CX289113

Overview
NameCX289113
Unique NameCX289113
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length403
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: FRMA_ECO24 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=frmA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.847e-20
Identity = 43/112 (38.39%), Postives = 67/112 (59.82%), Query Frame = 1
Query:   13 GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCII 348
            G+D + EC GN++ M +A E  H GWG +V++GV        T+P  ++  R  KG+ FG  K R+ LP +V+  M   ++LE F+TH +   EIN AF+ M +G+ +R +I
Sbjct:  256 GIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVAGSGQEISTRPFQLVTGRVWKGSAFGGVKGRSQLPGMVEDAMKGDIDLEPFVTHTMSLDEINDAFDLMHEGKSIRTVI 367          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: ADHL1_ARATH (Alcohol dehydrogenase-like 1 OS=Arabidopsis thaliana GN=At1g22430 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.847e-20
Identity = 48/119 (40.34%), Postives = 68/119 (57.14%), Query Frame = 1
Query:    1 MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISME 357
            MT GGVD S EC G    +  AF     G G  V++G+    A       ++L  R + G+ FG  K + D+P +VD Y+ K+L L+ FITH + F EINKAF  + +G+ LRCI+ M+
Sbjct:  269 MTEGGVDYSFECVGLASLLNEAFISTRTGTGKTVMLGMEKHAAPISLGSFDLLRGRVICGSLFGGLKSKLDIPILVDHYLKKELNLDSFITHELNFKEINKAFALLEEGKSLRCILWMD 387          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: ADH1_GEOKN (Alcohol dehydrogenase 1 OS=Geomys knoxjonesi GN=ADH1 PE=2 SV=3)

HSP 1 Score: 95.9005 bits (237), Expect = 6.847e-20
Identity = 46/117 (39.32%), Postives = 72/117 (61.54%), Query Frame = 1
Query:    1 MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIIS 351
            MT+GGVD S E  G +D M+SA  C  +  GV+V+VGVP         P+ +L+ R+ KG  FG YK + D+P +V  +M K+  LE  IT+  PF++IN+ F+ +  G+ +R +++
Sbjct:  258 MTDGGVDFSFEVIGRLDTMVSALMCCQESHGVSVIVGVPPNAQSLTMDPMVLLSGRSWKGAVFGGYKGKDDVPKLVADFMAKKFPLEPLITNVFPFAKINEGFDLLRAGKSIRTVLT 374          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: ADH1_GEOBU (Alcohol dehydrogenase 1 OS=Geomys bursarius GN=ADH1 PE=2 SV=3)

HSP 1 Score: 95.9005 bits (237), Expect = 6.847e-20
Identity = 46/117 (39.32%), Postives = 72/117 (61.54%), Query Frame = 1
Query:    1 MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIIS 351
            MT+GGVD S E  G +D M+SA  C  +  GV+V+VGVP         P+ +L+ R+ KG  FG YK + D+P +V  +M K+  LE  IT+  PF++IN+ F+ +  G+ +R +++
Sbjct:  258 MTDGGVDFSFEVIGRLDTMVSALMCCQESHGVSVIVGVPPNAQSLTMDPMVLLSGRSWKGAVFGGYKGKDDVPKLVADFMAKKFPLEPLITNVFPFAKINEGFDLLRAGKSIRTVLT 374          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: ADH1_RAT (Alcohol dehydrogenase 1 OS=Rattus norvegicus GN=Adh1 PE=1 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 8.942e-20
Identity = 47/117 (40.17%), Postives = 70/117 (59.83%), Query Frame = 1
Query:    1 MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIIS 351
            MT+GGVD S E  G +D M SA    H   GV+V+VGVP         P+++L  RT KG  FG +K +  +P +V  +M K+  LE  ITH +PF +IN+AF+ +  G+ +R +++
Sbjct:  259 MTDGGVDFSFEVIGRLDTMTSALLSCHSACGVSVIVGVPPSAQSLSVNPMSLLLGRTWKGAIFGGFKSKDAVPKLVADFMAKKFPLEPLITHVLPFEKINEAFDLLRAGKSIRTVLT 375          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: FRMA_ECOLI (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli (strain K12) GN=frmA PE=1 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 1.525e-19
Identity = 43/112 (38.39%), Postives = 67/112 (59.82%), Query Frame = 1
Query:   13 GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCII 348
            G+D + EC GN++ M +A E  H GWG +V++GV        T+P  ++  R  KG+ FG  K R+ LP +V+  M   ++LE F+TH +   EIN AF+ M +G+ +R +I
Sbjct:  256 GIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVAVAGQEISTRPFQLVTGRVWKGSAFGGVKGRSQLPGMVEDAMKGDIDLEPFVTHTMSLDEINDAFDLMHEGKSIRTVI 367          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: ADH1B_PAPHA (Alcohol dehydrogenase 1B OS=Papio hamadryas GN=ADH1B PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 1.525e-19
Identity = 43/117 (36.75%), Postives = 70/117 (59.83%), Query Frame = 1
Query:    1 MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIIS 351
            MT+GGVD S E  G +D M+++  C H+  G +V+VGVP         P+ +L  RT KG  +G +K R  +P +V  +M K+  L+  ITH +PF +IN+ F+ +  G+ +R +++
Sbjct:  258 MTDGGVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPPDSQNLSINPMLLLTGRTWKGAVYGGFKSREGIPKLVADFMAKKFSLDALITHVLPFEKINEGFDLLRSGKSIRTVLT 374          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: ADHL7_ARATH (Alcohol dehydrogenase-like 7 OS=Arabidopsis thaliana GN=At5g42250 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.602e-19
Identity = 42/119 (35.29%), Postives = 71/119 (59.66%), Query Frame = 1
Query:    1 MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNE-RTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISM 354
            MT+GG D   EC G+   +  A+ C   GWG  + +GV    +       +VL+  + L G+ FG  K +T +P ++  Y++ +LEL+KF+TH + F EIN AF+ +++G+ +RC++ M
Sbjct:  271 MTDGGADYCFECVGSSSLVQEAYACCRQGWGKTITLGVDKPGSQICLDSFDVLHHGKILMGSLFGGLKAKTHIPILLKRYLSNELELDKFVTHEMKFEEINDAFQLLLEGKCIRCVLWM 389          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: ADH4_HUMAN (Alcohol dehydrogenase 4 OS=Homo sapiens GN=ADH4 PE=1 SV=4)

HSP 1 Score: 93.5893 bits (231), Expect = 3.398e-19
Identity = 41/116 (35.34%), Postives = 68/116 (58.62%), Query Frame = 1
Query:    1 MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCII 348
            +T GGVD +++C G  + M +A +C   GWG    +GV +        P  ++  RT+ GTFFG +K    +P +V  Y NK+  L+  +TH +PF +I++AF+ M +G+ +R I+
Sbjct:  263 LTKGGVDFALDCAGGSETMKAALDCTTAGWGSCTFIGVAAGSKGLTVFPEELIIGRTINGTFFGGWKSVDSIPKLVTDYKNKKFNLDALVTHTLPFDKISEAFDLMNQGKSIRTIL 378          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: ADH1_PERMA (Alcohol dehydrogenase 1 OS=Peromyscus maniculatus GN=ADH1 PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 3.398e-19
Identity = 45/117 (38.46%), Postives = 70/117 (59.83%), Query Frame = 1
Query:    1 MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIIS 351
            MT+GGVD S E  G +D M S+    H   GV+V+VGVP         P+++L  R+ KG  FG +K +  +P +V  +M K+  LE  ITH +PF +IN+AF+ +  G+ +R +++
Sbjct:  258 MTDGGVDFSFEVIGRLDTMTSSLLSCHASCGVSVIVGVPPNAQSLSVNPMSLLMGRSWKGAIFGGFKSKDSVPKLVTDFMAKKFPLEPLITHVLPFEKINEAFDLLRAGKSIRTVLT 374          
The following BLAST results are available for this feature:
BLAST of CX289113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
FRMA_ECO246.847e-2038.39S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
ADHL1_ARATH6.847e-2040.34Alcohol dehydrogenase-like 1 OS=Arabidopsis thalia... [more]
ADH1_GEOKN6.847e-2039.32Alcohol dehydrogenase 1 OS=Geomys knoxjonesi GN=AD... [more]
ADH1_GEOBU6.847e-2039.32Alcohol dehydrogenase 1 OS=Geomys bursarius GN=ADH... [more]
ADH1_RAT8.942e-2040.17Alcohol dehydrogenase 1 OS=Rattus norvegicus GN=Ad... [more]
FRMA_ECOLI1.525e-1938.39S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
ADH1B_PAPHA1.525e-1936.75Alcohol dehydrogenase 1B OS=Papio hamadryas GN=ADH... [more]
ADHL7_ARATH2.602e-1935.29Alcohol dehydrogenase-like 7 OS=Arabidopsis thalia... [more]
ADH4_HUMAN3.398e-1935.34Alcohol dehydrogenase 4 OS=Homo sapiens GN=ADH4 PE... [more]
ADH1_PERMA3.398e-1938.46Alcohol dehydrogenase 1 OS=Peromyscus maniculatus ... [more]

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Properties
Property NameValue
Genbank descriptionC02009C07SK IF1 Citrus clementina cDNA clone C02009C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289113 ID=CX289113; Name=CX289113; organism=Citrus clementina; type=EST; length=403bp
ATGACGAACGGTGGAGTTGACAGAAGTGTGGAGTGCACCGGCAACATTGA
TAACATGATCTCAGCCTTCGAGTGTGTTCATGATGGATGGGGTGTAGCTG
TGCTCGTTGGAGTGCCCAGTAAGGATGCAGTGTTCATGACCAAGCCAATC
AATGTACTTAACGAAAGAACCCTCAAAGGAACTTTCTTCGGGAACTACAA
ACCGCGGACTGATCTGCCCTCTGTCGTTGATATGTACATGAACAAGCAAC
TGGAACTAGAGAAGTTTATAACCCATCGCATCCCTTTCTCGGAAATCAAT
AAAGCCTTCGAGTACATGGTGAAAGGGGAGGGTTTGAGGTGCATTATCAG
CATGGAAGACTAGGAGTGAAAAAGGGAAAGAATAATCAAGTAAATAACAA
TAG
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