CX289113

Overview
NameCX289113
Unique NameCX289113
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length403
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: ADH1_ORYSJ (Alcohol dehydrogenase 1 OS=Oryza sativa subsp. japonica GN=ADH1 PE=2 SV=2)

HSP 1 Score: 205.682 bits (522), Expect = 6.136e-53
Identity = 96/120 (80.00%), Postives = 107/120 (89.17%), Query Frame = 1
Query:    1 MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISMED 360
            MTNGGVDRSVECTGNI+ MI AFECVHDGWGVAVLVGVP KDA F T P+N LNERTLKGTFFGNYKPRTDLP+VV++YM K+LE+EKFITH +PFSEIN AF+ M KGEG+RCII ME+
Sbjct:  260 MTNGGVDRSVECTGNINAMIQAFECVHDGWGVAVLVGVPHKDAEFKTHPMNFLNERTLKGTFFGNYKPRTDLPNVVELYMKKELEVEKFITHSVPFSEINTAFDLMHKGEGIRCIIRMEN 379          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: ADH1_ORYSI (Alcohol dehydrogenase 1 OS=Oryza sativa subsp. indica GN=ADH1 PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 6.136e-53
Identity = 96/120 (80.00%), Postives = 107/120 (89.17%), Query Frame = 1
Query:    1 MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISMED 360
            MTNGGVDRSVECTGNI+ MI AFECVHDGWGVAVLVGVP KDA F T P+N LNERTLKGTFFGNYKPRTDLP+VV++YM K+LE+EKFITH +PFSEIN AF+ M KGEG+RCII ME+
Sbjct:  260 MTNGGVDRSVECTGNINAMIQAFECVHDGWGVAVLVGVPHKDAEFKTHPMNFLNERTLKGTFFGNYKPRTDLPNVVELYMKKELEVEKFITHSVPFSEINTAFDLMHKGEGIRCIIRMEN 379          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: ADH1_HORVU (Alcohol dehydrogenase 1 OS=Hordeum vulgare GN=ADH1 PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 1.047e-52
Identity = 94/120 (78.33%), Postives = 107/120 (89.17%), Query Frame = 1
Query:    1 MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISMED 360
            MTNGGVDRSVECTGN++ MI AFECVHDGWGVAVLVGVP KDA F T P+N LNERTLKGTFFGN+KPRTDLP+VV+MYM K+LE+EKFITH +PFSEIN AF+ M KGEG+RCII M++
Sbjct:  260 MTNGGVDRSVECTGNVNAMIQAFECVHDGWGVAVLVGVPHKDAEFKTHPMNFLNERTLKGTFFGNFKPRTDLPNVVEMYMKKELEVEKFITHSVPFSEINTAFDLMAKGEGIRCIIRMDN 379          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: ADH1_ARATH (Alcohol dehydrogenase class-P OS=Arabidopsis thaliana GN=ADH1 PE=1 SV=2)

HSP 1 Score: 204.527 bits (519), Expect = 1.367e-52
Identity = 93/118 (78.81%), Postives = 106/118 (89.83%), Query Frame = 1
Query:    1 MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISM 354
            MT+GGVDRSVECTG++  MI AFECVHDGWGVAVLVGVPSKD  F T P+N LNERTLKGTFFGNYKP+TD+P VV+ YMNK+LELEKFITH +PFSEINKAF+YM+KGE +RCII+M
Sbjct:  260 MTDGGVDRSVECTGSVQAMIQAFECVHDGWGVAVLVGVPSKDDAFKTHPMNFLNERTLKGTFFGNYKPKTDIPGVVEKYMNKELELEKFITHTVPFSEINKAFDYMLKGESIRCIITM 377          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: ADH2_MAIZE (Alcohol dehydrogenase 2 OS=Zea mays GN=ADH2 PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 3.045e-52
Identity = 94/120 (78.33%), Postives = 107/120 (89.17%), Query Frame = 1
Query:    1 MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISMED 360
            +TNGGVDRSVECTGN++ MISAFECVHDGWGVAVLVGVP KD  F T P+N L+E+TLKGTFFGNYKPRTDLP+VV+MYM K+LELEKFITH +PFSEIN AF+ M+KGE LRCI+ MED
Sbjct:  260 LTNGGVDRSVECTGNVNAMISAFECVHDGWGVAVLVGVPHKDDQFKTHPMNFLSEKTLKGTFFGNYKPRTDLPNVVEMYMKKELELEKFITHSVPFSEINTAFDLMLKGESLRCIMRMED 379          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: ADH1_TRIRP (Alcohol dehydrogenase 1 OS=Trifolium repens GN=ADH1 PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 5.194e-52
Identity = 94/120 (78.33%), Postives = 106/120 (88.33%), Query Frame = 1
Query:    1 MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISMED 360
            MT+GGVDR+VECTG+I  MISAFECVHDGWGVAVLVGVP KD  F T P+N LNERTLKGTF+GNYKPRTDLP+VV+ YM  +LELEKFITH IPFSEINKAF+YM+KGE +RCII ME+
Sbjct:  261 MTDGGVDRAVECTGSIQAMISAFECVHDGWGVAVLVGVPKKDDAFKTHPMNFLNERTLKGTFYGNYKPRTDLPNVVEQYMKGELELEKFITHSIPFSEINKAFDYMLKGESIRCIIRMEE 380          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: ADH2_ORYSJ (Alcohol dehydrogenase 2 OS=Oryza sativa subsp. japonica GN=ADH2 PE=2 SV=2)

HSP 1 Score: 201.83 bits (512), Expect = 8.860e-52
Identity = 91/120 (75.83%), Postives = 108/120 (90.00%), Query Frame = 1
Query:    1 MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISMED 360
            MTNGG+DR+VECTGNI+ MIS FECVHDGWGVAVLVGVP+KD VF T P+N LNE+TLKGTFFGNYKPRTDLP+VV++YM K+LELEKFITH +PFSEIN AF+ M+KGE LRC++ M++
Sbjct:  260 MTNGGLDRAVECTGNINAMISCFECVHDGWGVAVLVGVPTKDDVFKTHPMNFLNEKTLKGTFFGNYKPRTDLPNVVELYMKKELELEKFITHSVPFSEINTAFDLMLKGESLRCVMRMDE 379          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: ADH2_ORYSI (Alcohol dehydrogenase 2 OS=Oryza sativa subsp. indica GN=ADH2 PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 8.860e-52
Identity = 91/120 (75.83%), Postives = 108/120 (90.00%), Query Frame = 1
Query:    1 MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISMED 360
            MTNGG+DR+VECTGNI+ MIS FECVHDGWGVAVLVGVP+KD VF T P+N LNE+TLKGTFFGNYKPRTDLP+VV++YM K+LELEKFITH +PFSEIN AF+ M+KGE LRC++ M++
Sbjct:  260 MTNGGLDRAVECTGNINAMISCFECVHDGWGVAVLVGVPTKDDVFKTHPMNFLNEKTLKGTFFGNYKPRTDLPNVVELYMKKELELEKFITHSVPFSEINTAFDLMLKGESLRCVMRMDE 379          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: ADH3_HORVU (Alcohol dehydrogenase 3 OS=Hordeum vulgare GN=ADH3 PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 4.397e-51
Identity = 91/115 (79.13%), Postives = 104/115 (90.43%), Query Frame = 1
Query:    1 MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCI 345
            MTNGGVDR+VECTG+ID MI+ FECVHDGWGVAVLVGVP K+AVF T P+N LNE+TLKGTFFGNYKPRTDLP VV+MYM K+L+LEKFITH +PFS+IN AF+ M+KGEGLRCI
Sbjct:  260 MTNGGVDRAVECTGHIDAMIATFECVHDGWGVAVLVGVPHKEAVFKTHPMNFLNEKTLKGTFFGNYKPRTDLPEVVEMYMRKELDLEKFITHSVPFSQINTAFDLMLKGEGLRCI 374          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: ADH1_ZEALU (Alcohol dehydrogenase 1 (Fragment) OS=Zea luxurians GN=ADH1 PE=3 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 3.852e-47
Identity = 86/106 (81.13%), Postives = 96/106 (90.57%), Query Frame = 1
Query:    1 MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYM 318
            MTNGGVDRSVECTGNI+ MI AFECVHDGWGVAVLVGVP KDA F T P+N LNERTLKGTFFGNYKPRTDLP+VV++YM K+LE+EKFITH +PF+EINKAF+ M
Sbjct:  187 MTNGGVDRSVECTGNINAMIQAFECVHDGWGVAVLVGVPHKDAEFKTHPMNFLNERTLKGTFFGNYKPRTDLPNVVELYMKKELEVEKFITHSVPFAEINKAFDLM 292          
The following BLAST results are available for this feature:
BLAST of CX289113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
ADH1_ORYSJ6.136e-5380.00Alcohol dehydrogenase 1 OS=Oryza sativa subsp. jap... [more]
ADH1_ORYSI6.136e-5380.00Alcohol dehydrogenase 1 OS=Oryza sativa subsp. ind... [more]
ADH1_HORVU1.047e-5278.33Alcohol dehydrogenase 1 OS=Hordeum vulgare GN=ADH1... [more]
ADH1_ARATH1.367e-5278.81Alcohol dehydrogenase class-P OS=Arabidopsis thali... [more]
ADH2_MAIZE3.045e-5278.33Alcohol dehydrogenase 2 OS=Zea mays GN=ADH2 PE=2 S... [more]
ADH1_TRIRP5.194e-5278.33Alcohol dehydrogenase 1 OS=Trifolium repens GN=ADH... [more]
ADH2_ORYSJ8.860e-5275.83Alcohol dehydrogenase 2 OS=Oryza sativa subsp. jap... [more]
ADH2_ORYSI8.860e-5275.83Alcohol dehydrogenase 2 OS=Oryza sativa subsp. ind... [more]
ADH3_HORVU4.397e-5179.13Alcohol dehydrogenase 3 OS=Hordeum vulgare GN=ADH3... [more]
ADH1_ZEALU3.852e-4781.13Alcohol dehydrogenase 1 (Fragment) OS=Zea luxurian... [more]

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Properties
Property NameValue
Genbank descriptionC02009C07SK IF1 Citrus clementina cDNA clone C02009C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289113 ID=CX289113; Name=CX289113; organism=Citrus clementina; type=EST; length=403bp
ATGACGAACGGTGGAGTTGACAGAAGTGTGGAGTGCACCGGCAACATTGA
TAACATGATCTCAGCCTTCGAGTGTGTTCATGATGGATGGGGTGTAGCTG
TGCTCGTTGGAGTGCCCAGTAAGGATGCAGTGTTCATGACCAAGCCAATC
AATGTACTTAACGAAAGAACCCTCAAAGGAACTTTCTTCGGGAACTACAA
ACCGCGGACTGATCTGCCCTCTGTCGTTGATATGTACATGAACAAGCAAC
TGGAACTAGAGAAGTTTATAACCCATCGCATCCCTTTCTCGGAAATCAAT
AAAGCCTTCGAGTACATGGTGAAAGGGGAGGGTTTGAGGTGCATTATCAG
CATGGAAGACTAGGAGTGAAAAAGGGAAAGAATAATCAAGTAAATAACAA
TAG
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