CX289113

Overview
NameCX289113
Unique NameCX289113
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length403
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: ADHX_OCTVU (Alcohol dehydrogenase class-3 OS=Octopus vulgaris PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.430e-25
Identity = 51/120 (42.50%), Postives = 79/120 (65.83%), Query Frame = 1
Query:    1 MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISMED 360
            MT+ GVD + EC GN+  M +A E  H GWG +V+VGV +      T+P  ++  R  KGT FG +K R  +P +VD YMNK+L L++F++H++ F +IN+AF+ M KGE +R ++ + +
Sbjct:  259 MTDVGVDFTFECIGNVGVMRAALESCHKGWGTSVIVGVAAHGEEISTRPFQLVTGRVWKGTAFGGFKSRDSVPKLVDDYMNKKLLLDEFVSHKLSFKKINEAFDLMHKGESIRAVLDIPE 378          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: ADHL6_ARATH (Alcohol dehydrogenase-like 6 OS=Arabidopsis thaliana GN=At5g24760 PE=2 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 2.430e-25
Identity = 53/118 (44.92%), Postives = 76/118 (64.41%), Query Frame = 1
Query:    1 MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISM 354
            MT GG D S EC G+     +A +   DGWG+ V +GVP             L+ ++LKGT FG +KP++DLPS++D YMNK++ +++FITH + F EINKAF  M +G+ LRC++ M
Sbjct:  262 MTGGGADFSFECVGDTGIATTALQSCSDGWGMTVTLGVPKAKPEVSAHYGLFLSGKSLKGTLFGGWKPKSDLPSLIDKYMNKEIMIDEFITHNLSFDEINKAFVLMREGKCLRCVLHM 379          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: ADHH_GADMO (Alcohol dehydrogenase class-3 chain H OS=Gadus morhua PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.430e-25
Identity = 49/117 (41.88%), Postives = 76/117 (64.96%), Query Frame = 1
Query:    1 MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIIS 351
            MT+GGVD S EC GN++ M SA E  H GWG +V++GV        T+P  ++  R  K T FG +K    +P +V+ YMNK+L++++F+TH +PF  IN+ F+ M  G+ +RC+++
Sbjct:  258 MTDGGVDYSFECIGNVEIMRSALEACHKGWGESVIIGVAGAGQEIATRPFQLVTGRVWKATAFGGWKSVESVPKLVEDYMNKKLKVDEFVTHTLPFDSINEGFDLMHAGKSIRCVLT 374          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: ADHX_HORSE (Alcohol dehydrogenase class-3 OS=Equus caballus GN=ADH5 PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 3.173e-25
Identity = 50/118 (42.37%), Postives = 78/118 (66.10%), Query Frame = 1
Query:    1 MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISM 354
            MT+GGVD S EC GN+  M +A E  H GWGV+V+VGV +      T+P  ++  RT KGT FG +K    +P +V  YM+K++++++F+TH + F +IN+AFE M  G+ +R ++ +
Sbjct:  257 MTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGEEIATRPFQLVTGRTWKGTAFGGWKSVESIPKLVSEYMSKKIKVDEFVTHSLSFDQINEAFELMHAGKSIRTVVKL 374          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: ADHL_GADMO (Alcohol dehydrogenase class-3 chain L OS=Gadus morhua PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.144e-25
Identity = 49/117 (41.88%), Postives = 78/117 (66.67%), Query Frame = 1
Query:    1 MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIIS 351
            MT+GGVD S EC GNI  M +A E  H GWG +V++GV +      T+P  ++  RT KGT FG YK    +P +V+ YMNK++++++F+TH +PF +I++ F+ M  G+ +R +++
Sbjct:  258 MTDGGVDYSFECVGNIAVMRAALEACHKGWGTSVIIGVAAAGQEISTRPFQLVTGRTWKGTAFGGYKSVESVPKLVEEYMNKKVKVDEFVTHTLPFEKIHEGFDLMGAGKSIRTVLN 374          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: ADHX_RAT (Alcohol dehydrogenase class-3 OS=Rattus norvegicus GN=Adh5 PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 9.233e-25
Identity = 51/118 (43.22%), Postives = 76/118 (64.41%), Query Frame = 1
Query:    1 MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISM 354
            MT+GGVD S EC GN+  M SA E  H GWGV+V+VGV +      T+P  ++  RT KGT FG +K    +P +V  YM+K++++++F+T  + F +INKAF+ M  G  +R ++ M
Sbjct:  257 MTDGGVDFSFECIGNVKVMRSALEAAHKGWGVSVVVGVAASGEEISTRPFQLVTGRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTGNLSFDQINKAFDLMHSGNSIRTVLKM 374          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: ADHX_MOUSE (Alcohol dehydrogenase class-3 OS=Mus musculus GN=Adh5 PE=1 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 1.206e-24
Identity = 50/118 (42.37%), Postives = 77/118 (65.25%), Query Frame = 1
Query:    1 MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISM 354
            MT+GGVD S EC GN+  M SA E  H GWGV+V+VGV +      T+P  ++  RT KGT FG +K    +P +V  YM+K++++++F+T  + F +IN+AF+ M  G+ +R ++ M
Sbjct:  257 MTDGGVDYSFECIGNVKVMRSALEAAHKGWGVSVVVGVAASGEEISTRPFQLVTGRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTGNLSFDQINQAFDLMHSGDSIRTVLKM 374          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: FADH_CANMA (S-(hydroxymethyl)glutathione dehydrogenase OS=Candida maltosa GN=FDH1 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.575e-24
Identity = 50/118 (42.37%), Postives = 77/118 (65.25%), Query Frame = 1
Query:    1 MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISM 354
            MT+GG D + +CTGN+  M +A E  H GWG +V++GV +      T+P  ++  RT KG  FG  K R+ LP +V+ Y++ +L++E+FITHR P + INKAFE M  G+ +R ++ +
Sbjct:  263 MTDGGCDFTFDCTGNVGVMRNALEACHKGWGTSVIIGVAAAGKEISTRPFQLVTGRTWKGAAFGGVKGRSQLPGIVNNYLDGKLKVEEFITHREPLAAINKAFEEMHAGDCIRAVVDL 380          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: ADHX_DROME (Alcohol dehydrogenase class-3 OS=Drosophila melanogaster GN=Fdh PE=1 SV=3)

HSP 1 Score: 110.538 bits (275), Expect = 2.686e-24
Identity = 49/116 (42.24%), Postives = 76/116 (65.52%), Query Frame = 1
Query:    1 MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCII 348
            +T+GG D + EC GN++ M SA E  H GWG +V++GV        T+P  ++  R  KG+ FG ++  +D+P +V+ Y+ K L +++FITH +P S+IN+AF+ M KGE +R II
Sbjct:  262 LTDGGFDYTFECIGNVNTMRSALEATHKGWGTSVVIGVAGAGQEISTRPFQLVVGRVWKGSAFGGWRSVSDVPKLVEDYLKKDLLVDEFITHELPLSQINEAFDLMHKGESIRSII 377          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: ADHX_SPAAU (Alcohol dehydrogenase class-3 OS=Sparus aurata PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.508e-24
Identity = 48/117 (41.03%), Postives = 76/117 (64.96%), Query Frame = 1
Query:    1 MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIIS 351
            MT+GGVD S EC GN+  M +A E  H GWG +V++GV        T+P  ++  R  KGT FG +K    +P +V+ YM+K+L++++F+TH +PF +IN+ FE M  G+ +R +++
Sbjct:  259 MTDGGVDYSFECIGNVQIMRAALEACHKGWGESVIIGVAGAGQEISTRPFQLVTGRVWKGTAFGGWKSVESVPKLVEDYMSKKLKVDEFVTHTLPFEKINEGFELMHAGKSIRTVLT 375          
The following BLAST results are available for this feature:
BLAST of CX289113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
ADHX_OCTVU2.430e-2542.50Alcohol dehydrogenase class-3 OS=Octopus vulgaris ... [more]
ADHL6_ARATH2.430e-2544.92Alcohol dehydrogenase-like 6 OS=Arabidopsis thalia... [more]
ADHH_GADMO2.430e-2541.88Alcohol dehydrogenase class-3 chain H OS=Gadus mor... [more]
ADHX_HORSE3.173e-2542.37Alcohol dehydrogenase class-3 OS=Equus caballus GN... [more]
ADHL_GADMO4.144e-2541.88Alcohol dehydrogenase class-3 chain L OS=Gadus mor... [more]
ADHX_RAT9.233e-2543.22Alcohol dehydrogenase class-3 OS=Rattus norvegicus... [more]
ADHX_MOUSE1.206e-2442.37Alcohol dehydrogenase class-3 OS=Mus musculus GN=A... [more]
FADH_CANMA1.575e-2442.37S-(hydroxymethyl)glutathione dehydrogenase OS=Cand... [more]
ADHX_DROME2.686e-2442.24Alcohol dehydrogenase class-3 OS=Drosophila melano... [more]
ADHX_SPAAU3.508e-2441.03Alcohol dehydrogenase class-3 OS=Sparus aurata PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02009C07SK IF1 Citrus clementina cDNA clone C02009C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289113 ID=CX289113; Name=CX289113; organism=Citrus clementina; type=EST; length=403bp
ATGACGAACGGTGGAGTTGACAGAAGTGTGGAGTGCACCGGCAACATTGA
TAACATGATCTCAGCCTTCGAGTGTGTTCATGATGGATGGGGTGTAGCTG
TGCTCGTTGGAGTGCCCAGTAAGGATGCAGTGTTCATGACCAAGCCAATC
AATGTACTTAACGAAAGAACCCTCAAAGGAACTTTCTTCGGGAACTACAA
ACCGCGGACTGATCTGCCCTCTGTCGTTGATATGTACATGAACAAGCAAC
TGGAACTAGAGAAGTTTATAACCCATCGCATCCCTTTCTCGGAAATCAAT
AAAGCCTTCGAGTACATGGTGAAAGGGGAGGGTTTGAGGTGCATTATCAG
CATGGAAGACTAGGAGTGAAAAAGGGAAAGAATAATCAAGTAAATAACAA
TAG
back to top