CX289113

Overview
NameCX289113
Unique NameCX289113
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length403
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: FRMA_PASPI (S-(hydroxymethyl)glutathione dehydrogenase OS=Pasteurella piscicida GN=frmA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.630e-21
Identity = 48/116 (41.38%), Postives = 70/116 (60.34%), Query Frame = 1
Query:    1 MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCII 348
            MT  GVD + EC GN++ M SA E  H GWG +V++GV        T+P  ++  R  KGT FG  K RT LP +V+  M+ ++EL  F+TH +   +IN+AF+ M  G+ +R +I
Sbjct:  252 MTKWGVDHTFECIGNVNVMRSALESAHRGWGQSVIIGVAGAGKEISTRPFQLVTGRVWKGTAFGGVKGRTQLPGMVEDAMSGKIELAPFVTHTMELDKINEAFDLMHDGKSIRTVI 367          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: ADH1E_HORSE (Alcohol dehydrogenase E chain OS=Equus caballus PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 2.780e-21
Identity = 46/117 (39.32%), Postives = 72/117 (61.54%), Query Frame = 1
Query:    1 MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIIS 351
            M+NGGVD S E  G +D M++A  C  + +GV+V+VGVP         P+ +L+ RT KG  FG +K +  +P +V  +M K+  L+  ITH +PF +IN+ F+ +  GE +R I++
Sbjct:  258 MSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLSMNPMLLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINEGFDLLRSGESIRTILT 374          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: FADH_PICPA (S-(hydroxymethyl)glutathione dehydrogenase OS=Pichia pastoris GN=FLD1 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.631e-21
Identity = 45/118 (38.14%), Postives = 73/118 (61.86%), Query Frame = 1
Query:    1 MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISM 354
            +T+GG D + +CTGN+  M +A E  H GWG ++++GV +      T+P  ++  R  +G  FG  K RT +PS+V  Y++ ++++++FITHR     INKAF  M  G  +R +I+M
Sbjct:  261 ITDGGFDYTFDCTGNVQVMRNALESCHKGWGESIIIGVAAAGKEISTRPFQLVTGRVWRGCAFGGIKGRTQMPSLVQDYLDGKIKVDEFITHRHDLDNINKAFHDMHAGNCIRAVITM 378          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: ADH1_ALLMI (Alcohol dehydrogenase 1 OS=Alligator mississippiensis PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.742e-21
Identity = 46/117 (39.32%), Postives = 69/117 (58.97%), Query Frame = 1
Query:    1 MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIIS 351
            MT GGVD S E  G ID M +A  C  D +G +V+VGVP         P+ +   RT KG+ FG +K +  +P +V  YM K++ L+  ITH +PF +IN+ FE +  G+ +R +++
Sbjct:  257 MTGGGVDYSFEVIGRIDTMTAALACCQDNYGTSVIVGVPPASEKITFNPMMLFTGRTWKGSVFGGWKSKESVPKLVADYMEKKINLDGLITHTLPFDKINEGFELLRTGKSIRSVLT 373          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: ADHL5_ARATH (Alcohol dehydrogenase-like 5 OS=Arabidopsis thaliana GN=At4g22110 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.193e-21
Identity = 49/118 (41.53%), Postives = 69/118 (58.47%), Query Frame = 1
Query:    1 MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISM 354
            MT GGVD S EC G    +  AF     G G  V++G+            ++L  R + G+ FG  KP+ D+P +VD Y+ K+L L+ FITH + F EINKAF+ +V+G+ LRCI+ M
Sbjct:  270 MTGGGVDYSFECVGLPSLLTEAFSSTRTGSGKTVVLGIDKHLTPVSLGSFDLLRGRHVCGSLFGGLKPKLDIPILVDHYLKKELNLDSFITHELKFEEINKAFDLLVQGKSLRCILWM 387          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: FRMA_HAEIN (S-(hydroxymethyl)glutathione dehydrogenase OS=Haemophilus influenzae GN=frmA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 8.088e-21
Identity = 43/112 (38.39%), Postives = 69/112 (61.61%), Query Frame = 1
Query:   13 GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCII 348
            G+D + EC GN++ M  A E  H GWG ++++GV        T+P  ++  R  KG+ FG  K R++LP +V+  M   ++LE F+TH +P  +IN+AFE M +G+ +R +I
Sbjct:  265 GIDHTFECIGNVNVMRQALESAHRGWGQSIIIGVAGAGQEISTRPFQLVTGRVWKGSAFGGVKGRSELPQMVEDSMKGDIQLEPFVTHTMPLDKINEAFELMHEGKSIRTVI 376          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: ADH1S_HORSE (Alcohol dehydrogenase S chain OS=Equus caballus PE=1 SV=3)

HSP 1 Score: 98.9821 bits (245), Expect = 8.088e-21
Identity = 45/117 (38.46%), Postives = 72/117 (61.54%), Query Frame = 1
Query:    1 MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIIS 351
            M+NGGVD S E  G +D M++A  C  + +GV+V+VGVP         P+ +L+ RT KG  FG +K +  +P +V  +M K+  L+  ITH +PF +IN+ F+ +  G+ +R I++
Sbjct:  257 MSNGGVDFSFEVIGRLDTMVAALSCCQEAYGVSVIVGVPPDSQNLSMNPMLLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINEGFDLLRSGKSIRTILT 373          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: ADHL2_ARATH (Alcohol dehydrogenase-like 2 OS=Arabidopsis thaliana GN=At1g22440 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.056e-20
Identity = 49/119 (41.18%), Postives = 68/119 (57.14%), Query Frame = 1
Query:    1 MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISME 357
            MT+ G D S EC G    M  AF+    G G  +++G+  K         ++L  RT+ GT FG  KP+ D+P +VD Y+ K+L LE  ITH + F EINKAF  + +G  +RCII M+
Sbjct:  267 MTDVGADYSFECIGLASLMEEAFKSTRPGSGKTIVLGMEQKALPISLGSYDLLRGRTVCGTLFGGLKPKLDIPILVDRYLKKELNLEDLITHELSFEEINKAFHLLAEGNSIRCIIWMD 385          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: ADH4_STRCA (Alcohol dehydrogenase 4 OS=Struthio camelus GN=ADH4 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.353e-20
Identity = 47/116 (40.52%), Postives = 69/116 (59.48%), Query Frame = 1
Query:    1 MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCII 348
            MTNGGVD ++EC GN D M +AFE    GWG  V+VGV   +      P+ ++  R +K TFFG +K    +P +V  YM K+ +L+  ++H +P  +IN AF+ M  G+  R I+
Sbjct:  262 MTNGGVDFAIECIGNPDVMKAAFESTTVGWGTCVIVGVAVGEQSIPFSPMQLIMGRKIKATFFGGWKSVKSVPKLVSDYMAKKFDLDALVSHTLPLDKINDAFDLMNAGKSNRTIL 377          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: FADH1_SCHPO (Probable S-(hydroxymethyl)glutathione dehydrogenase 1 OS=Schizosaccharomyces pombe GN=SPBC1539.07c PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 4.014e-20
Identity = 43/118 (36.44%), Postives = 72/118 (61.02%), Query Frame = 1
Query:    1 MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISM 354
            +T+GGVD + +CTGN+  M    +  H GWG   ++GV +       +P  V+  R + G+ FG  K R++LP+ VD YM    +++++IT+  P   INKAF++M +G+ +RC++ M
Sbjct:  258 VTDGGVDYAFDCTGNVTVMQQELQFCHKGWGKLCVIGVAAAGKTLDFRPFLVVTGRQVLGSAFGGVKGRSELPNFVDEYMQGHFKVDEYITNEEPLKNINKAFDHMHEGKCIRCVVDM 375          
The following BLAST results are available for this feature:
BLAST of CX289113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
FRMA_PASPI1.630e-2141.38S-(hydroxymethyl)glutathione dehydrogenase OS=Past... [more]
ADH1E_HORSE2.780e-2139.32Alcohol dehydrogenase E chain OS=Equus caballus PE... [more]
FADH_PICPA3.631e-2138.14S-(hydroxymethyl)glutathione dehydrogenase OS=Pich... [more]
ADH1_ALLMI4.742e-2139.32Alcohol dehydrogenase 1 OS=Alligator mississippien... [more]
ADHL5_ARATH6.193e-2141.53Alcohol dehydrogenase-like 5 OS=Arabidopsis thalia... [more]
FRMA_HAEIN8.088e-2138.39S-(hydroxymethyl)glutathione dehydrogenase OS=Haem... [more]
ADH1S_HORSE8.088e-2138.46Alcohol dehydrogenase S chain OS=Equus caballus PE... [more]
ADHL2_ARATH1.056e-2041.18Alcohol dehydrogenase-like 2 OS=Arabidopsis thalia... [more]
ADH4_STRCA2.353e-2040.52Alcohol dehydrogenase 4 OS=Struthio camelus GN=ADH... [more]
FADH1_SCHPO4.014e-2036.44Probable S-(hydroxymethyl)glutathione dehydrogenas... [more]

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Properties
Property NameValue
Genbank descriptionC02009C07SK IF1 Citrus clementina cDNA clone C02009C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289113 ID=CX289113; Name=CX289113; organism=Citrus clementina; type=EST; length=403bp
ATGACGAACGGTGGAGTTGACAGAAGTGTGGAGTGCACCGGCAACATTGA
TAACATGATCTCAGCCTTCGAGTGTGTTCATGATGGATGGGGTGTAGCTG
TGCTCGTTGGAGTGCCCAGTAAGGATGCAGTGTTCATGACCAAGCCAATC
AATGTACTTAACGAAAGAACCCTCAAAGGAACTTTCTTCGGGAACTACAA
ACCGCGGACTGATCTGCCCTCTGTCGTTGATATGTACATGAACAAGCAAC
TGGAACTAGAGAAGTTTATAACCCATCGCATCCCTTTCTCGGAAATCAAT
AAAGCCTTCGAGTACATGGTGAAAGGGGAGGGTTTGAGGTGCATTATCAG
CATGGAAGACTAGGAGTGAAAAAGGGAAAGAATAATCAAGTAAATAACAA
TAG
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