CX289111

Overview
NameCX289111
Unique NameCX289111
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length226
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289111 vs. ExPASy Swiss-Prot
Match: RL31_ASHGO (60S ribosomal protein L31 OS=Ashbya gossypii GN=RPL31 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.900e-23
Identity = 47/72 (65.28%), Postives = 64/72 (88.89%), Query Frame = 3
Query:    9 EEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKRVRVRIA 224
            ++VVTRE+TINLHKRLHG TFKK+AP+A+KEI+KFA+  MGT+DVR+D +LN +IW RG++ VP R+R+RI+
Sbjct:    5 KDVVTREYTINLHKRLHGVTFKKRAPRAVKEIKKFAKLHMGTEDVRLDPRLNTEIWKRGVKGVPFRMRLRIS 76          
BLAST of CX289111 vs. ExPASy Swiss-Prot
Match: RL31_DROME (60S ribosomal protein L31 OS=Drosophila melanogaster GN=RpL31 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.135e-22
Identity = 50/71 (70.42%), Postives = 60/71 (84.51%), Query Frame = 3
Query:   12 EVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKRVRVRIA 224
            EVVTRE TI+L KR+H   FKK+AP+AIKEIRKFAE+ MGT DVR+D +LNK IWS+GIRS P R+RVR+A
Sbjct:   16 EVVTRECTIHLAKRVHNIGFKKRAPRAIKEIRKFAEREMGTTDVRIDTRLNKHIWSKGIRSTPFRIRVRLA 86          
BLAST of CX289111 vs. ExPASy Swiss-Prot
Match: RL31_DICDI (60S ribosomal protein L31 OS=Dictyostelium discoideum GN=rpl31 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.135e-22
Identity = 47/71 (66.20%), Postives = 62/71 (87.32%), Query Frame = 3
Query:   12 EVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKRVRVRIA 224
            E VTRE+TINLHKRL+G TFK +APKA+K+++ FA+K MGTKDVR+D KLNK +WS+GI++VP RVRV ++
Sbjct:    5 EAVTREYTINLHKRLYGTTFKDRAPKAVKQVKLFAQKIMGTKDVRIDNKLNKFLWSQGIKNVPHRVRVTLS 75          
BLAST of CX289111 vs. ExPASy Swiss-Prot
Match: RL31_CHLRE (60S ribosomal protein L31 OS=Chlamydomonas reinhardtii GN=RPL31 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.936e-22
Identity = 49/74 (66.22%), Postives = 62/74 (83.78%), Query Frame = 3
Query:    3 RKEEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKRVRVRIA 224
            R +E VTRE+TI+L KRLH  +FKK APKA+KEIRKFA K MGT DVR+DVKLNK +WS+GI++VP R+R+ I+
Sbjct:    7 RSKEQVTREYTIHLSKRLHKTSFKKCAPKAVKEIRKFASKVMGTSDVRLDVKLNKAVWSKGIKNVPTRLRIVIS 80          
BLAST of CX289111 vs. ExPASy Swiss-Prot
Match: RL31_CANGA (60S ribosomal protein L31 OS=Candida glabrata GN=RPL31 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.768e-21
Identity = 44/72 (61.11%), Postives = 63/72 (87.50%), Query Frame = 3
Query:    9 EEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKRVRVRIA 224
            ++VVTRE+TIN+HKRLHG +FKK+APKA+KEI+KFA+  MGT+DVR+  +LN++IW RG++ V  R+R+RI+
Sbjct:    5 KDVVTREYTINMHKRLHGVSFKKRAPKAVKEIKKFAKLHMGTEDVRLAPELNQEIWKRGVKGVAFRLRLRIS 76          
BLAST of CX289111 vs. ExPASy Swiss-Prot
Match: RL31_SCHPO (60S ribosomal protein L31 OS=Schizosaccharomyces pombe GN=rpl31 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.132e-21
Identity = 44/71 (61.97%), Postives = 62/71 (87.32%), Query Frame = 3
Query:   12 EVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKRVRVRIA 224
            +VVTR++TI++HKRL+G +FKK+AP+AIKEI  FA+K M TK+VRVD  LNK++W RGIR+VP R+R+R++
Sbjct:   11 QVVTRDYTIHMHKRLYGVSFKKRAPRAIKEIVAFAQKHMQTKEVRVDPSLNKEVWKRGIRNVPHRLRLRLS 81          
BLAST of CX289111 vs. ExPASy Swiss-Prot
Match: RL31_AEDAE (60S ribosomal protein L31 OS=Aedes aegypti GN=RpL31 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.132e-21
Identity = 45/71 (63.38%), Postives = 59/71 (83.10%), Query Frame = 3
Query:   12 EVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKRVRVRIA 224
            EVVTRE TINL++RLH   +KK+AP+A+K +RKFAEK MGT DVR+D +LNK +W RGIR+ P R+RVR++
Sbjct:   16 EVVTRECTINLNRRLHKVGYKKRAPRAVKIVRKFAEKEMGTNDVRIDTRLNKALWHRGIRNPPFRIRVRLS 86          
BLAST of CX289111 vs. ExPASy Swiss-Prot
Match: RL31_DROVI (60S ribosomal protein L31 OS=Drosophila virilis GN=RpL31 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.062e-20
Identity = 50/75 (66.67%), Postives = 59/75 (78.67%), Query Frame = 3
Query:   12 EVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGI----RSVPKRVRVRIA 224
            EVVTRE TI+L KR+H   FKK+AP+AIKEIRKF E+ MGT DVR+D +LNK IWS+GI    RS P RVRVR+A
Sbjct:   16 EVVTRECTIHLAKRVHNIGFKKRAPRAIKEIRKFTEREMGTNDVRIDTRLNKHIWSKGISLRYRSTPFRVRVRLA 90          
BLAST of CX289111 vs. ExPASy Swiss-Prot
Match: RL31B_YEAST (60S ribosomal protein L31-B OS=Saccharomyces cerevisiae GN=RPL31B PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.062e-20
Identity = 44/72 (61.11%), Postives = 62/72 (86.11%), Query Frame = 3
Query:    9 EEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKRVRVRIA 224
            ++VVTRE+TINLHKRLHG +FKK+AP+A+KEI+KFA+  MGT+DVR+  +LN+ IW RG++ V  R+R+RI+
Sbjct:    5 KDVVTREYTINLHKRLHGVSFKKRAPRAVKEIKKFAKLHMGTEDVRLAPELNQAIWKRGVKGVEYRLRLRIS 76          
BLAST of CX289111 vs. ExPASy Swiss-Prot
Match: RL31A_YEAST (60S ribosomal protein L31-A OS=Saccharomyces cerevisiae GN=RPL31A PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.812e-20
Identity = 44/72 (61.11%), Postives = 61/72 (84.72%), Query Frame = 3
Query:    9 EEVVTREFTINLHKRLHGCTFKKKAPKAIKEIRKFAEKAMGTKDVRVDVKLNKQIWSRGIRSVPKRVRVRIA 224
            ++VVTRE+TINLHKRLHG +FKK+AP+A+KEI+KFA+  MGT DVR+  +LN+ IW RG++ V  R+R+RI+
Sbjct:    5 KDVVTREYTINLHKRLHGVSFKKRAPRAVKEIKKFAKLHMGTDDVRLAPELNQAIWKRGVKGVEYRLRLRIS 76          
The following BLAST results are available for this feature:
BLAST of CX289111 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RL31_ASHGO3.900e-2365.2860S ribosomal protein L31 OS=Ashbya gossypii GN=RP... [more]
RL31_DROME1.135e-2270.4260S ribosomal protein L31 OS=Drosophila melanogast... [more]
RL31_DICDI1.135e-2266.2060S ribosomal protein L31 OS=Dictyostelium discoid... [more]
RL31_CHLRE1.936e-2266.2260S ribosomal protein L31 OS=Chlamydomonas reinhar... [more]
RL31_CANGA4.768e-2161.1160S ribosomal protein L31 OS=Candida glabrata GN=R... [more]
RL31_SCHPO8.132e-2161.9760S ribosomal protein L31 OS=Schizosaccharomyces p... [more]
RL31_AEDAE8.132e-2163.3860S ribosomal protein L31 OS=Aedes aegypti GN=RpL3... [more]
RL31_DROVI1.062e-2066.6760S ribosomal protein L31 OS=Drosophila virilis GN... [more]
RL31B_YEAST1.062e-2061.1160S ribosomal protein L31-B OS=Saccharomyces cerev... [more]
RL31A_YEAST1.812e-2061.1160S ribosomal protein L31-A OS=Saccharomyces cerev... [more]

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Properties
Property NameValue
Genbank descriptionC02009C05SK IF1 Citrus clementina cDNA clone C02009C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289111 ID=CX289111; Name=CX289111; organism=Citrus clementina; type=EST; length=226bp
GACGAAAGGAGGAGGTGGTGACCAGAGAGTTCACCATCAACCTTCACAAG
CGTCTACATGGCTGTACATTCAAGAAGAAAGCTCCAAAAGCCATTAAGGA
GATCAGGAAATTTGCAGAGAAAGCTATGGGCACTAAGGATGTTAGGGTTG
ATGTCAAATTGAACAAGCAAATCTGGAGCAGGGGCATCCGAAGTGTCCCA
AAGAGGGTTAGGGTTCGCATTGCTCG
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