CX289113

Overview
NameCX289113
Unique NameCX289113
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length403
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: ADH1A_MACMU (Alcohol dehydrogenase 1A OS=Macaca mulatta GN=ADH1A PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 4.014e-20
Identity = 44/117 (37.61%), Postives = 71/117 (60.68%), Query Frame = 1
Query:    1 MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIIS 351
            MT+GGVD S E  G +D M+++  C H+  G +V+VGVP         P+ +L  RT KG  +G +K + D+P +V  +M K+  L+  ITH +PF +IN+ F+ +  G+ +R I++
Sbjct:  258 MTDGGVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPPDSQNLSINPMLLLTGRTWKGAVYGGFKSKEDIPKLVADFMAKKFSLDALITHVLPFEKINEGFDLLRSGKSIRTILT 374          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: FRMA_SHISS (S-(hydroxymethyl)glutathione dehydrogenase OS=Shigella sonnei (strain Ss046) GN=frmA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.847e-20
Identity = 43/112 (38.39%), Postives = 67/112 (59.82%), Query Frame = 1
Query:   13 GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCII 348
            G+D + EC GN++ M +A E  H GWG +V++GV        T+P  ++  R  KG+ FG  K R+ LP +V+  M   ++LE F+TH +   EIN AF+ M +G+ +R +I
Sbjct:  256 GIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVAGSGQEISTRPFQLVTGRVWKGSAFGGVKGRSQLPGMVEDAMKGDIDLEPFVTHTMSLDEINDAFDLMHEGKSIRTVI 367          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: FRMA_ECOUT (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli (strain UTI89 / UPEC) GN=frmA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.847e-20
Identity = 43/112 (38.39%), Postives = 67/112 (59.82%), Query Frame = 1
Query:   13 GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCII 348
            G+D + EC GN++ M +A E  H GWG +V++GV        T+P  ++  R  KG+ FG  K R+ LP +V+  M   ++LE F+TH +   EIN AF+ M +G+ +R +I
Sbjct:  256 GIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVAGSGQEISTRPFQLVTGRVWKGSAFGGVKGRSQLPGMVEDAMKGDIDLEPFVTHTMSLDEINDAFDLMHEGKSIRTVI 367          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: FRMA_ECOSM (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=frmA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.847e-20
Identity = 43/112 (38.39%), Postives = 67/112 (59.82%), Query Frame = 1
Query:   13 GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCII 348
            G+D + EC GN++ M +A E  H GWG +V++GV        T+P  ++  R  KG+ FG  K R+ LP +V+  M   ++LE F+TH +   EIN AF+ M +G+ +R +I
Sbjct:  256 GIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVAGSGQEISTRPFQLVTGRVWKGSAFGGVKGRSQLPGMVEDAMKGDIDLEPFVTHTMSLDEINDAFDLMHEGKSIRTVI 367          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: FRMA_ECOLC (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=frmA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.847e-20
Identity = 43/112 (38.39%), Postives = 67/112 (59.82%), Query Frame = 1
Query:   13 GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCII 348
            G+D + EC GN++ M +A E  H GWG +V++GV        T+P  ++  R  KG+ FG  K R+ LP +V+  M   ++LE F+TH +   EIN AF+ M +G+ +R +I
Sbjct:  256 GIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVAGSGQEISTRPFQLVTGRVWKGSAFGGVKGRSQLPGMVEDAMKGDIDLEPFVTHTMSLDEINDAFDLMHEGKSIRTVI 367          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: FRMA_ECOL6 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O6 GN=frmA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.847e-20
Identity = 43/112 (38.39%), Postives = 67/112 (59.82%), Query Frame = 1
Query:   13 GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCII 348
            G+D + EC GN++ M +A E  H GWG +V++GV        T+P  ++  R  KG+ FG  K R+ LP +V+  M   ++LE F+TH +   EIN AF+ M +G+ +R +I
Sbjct:  256 GIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVAGSGQEISTRPFQLVTGRVWKGSAFGGVKGRSQLPGMVEDAMKGDIDLEPFVTHTMSLDEINDAFDLMHEGKSIRTVI 367          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: FRMA_ECOL5 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=frmA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.847e-20
Identity = 43/112 (38.39%), Postives = 67/112 (59.82%), Query Frame = 1
Query:   13 GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCII 348
            G+D + EC GN++ M +A E  H GWG +V++GV        T+P  ++  R  KG+ FG  K R+ LP +V+  M   ++LE F+TH +   EIN AF+ M +G+ +R +I
Sbjct:  256 GIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVAGSGQEISTRPFQLVTGRVWKGSAFGGVKGRSQLPGMVEDAMKGDIDLEPFVTHTMSLDEINDAFDLMHEGKSIRTVI 367          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: FRMA_ECOK1 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O1:K1 / APEC GN=frmA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.847e-20
Identity = 43/112 (38.39%), Postives = 67/112 (59.82%), Query Frame = 1
Query:   13 GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCII 348
            G+D + EC GN++ M +A E  H GWG +V++GV        T+P  ++  R  KG+ FG  K R+ LP +V+  M   ++LE F+TH +   EIN AF+ M +G+ +R +I
Sbjct:  256 GIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVAGSGQEISTRPFQLVTGRVWKGSAFGGVKGRSQLPGMVEDAMKGDIDLEPFVTHTMSLDEINDAFDLMHEGKSIRTVI 367          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: FRMA_ECOHS (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O9:H4 (strain HS) GN=frmA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.847e-20
Identity = 43/112 (38.39%), Postives = 67/112 (59.82%), Query Frame = 1
Query:   13 GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCII 348
            G+D + EC GN++ M +A E  H GWG +V++GV        T+P  ++  R  KG+ FG  K R+ LP +V+  M   ++LE F+TH +   EIN AF+ M +G+ +R +I
Sbjct:  256 GIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVAGSGQEISTRPFQLVTGRVWKGSAFGGVKGRSQLPGMVEDAMKGDIDLEPFVTHTMSLDEINDAFDLMHEGKSIRTVI 367          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: FRMA_ECO57 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O157:H7 GN=frmA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.847e-20
Identity = 43/112 (38.39%), Postives = 67/112 (59.82%), Query Frame = 1
Query:   13 GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCII 348
            G+D + EC GN++ M +A E  H GWG +V++GV        T+P  ++  R  KG+ FG  K R+ LP +V+  M   ++LE F+TH +   EIN AF+ M +G+ +R +I
Sbjct:  256 GIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVAGSGQEISTRPFQLVTGRVWKGSAFGGVKGRSQLPGMVEDAMKGDIDLEPFVTHTMSLDEINDAFDLMHEGKSIRTVI 367          
The following BLAST results are available for this feature:
BLAST of CX289113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
ADH1A_MACMU4.014e-2037.61Alcohol dehydrogenase 1A OS=Macaca mulatta GN=ADH1... [more]
FRMA_SHISS6.847e-2038.39S-(hydroxymethyl)glutathione dehydrogenase OS=Shig... [more]
FRMA_ECOUT6.847e-2038.39S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECOSM6.847e-2038.39S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECOLC6.847e-2038.39S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECOL66.847e-2038.39S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECOL56.847e-2038.39S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECOK16.847e-2038.39S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECOHS6.847e-2038.39S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECO576.847e-2038.39S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]

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Properties
Property NameValue
Genbank descriptionC02009C07SK IF1 Citrus clementina cDNA clone C02009C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289113 ID=CX289113; Name=CX289113; organism=Citrus clementina; type=EST; length=403bp
ATGACGAACGGTGGAGTTGACAGAAGTGTGGAGTGCACCGGCAACATTGA
TAACATGATCTCAGCCTTCGAGTGTGTTCATGATGGATGGGGTGTAGCTG
TGCTCGTTGGAGTGCCCAGTAAGGATGCAGTGTTCATGACCAAGCCAATC
AATGTACTTAACGAAAGAACCCTCAAAGGAACTTTCTTCGGGAACTACAA
ACCGCGGACTGATCTGCCCTCTGTCGTTGATATGTACATGAACAAGCAAC
TGGAACTAGAGAAGTTTATAACCCATCGCATCCCTTTCTCGGAAATCAAT
AAAGCCTTCGAGTACATGGTGAAAGGGGAGGGTTTGAGGTGCATTATCAG
CATGGAAGACTAGGAGTGAAAAAGGGAAAGAATAATCAAGTAAATAACAA
TAG
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