CX289113

Overview
NameCX289113
Unique NameCX289113
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length403
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: ADH1B_PANTR (Alcohol dehydrogenase 1B OS=Pan troglodytes GN=ADH1B PE=2 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 3.398e-19
Identity = 42/117 (35.90%), Postives = 70/117 (59.83%), Query Frame = 1
Query:    1 MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIIS 351
            MT+GGVD S E  G +D M+++  C H+  G +V+VGVP         P+ +L  RT KG  +G +K +  +P +V  +M K+  L+  ITH +PF +IN+ F+ +  G+ +R +++
Sbjct:  258 MTDGGVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPPASQNLSINPMLLLTGRTWKGAVYGGFKSKEGIPKLVADFMAKKFSLDALITHVLPFEKINEGFDLLHSGKSIRTVLT 374          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: ADH1B_HUMAN (Alcohol dehydrogenase 1B OS=Homo sapiens GN=ADH1B PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 3.398e-19
Identity = 42/117 (35.90%), Postives = 70/117 (59.83%), Query Frame = 1
Query:    1 MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIIS 351
            MT+GGVD S E  G +D M+++  C H+  G +V+VGVP         P+ +L  RT KG  +G +K +  +P +V  +M K+  L+  ITH +PF +IN+ F+ +  G+ +R +++
Sbjct:  258 MTDGGVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPPASQNLSINPMLLLTGRTWKGAVYGGFKSKEGIPKLVADFMAKKFSLDALITHVLPFEKINEGFDLLHSGKSIRTVLT 374          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: ADH1G_PAPHA (Alcohol dehydrogenase 1C OS=Papio hamadryas GN=ADH1C PE=2 SV=3)

HSP 1 Score: 92.4337 bits (228), Expect = 7.570e-19
Identity = 42/116 (36.21%), Postives = 69/116 (59.48%), Query Frame = 1
Query:    1 MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCII 348
            MT+GGVD S E  G +D ++++  C H+  G +V+VGVP         P+ +L  RT KG  FG +K +  +P +V  +M K+  L+  IT+ +PF +IN+ F+ +  G+ +R I+
Sbjct:  258 MTDGGVDFSFEVIGRLDTIMASLLCCHEACGTSVIVGVPPDSQNLSINPVLLLTGRTWKGAIFGGFKSKESVPKLVSDFMAKKFSLDALITNVLPFEKINEGFDLLRSGKSIRTIL 373          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: ADH1G_HUMAN (Alcohol dehydrogenase 1C OS=Homo sapiens GN=ADH1C PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 7.570e-19
Identity = 42/117 (35.90%), Postives = 70/117 (59.83%), Query Frame = 1
Query:    1 MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIIS 351
            MT+GGVD S E  G +D M+++  C H+  G +V+VGVP         P+ +L  RT KG  FG +K +  +P +V  +M K+  L+  IT+ +PF +IN+ F+ +  G+ +R +++
Sbjct:  258 MTDGGVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPPDSQNLSINPMLLLTGRTWKGAIFGGFKSKESVPKLVADFMAKKFSLDALITNILPFEKINEGFDLLRSGKSIRTVLT 374          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: ADH1_MOUSE (Alcohol dehydrogenase 1 OS=Mus musculus GN=Adh1 PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 9.887e-19
Identity = 46/117 (39.32%), Postives = 69/117 (58.97%), Query Frame = 1
Query:    1 MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIIS 351
            MT+GGVD S E  G +D M SA    H   GV+V+VGVP         P+ +L  RT KG  FG +K +  +P +V  +M K+  L+  ITH +PF +IN+AF+ +  G+ +R +++
Sbjct:  258 MTDGGVDFSFEVIGRLDTMTSALLSCHAACGVSVVVGVPPNAQNLSMNPMLLLLGRTWKGAIFGGFKSKDSVPKLVADFMAKKFPLDPLITHVLPFEKINEAFDLLRSGKSIRTVLT 374          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: ADH1A_HUMAN (Alcohol dehydrogenase 1A OS=Homo sapiens GN=ADH1A PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 1.291e-18
Identity = 43/116 (37.07%), Postives = 68/116 (58.62%), Query Frame = 1
Query:    1 MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCII 348
            MT+GGVD S E  G +D M+++  C H+  G +V+VGVP         P+ +L  RT KG   G +K +  +P +V  +M K+  L+  ITH +PF +IN+ F+ +  G+ +R I+
Sbjct:  258 MTDGGVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPPDSQNLSMNPMLLLTGRTWKGAILGGFKSKECVPKLVADFMAKKFSLDALITHVLPFEKINEGFDLLHSGKSIRTIL 373          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: ADH1_RANPE (Alcohol dehydrogenase 1 OS=Rana perezi PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.686e-18
Identity = 45/117 (38.46%), Postives = 67/117 (57.26%), Query Frame = 1
Query:    1 MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIIS 351
            MT+ GVD + E  GN   M SA    H G G  V+VG+    AV    P+ +L  R L G  FG +K + D+P +V  Y+NK+ + +  ITH +PF +IN+ FE +  G+ +R I++
Sbjct:  258 MTDDGVDYAFEVIGNTTVMTSALSSSHFGCGKTVIVGLAPSSAVMSFDPLLILTGRILTGAVFGGWKSKDDVPKLVRDYLNKKFDFDPLITHYMPFEKINEGFELLRNGKSIRTILT 374          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: ADH1_ANAPL (Alcohol dehydrogenase 1 (Fragment) OS=Anas platyrhynchos GN=ADH1 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.686e-18
Identity = 44/117 (37.61%), Postives = 70/117 (59.83%), Query Frame = 1
Query:    1 MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIIS 351
            MT  GVD S E  G I+ M++A    H  +GV+V+VGVP         P+ + + RT KG+ FG +K +  +P +V  YM K+  L+  ITH +PFS+IN+ F+ +  G+ +R +++
Sbjct:   68 MTGYGVDYSFEVIGRIETMVAALASCHYNYGVSVIVGVPPAAQNITFDPMLLFSGRTWKGSVFGGWKSKDSVPKLVADYMKKKFVLDPLITHTLPFSKINEGFDLLRAGKSIRSVLT 184          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: ADHL4_ARATH (Alcohol dehydrogenase-like 4 OS=Arabidopsis thaliana GN=At1g64710 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.203e-18
Identity = 40/118 (33.90%), Postives = 72/118 (61.02%), Query Frame = 1
Query:    1 MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISM 354
            +T GGV+ S EC G+I+ +  AF   + G GV V++GV +   +    P+ +   R++  + FG +KP+T LP  +   +   L L+ FI+H++PF +IN+A + + +G+ LRC++ +
Sbjct:  263 ITEGGVEYSFECAGSIEALREAFLSTNSGVGVTVMLGVHASPQLLPIHPMELFQGRSITASVFGGFKPKTQLPFFITQCLQGLLNLDLFISHQLPFHDINEAMQLLHQGKALRCLLHL 380          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: ADHP_RABIT (Alcohol dehydrogenase class-2 isozyme 1 OS=Oryctolagus cuniculus GN=ADH2-1 PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 2.877e-18
Identity = 43/116 (37.07%), Postives = 67/116 (57.76%), Query Frame = 1
Query:    1 MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCII 348
            MTNGGVD +++C G  + M +  +C   GWG    VGV   D      PI ++  RTLKGT FG +   T +P +V  Y N + +L+  +TH +PF +IN+A   + +G+ +R ++
Sbjct:  263 MTNGGVDFAIDCAGGSEVMKATVDCATVGWGSCTFVGVNLADKGLTISPIELILGRTLKGTNFGGWDAET-VPKLVSDYKNGKFDLDALVTHTLPFDKINEALNLLDQGKSIRTVL 377          
The following BLAST results are available for this feature:
BLAST of CX289113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
ADH1B_PANTR3.398e-1935.90Alcohol dehydrogenase 1B OS=Pan troglodytes GN=ADH... [more]
ADH1B_HUMAN3.398e-1935.90Alcohol dehydrogenase 1B OS=Homo sapiens GN=ADH1B ... [more]
ADH1G_PAPHA7.570e-1936.21Alcohol dehydrogenase 1C OS=Papio hamadryas GN=ADH... [more]
ADH1G_HUMAN7.570e-1935.90Alcohol dehydrogenase 1C OS=Homo sapiens GN=ADH1C ... [more]
ADH1_MOUSE9.887e-1939.32Alcohol dehydrogenase 1 OS=Mus musculus GN=Adh1 PE... [more]
ADH1A_HUMAN1.291e-1837.07Alcohol dehydrogenase 1A OS=Homo sapiens GN=ADH1A ... [more]
ADH1_RANPE1.686e-1838.46Alcohol dehydrogenase 1 OS=Rana perezi PE=1 SV=1[more]
ADH1_ANAPL1.686e-1837.61Alcohol dehydrogenase 1 (Fragment) OS=Anas platyrh... [more]
ADHL4_ARATH2.203e-1833.90Alcohol dehydrogenase-like 4 OS=Arabidopsis thalia... [more]
ADHP_RABIT2.877e-1837.07Alcohol dehydrogenase class-2 isozyme 1 OS=Oryctol... [more]

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Properties
Property NameValue
Genbank descriptionC02009C07SK IF1 Citrus clementina cDNA clone C02009C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289113 ID=CX289113; Name=CX289113; organism=Citrus clementina; type=EST; length=403bp
ATGACGAACGGTGGAGTTGACAGAAGTGTGGAGTGCACCGGCAACATTGA
TAACATGATCTCAGCCTTCGAGTGTGTTCATGATGGATGGGGTGTAGCTG
TGCTCGTTGGAGTGCCCAGTAAGGATGCAGTGTTCATGACCAAGCCAATC
AATGTACTTAACGAAAGAACCCTCAAAGGAACTTTCTTCGGGAACTACAA
ACCGCGGACTGATCTGCCCTCTGTCGTTGATATGTACATGAACAAGCAAC
TGGAACTAGAGAAGTTTATAACCCATCGCATCCCTTTCTCGGAAATCAAT
AAAGCCTTCGAGTACATGGTGAAAGGGGAGGGTTTGAGGTGCATTATCAG
CATGGAAGACTAGGAGTGAAAAAGGGAAAGAATAATCAAGTAAATAACAA
TAG
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