CX289113

Overview
NameCX289113
Unique NameCX289113
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length403
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: FADH_PARDE (S-(hydroxymethyl)glutathione dehydrogenase OS=Paracoccus denitrificans GN=flhA PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.582e-24
Identity = 47/113 (41.59%), Postives = 70/113 (61.95%), Query Frame = 1
Query:   10 GGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCII 348
            GG D S +CTGN+  M  A EC H GWG ++++GV    A   T+P  ++  R  KGT FG  + RTD+P +VD YM+ ++E++  ITH +   +INK F+ M  GE +R ++
Sbjct:  261 GGADYSFDCTGNVKVMRDALECTHRGWGQSIIIGVAPAGAEISTRPFQLVTGRVWKGTAFGGARGRTDVPQIVDWYMDGKIEIDPMITHTLSLDDINKGFDLMHAGESIRSVV 373          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: ADHX_CAEEL (Alcohol dehydrogenase class-3 OS=Caenorhabditis elegans GN=H24K24.3 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.021e-23
Identity = 50/117 (42.74%), Postives = 72/117 (61.54%), Query Frame = 1
Query:    7 NGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISME 357
            +GG D + EC GN+  M  A E  H GWGV+ ++GV        T+P  ++  RT KGT FG +K    +P +VD YMNK+L +++FITHR    +IN AF+ + KGE LR +++ E
Sbjct:  266 DGGFDYTFECIGNVHTMRQALEAAHKGWGVSCIIGVAGAGQEIATRPFQLVTGRTWKGTAFGGWKSVESVPRLVDDYMNKKLLIDEFITHRWNIDDINTAFDVLHKGESLRSVLAFE 382          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: ADHX_RABIT (Alcohol dehydrogenase class-3 OS=Oryctolagus cuniculus GN=ADH5 PE=2 SV=3)

HSP 1 Score: 107.457 bits (267), Expect = 2.274e-23
Identity = 48/117 (41.03%), Postives = 75/117 (64.10%), Query Frame = 1
Query:    4 TNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISM 354
            T+GGVD S EC GN+  M +A E  H GWGV+V+VGV        T+P  ++  RT KGT FG +K    +P +V  YM+K++ +++F+T+ + F +IN+AFE M  G+ +R ++ +
Sbjct:  258 TDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAGAGEEISTRPFQLVTGRTWKGTAFGGWKSVESVPKLVSEYMSKKINVDEFVTNTLSFDQINEAFELMHSGKSIRTVVKI 374          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: ADH1_GADCA (Alcohol dehydrogenase 1 OS=Gadus callarias PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.274e-23
Identity = 52/119 (43.70%), Postives = 79/119 (66.39%), Query Frame = 1
Query:    1 MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISME 357
            MTNGGVD S+EC GN+  M +A E    GWGV+VLVG      V  T+PI ++  RT KG+ FG +K +  +P +V  Y++K+++L++FITHR+P   +N A + M  G+ +R ++S+E
Sbjct:  258 MTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWTDLHDV-ATRPIQLIAGRTWKGSMFGGFKGKDGVPKMVKAYLDKKVKLDEFITHRMPLESVNDAIDLMKHGKCIRTVLSLE 375          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: ADHL3_ARATH (Alcohol dehydrogenase-like 3 OS=Arabidopsis thaliana GN=At1g32780 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.514e-22
Identity = 48/118 (40.68%), Postives = 71/118 (60.17%), Query Frame = 1
Query:    1 MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISM 354
            +T GGVD S ECTGN+D +  AF   H GWG  VLVG+          P+ + + R + G+ FG +KP++ LP+     M   ++LE FIT+ +PF +IN AF+ +  G+ LRCI+ +
Sbjct:  271 ITGGGVDYSFECTGNVDVLREAFLSTHVGWGSTVLVGIYPTPRTLPLHPMELFDGRRITGSVFGGFKPKSQLPNFAQQCMKGVVKLEPFITNELPFEKINDAFQLLRDGKSLRCILQI 388          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: ADHX_MYXGL (Alcohol dehydrogenase class-3 OS=Myxine glutinosa PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.289e-22
Identity = 45/118 (38.14%), Postives = 74/118 (62.71%), Query Frame = 1
Query:    1 MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISM 354
            MT+GG+D + EC GN+  M +A E  H GWGV+V++GV        T+P  ++  RT KG  FG +K    +P +VD YM  ++ +++F++H +PF  IN+AF+ M  G+ +R ++ +
Sbjct:  259 MTDGGLDYTFECVGNVGIMRAALESCHKGWGVSVILGVAGGGQEISTRPFQLVTGRTWKGAAFGGWKSVESVPKLVDDYMAGKIMVDEFVSHSLPFDSINEAFDLMHAGKSIRTVLQL 376          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: FRMA_SYNY3 (S-(hydroxymethyl)glutathione dehydrogenase OS=Synechocystis sp. (strain PCC 6803) GN=frmA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.601e-22
Identity = 47/116 (40.52%), Postives = 69/116 (59.48%), Query Frame = 1
Query:    1 MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCII 348
            MT  GVD S EC GN++ M SA EC H GWG +V++GV        T+P  ++  R   GT FG  K R+ LP +V+  M  +++L  F+TH +   +IN+AF+ M  G+ +R +I
Sbjct:  252 MTGWGVDHSFECIGNVEVMRSALECAHRGWGQSVIIGVAGAGQEISTRPFQLVTGRKWMGTAFGGVKGRSQLPGMVEQSMRGEIQLAPFVTHTMELKDINQAFDLMHDGKSIRSVI 367          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: FADH2_SCHPO (Putative S-(hydroxymethyl)glutathione dehydrogenase 2 OS=Schizosaccharomyces pombe GN=SPCC13B11.04c PE=2 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 5.601e-22
Identity = 46/117 (39.32%), Postives = 74/117 (63.25%), Query Frame = 1
Query:    4 TNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISM 354
            T+GG+D + +CTGN+  M SA E  H GWG ++++GV +      T+P  ++  R  +G  FG  K R+ LP +V  Y++ +LE++K+ITHR P  EIN+AF  M  G  ++ ++S+
Sbjct:  263 TDGGLDWTFDCTGNVHVMRSALEACHKGWGQSIVIGVAAAGQEISTRPFQLVTGRVWRGCAFGGVKGRSQLPDLVKEYLDHKLEIDKYITHRRPLKEINEAFTDMHNGNCIKTVLSI 379          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: ADHI_RHOS4 (Alcohol dehydrogenase class-3 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=adhI PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.554e-22
Identity = 44/113 (38.94%), Postives = 68/113 (60.18%), Query Frame = 1
Query:   10 GGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCII 348
            GG D + +CTGN+  M  A E  H GWG ++++GV    A   T+P  ++  R  KG+ FG  + RTD+P +VD YM  +++++  ITH +   EINK F+ M  GE +R ++
Sbjct:  262 GGADYTFDCTGNVKVMRQALEACHRGWGQSIVIGVAPAGAEIQTRPFQLVTGRVWKGSAFGGARGRTDVPKIVDWYMEGKIQIDPMITHILSLEEINKGFDLMHAGESIRSVV 374          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: FADH_YEAST (S-(hydroxymethyl)glutathione dehydrogenase OS=Saccharomyces cerevisiae GN=SFA1 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.248e-21
Identity = 46/120 (38.33%), Postives = 74/120 (61.67%), Query Frame = 1
Query:    1 MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISMED 360
            MT+GG+D + +CTGN   M  A E  H GWG ++++GV +      T+P  ++  R  KG+ FG  K R+++  ++  Y    L++E+FITHR PF EIN+AFE +  G+ LR ++  ++
Sbjct:  265 MTDGGLDFTFDCTGNTKIMRDALEACHKGWGQSIIIGVAAAGEEISTRPFQLVTGRVWKGSAFGGIKGRSEMGGLIKDYQKGALKVEEFITHRRPFKEINQAFEDLHNGDCLRTVLKSDE 384          
The following BLAST results are available for this feature:
BLAST of CX289113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
FADH_PARDE4.582e-2441.59S-(hydroxymethyl)glutathione dehydrogenase OS=Para... [more]
ADHX_CAEEL1.021e-2342.74Alcohol dehydrogenase class-3 OS=Caenorhabditis el... [more]
ADHX_RABIT2.274e-2341.03Alcohol dehydrogenase class-3 OS=Oryctolagus cunic... [more]
ADH1_GADCA2.274e-2343.70Alcohol dehydrogenase 1 OS=Gadus callarias PE=1 SV... [more]
ADHL3_ARATH2.514e-2240.68Alcohol dehydrogenase-like 3 OS=Arabidopsis thalia... [more]
ADHX_MYXGL4.289e-2238.14Alcohol dehydrogenase class-3 OS=Myxine glutinosa ... [more]
FRMA_SYNY35.601e-2240.52S-(hydroxymethyl)glutathione dehydrogenase OS=Syne... [more]
FADH2_SCHPO5.601e-2239.32Putative S-(hydroxymethyl)glutathione dehydrogenas... [more]
ADHI_RHOS49.554e-2238.94Alcohol dehydrogenase class-3 OS=Rhodobacter sphae... [more]
FADH_YEAST1.248e-2138.33S-(hydroxymethyl)glutathione dehydrogenase OS=Sacc... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02009C07SK IF1 Citrus clementina cDNA clone C02009C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289113 ID=CX289113; Name=CX289113; organism=Citrus clementina; type=EST; length=403bp
ATGACGAACGGTGGAGTTGACAGAAGTGTGGAGTGCACCGGCAACATTGA
TAACATGATCTCAGCCTTCGAGTGTGTTCATGATGGATGGGGTGTAGCTG
TGCTCGTTGGAGTGCCCAGTAAGGATGCAGTGTTCATGACCAAGCCAATC
AATGTACTTAACGAAAGAACCCTCAAAGGAACTTTCTTCGGGAACTACAA
ACCGCGGACTGATCTGCCCTCTGTCGTTGATATGTACATGAACAAGCAAC
TGGAACTAGAGAAGTTTATAACCCATCGCATCCCTTTCTCGGAAATCAAT
AAAGCCTTCGAGTACATGGTGAAAGGGGAGGGTTTGAGGTGCATTATCAG
CATGGAAGACTAGGAGTGAAAAAGGGAAAGAATAATCAAGTAAATAACAA
TAG
back to top