVVTRE+TIN+HKR+HG +FKK+AP+AIKEIRKFA K MGT DVR+D +LNK +W++G+R+VP R+RVR++
Sbjct:   19 EVVTREYTINVHKRIHGISFKKRAPRAIKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGVRNVPYRMRVRLS 89
[Close]
BLAST of CX289111 vs. ExPASy Swiss-Prot
Match: RL31_RAT (60S ribosomal protein L31 OS=Rattus norvegicus GN=Rpl31 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.528e-24
Identity = 48/71 (67.61%), Postives = 63/71 (88.73%), Query Frame = 3 
Query:   12 EVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKRVRVRIA 224
            EVVTRE+TIN+HKR+HG  FKK+AP+A+KEIRKFA K MGT DVR+D +LNK +W++GIR+VP R+RVR++
Sbjct:   19 EVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLS 89
[Close]
BLAST of CX289111 vs. ExPASy Swiss-Prot
Match: RL31_PONAB (60S ribosomal protein L31 OS=Pongo abelii GN=RPL31 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.528e-24
Identity = 48/71 (67.61%), Postives = 63/71 (88.73%), Query Frame = 3 
Query:   12 EVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKRVRVRIA 224
            EVVTRE+TIN+HKR+HG  FKK+AP+A+KEIRKFA K MGT DVR+D +LNK +W++GIR+VP R+RVR++
Sbjct:   19 EVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLS 89
[Close]
BLAST of CX289111 vs. ExPASy Swiss-Prot
Match: RL31_PIG (60S ribosomal protein L31 OS=Sus scrofa GN=RPL31 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.528e-24
Identity = 48/71 (67.61%), Postives = 63/71 (88.73%), Query Frame = 3 
Query:   12 EVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKRVRVRIA 224
            EVVTRE+TIN+HKR+HG  FKK+AP+A+KEIRKFA K MGT DVR+D +LNK +W++GIR+VP R+RVR++
Sbjct:   19 EVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLS 89
[Close]
BLAST of CX289111 vs. ExPASy Swiss-Prot
Match: RL31_MOUSE (60S ribosomal protein L31 OS=Mus musculus GN=Rpl31 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.528e-24
Identity = 48/71 (67.61%), Postives = 63/71 (88.73%), Query Frame = 3 
Query:   12 EVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKRVRVRIA 224
            EVVTRE+TIN+HKR+HG  FKK+AP+A+KEIRKFA K MGT DVR+D +LNK +W++GIR+VP R+RVR++
Sbjct:   19 EVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLS 89
[Close]
BLAST of CX289111 vs. ExPASy Swiss-Prot
Match: RL31_MARMO (60S ribosomal protein L31 OS=Marmota monax GN=RPL31 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.528e-24
Identity = 48/71 (67.61%), Postives = 63/71 (88.73%), Query Frame = 3 
Query:   12 EVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKRVRVRIA 224
            EVVTRE+TIN+HKR+HG  FKK+AP+A+KEIRKFA K MGT DVR+D +LNK +W++GIR+VP R+RVR++
Sbjct:   19 EVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLS 89
[Close]
BLAST of CX289111 vs. ExPASy Swiss-Prot
Match: RL31_HUMAN (60S ribosomal protein L31 OS=Homo sapiens GN=RPL31 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.528e-24
Identity = 48/71 (67.61%), Postives = 63/71 (88.73%), Query Frame = 3 
Query:   12 EVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKRVRVRIA 224
            EVVTRE+TIN+HKR+HG  FKK+AP+A+KEIRKFA K MGT DVR+D +LNK +W++GIR+VP R+RVR++
Sbjct:   19 EVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLS 89
[Close]
BLAST of CX289111 vs. ExPASy Swiss-Prot
Match: RL31_BOVIN (60S ribosomal protein L31 OS=Bos taurus GN=RPL31 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.528e-24
Identity = 48/71 (67.61%), Postives = 63/71 (88.73%), Query Frame = 3 
Query:   12 EVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKRVRVRIA 224
            EVVTRE+TIN+HKR+HG  FKK+AP+A+KEIRKFA K MGT DVR+D +LNK +W++GIR+VP R+RVR++
Sbjct:   19 EVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLS 89
[Close]
BLAST of CX289111 vs. ExPASy Swiss-Prot
Match: RL31_XENLA (60S ribosomal protein L31 OS=Xenopus laevis GN=rpl31 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.986e-23
Identity = 47/71 (66.20%), Postives = 62/71 (87.32%), Query Frame = 3 
Query:   12 EVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKRVRVRIA 224
            EVVTRE+TIN+HKR+HG  FKK+AP+A+KEIRKFA K M T DVR+D +LNK +W++GIR+VP R+RVR++
Sbjct:   19 EVVTREYTINIHKRIHGIGFKKRAPRALKEIRKFAVKEMRTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLS 89
The following BLAST results are available for this feature:
BLAST of CX289111 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RL31_PAROL1.583e-2469.0160S ribosomal protein L31 OS=Paralichthys olivaceu... [more]
RL31_ICTPU2.701e-2467.6160S ribosomal protein L31 OS=Ictalurus punctatus G... [more]
RL31_RAT3.528e-2467.6160S ribosomal protein L31 OS=Rattus norvegicus GN=... [more]
RL31_PONAB3.528e-2467.6160S ribosomal protein L31 OS=Pongo abelii GN=RPL31... [more]
RL31_PIG3.528e-2467.6160S ribosomal protein L31 OS=Sus scrofa GN=RPL31 P... [more]
RL31_MOUSE3.528e-2467.6160S ribosomal protein L31 OS=Mus musculus GN=Rpl31... [more]
RL31_MARMO3.528e-2467.6160S ribosomal protein L31 OS=Marmota monax GN=RPL3... [more]
RL31_HUMAN3.528e-2467.6160S ribosomal protein L31 OS=Homo sapiens GN=RPL31... [more]
RL31_BOVIN3.528e-2467.6160S ribosomal protein L31 OS=Bos taurus GN=RPL31 P... [more]
RL31_XENLA2.986e-2366.2060S ribosomal protein L31 OS=Xenopus laevis GN=rpl... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02009C05SK IF1 Citrus clementina cDNA clone C02009C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289111 ID=CX289111; Name=CX289111; organism=Citrus clementina; type=EST; length=226bp
GACGAAAGGAGGAGGTGGTGACCAGAGAGTTCACCATCAACCTTCACAAG
CGTCTACATGGCTGTACATTCAAGAAGAAAGCTCCAAAAGCCATTAAGGA
GATCAGGAAATTTGCAGAGAAAGCTATGGGCACTAAGGATGTTAGGGTTG
ATGTCAAATTGAACAAGCAAATCTGGAGCAGGGGCATCCGAAGTGTCCCA
AAGAGGGTTAGGGTTCGCATTGCTCG
back to top