CX289113

Overview
NameCX289113
Unique NameCX289113
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length403
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: ADH2_HORVU (Alcohol dehydrogenase 2 OS=Hordeum vulgare GN=ADH2 PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 1.618e-45
Identity = 85/120 (70.83%), Postives = 100/120 (83.33%), Query Frame = 1
Query:    1 MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISMED 360
            MT+GGV+R+VECTGN D MISAFECVHDGWGVA       K+AVF T P+N LNERTL+GTFFGNYKPRT LP VVDMYM K+LEL+KFITH +PFS+IN AF+ M++GEGLRC+I  E+
Sbjct:  260 MTDGGVNRAVECTGNADAMISAFECVHDGWGVA------HKEAVFKTHPMNFLNERTLRGTFFGNYKPRTGLPGVVDMYMRKELELDKFITHSLPFSQINTAFDLMLRGEGLRCVIRSEE 373          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: ADHX_ARATH (Alcohol dehydrogenase class-3 OS=Arabidopsis thaliana GN=ADH2 PE=1 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 1.988e-27
Identity = 52/116 (44.83%), Postives = 79/116 (68.10%), Query Frame = 1
Query:    1 MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCII 348
            +T+GGVD S EC GN+  M +A EC H GWG +V+VGV +      T+P  ++  R  KGT FG +K RT +P +V+ YMNK+++++++ITH +   EINKAF+ + +G  LRC++
Sbjct:  260 LTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRTQVPWLVEKYMNKEIKVDEYITHNLTLGEINKAFDLLHEGTCLRCVL 375          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: ADHX_PEA (Alcohol dehydrogenase class-3 OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.596e-27
Identity = 51/120 (42.50%), Postives = 82/120 (68.33%), Query Frame = 1
Query:    1 MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISMED 360
            +T+GGVD S EC GN+  M SA EC H GWG +V+VGV +      T+P  ++  R  KGT FG +K R+ +P +V+ Y+ K+++++++ITH +   EINKAF+ + +G+ LRC++++ D
Sbjct:  259 LTDGGVDYSFECLGNVSVMRSALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVEKYLKKEIKVDEYITHNLTLLEINKAFDLLHEGQCLRCVLAVHD 378          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: ADHX_DICDI (Alcohol dehydrogenase class-3 OS=Dictyostelium discoideum GN=adh5 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.683e-26
Identity = 51/118 (43.22%), Postives = 81/118 (68.64%), Query Frame = 1
Query:    1 MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISM 354
            +T+GGVD S EC GN++ M +A EC H GWGV+ +VGV    A   T+P  ++  R  KG+ FG  K R+ LPS++D YM+K+L++++++T   P +EIN AF+ M +G+ LR ++++
Sbjct:  262 ITDGGVDYSFECIGNVNVMRAALECCHKGWGVSTIVGVAPAGAEISTRPFQLVTGRVWKGSAFGGVKSRSQLPSIIDKYMDKKLKVDEYVTFTYPLNEINTAFDVMHEGKSLRSVVNL 379          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: ADHX_UROHA (Alcohol dehydrogenase class-3 OS=Uromastyx hardwickii PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.197e-26
Identity = 52/116 (44.83%), Postives = 79/116 (68.10%), Query Frame = 1
Query:    1 MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCII 348
            MT+GGVD S EC GN+  M +A E  H GWGV+V+VGV +      T+P  ++  RT KGT FG +K    +P +VD YM+K++++++F+TH +PF +IN+AFE M  G+ +R ++
Sbjct:  256 MTDGGVDYSFECIGNVGVMRAALEACHKGWGVSVIVGVAAAGQEIATRPFQLVTGRTWKGTAFGGWKSVESVPKLVDEYMSKKMKVDEFVTHTLPFEQINEAFELMHAGKSIRSVL 371          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: ADHX_ORYSJ (Alcohol dehydrogenase class-3 OS=Oryza sativa subsp. japonica GN=Os02g0815500 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.197e-26
Identity = 49/119 (41.18%), Postives = 82/119 (68.91%), Query Frame = 1
Query:    1 MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISME 357
            +T+GGVD S EC GN+  M SA EC H GWG +V+VGV +      T+P  ++  R  KGT FG +K R+ +P +V+ Y+NK++++++++TH +  ++INKAF+ + +G  LRC+++ +
Sbjct:  262 LTDGGVDYSFECIGNVSVMRSALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVEKYLNKEIKVDEYVTHSMNLTDINKAFDLLHEGGCLRCVLATD 380          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: ADHX_ORYSI (Alcohol dehydrogenase class-3 OS=Oryza sativa subsp. indica GN=ADHIII PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.197e-26
Identity = 49/119 (41.18%), Postives = 82/119 (68.91%), Query Frame = 1
Query:    1 MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISME 357
            +T+GGVD S EC GN+  M SA EC H GWG +V+VGV +      T+P  ++  R  KGT FG +K R+ +P +V+ Y+NK++++++++TH +  ++INKAF+ + +G  LRC+++ +
Sbjct:  262 LTDGGVDYSFECIGNVSVMRSALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVEKYLNKEIKVDEYVTHSMNLTDINKAFDLLHEGGCLRCVLATD 380          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: ADHX_HUMAN (Alcohol dehydrogenase class-3 OS=Homo sapiens GN=ADH5 PE=1 SV=4)

HSP 1 Score: 116.316 bits (290), Expect = 4.896e-26
Identity = 52/118 (44.07%), Postives = 78/118 (66.10%), Query Frame = 1
Query:    1 MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISM 354
            MT+GGVD S EC GN+  M +A E  H GWGV+V+VGV +      T+P  ++  RT KGT FG +K    +P +V  YM+K++++++F+TH + F EINKAFE M  G+ +R ++ +
Sbjct:  257 MTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGEEIATRPFQLVTGRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHNLSFDEINKAFELMHSGKSIRTVVKI 374          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: ADHX_BOVIN (Alcohol dehydrogenase class-3 OS=Bos taurus GN=ADH5 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.424e-25
Identity = 49/118 (41.53%), Postives = 79/118 (66.95%), Query Frame = 1
Query:    1 MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISM 354
            MT+GGVD S EC GN+  M +A E  H GWG++V+VGV +      T+P  ++  RT KGT FG +K    +P +V  YM+K++++++F+TH +PF +IN+AF+ M  G+ +R ++ +
Sbjct:  257 MTDGGVDYSFECIGNVKVMRAALEACHKGWGISVVVGVAASGEEIATRPFQLVTGRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHSLPFDQINEAFDLMHAGKSIRTVVKL 374          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: ADHX_MAIZE (Alcohol dehydrogenase class-3 OS=Zea mays GN=FDH PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.860e-25
Identity = 50/119 (42.02%), Postives = 79/119 (66.39%), Query Frame = 1
Query:    1 MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISME 357
            +T+GGVD S EC GN+  M +A EC   GWG +V+VGV +      T+P  ++  R  KGT FG +K RT +P +VD YM K+++++++ITH +  ++IN AF  + +G  LRC+++M+
Sbjct:  262 LTDGGVDYSFECIGNVSIMRAALECSDKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRTQVPWLVDKYMKKEIKVDEYITHNMNLADINDAFHLLHEGGCLRCVLAMQ 380          
The following BLAST results are available for this feature:
BLAST of CX289113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
ADH2_HORVU1.618e-4570.83Alcohol dehydrogenase 2 OS=Hordeum vulgare GN=ADH2... [more]
ADHX_ARATH1.988e-2744.83Alcohol dehydrogenase class-3 OS=Arabidopsis thali... [more]
ADHX_PEA2.596e-2742.50Alcohol dehydrogenase class-3 OS=Pisum sativum PE=... [more]
ADHX_DICDI1.683e-2643.22Alcohol dehydrogenase class-3 OS=Dictyostelium dis... [more]
ADHX_UROHA2.197e-2644.83Alcohol dehydrogenase class-3 OS=Uromastyx hardwic... [more]
ADHX_ORYSJ2.197e-2641.18Alcohol dehydrogenase class-3 OS=Oryza sativa subs... [more]
ADHX_ORYSI2.197e-2641.18Alcohol dehydrogenase class-3 OS=Oryza sativa subs... [more]
ADHX_HUMAN4.896e-2644.07Alcohol dehydrogenase class-3 OS=Homo sapiens GN=A... [more]
ADHX_BOVIN1.424e-2541.53Alcohol dehydrogenase class-3 OS=Bos taurus GN=ADH... [more]
ADHX_MAIZE1.860e-2542.02Alcohol dehydrogenase class-3 OS=Zea mays GN=FDH P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02009C07SK IF1 Citrus clementina cDNA clone C02009C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289113 ID=CX289113; Name=CX289113; organism=Citrus clementina; type=EST; length=403bp
ATGACGAACGGTGGAGTTGACAGAAGTGTGGAGTGCACCGGCAACATTGA
TAACATGATCTCAGCCTTCGAGTGTGTTCATGATGGATGGGGTGTAGCTG
TGCTCGTTGGAGTGCCCAGTAAGGATGCAGTGTTCATGACCAAGCCAATC
AATGTACTTAACGAAAGAACCCTCAAAGGAACTTTCTTCGGGAACTACAA
ACCGCGGACTGATCTGCCCTCTGTCGTTGATATGTACATGAACAAGCAAC
TGGAACTAGAGAAGTTTATAACCCATCGCATCCCTTTCTCGGAAATCAAT
AAAGCCTTCGAGTACATGGTGAAAGGGGAGGGTTTGAGGTGCATTATCAG
CATGGAAGACTAGGAGTGAAAAAGGGAAAGAATAATCAAGTAAATAACAA
TAG
back to top