CX289113

Overview
NameCX289113
Unique NameCX289113
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length403
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: ADH1_CHICK (Alcohol dehydrogenase 1 OS=Gallus gallus GN=ADH1 PE=1 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 2.877e-18
Identity = 43/116 (37.07%), Postives = 69/116 (59.48%), Query Frame = 1
Query:    1 MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCII 348
            MT  GVD S E  G I+ M +A    H+ +GV+V+VGVP         P+ + + RT KG+ FG +K +  +P +V  YM K+  L+  ITH +PF++IN+ F+ +  G+ +R ++
Sbjct:  259 MTGQGVDYSFEVIGRIETMTAALASCHNNYGVSVIVGVPPAAQKISFDPMLIFSGRTWKGSVFGGWKSKDAVPKLVADYMKKKFVLDPLITHTLPFTKINEGFDLLRTGKSIRSVL 374          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: ADH1A_PONAB (Alcohol dehydrogenase 1A OS=Pongo abelii GN=ADH1A PE=2 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 2.877e-18
Identity = 43/116 (37.07%), Postives = 67/116 (57.76%), Query Frame = 1
Query:    1 MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCII 348
            MT+GGVD S E  G +D M+++  C H+  G +V+VGVP         P+ +L  RT KG   G +K +  +P +V  +M K+  L+  ITH +PF +IN  F+ +  G+ +R I+
Sbjct:  258 MTDGGVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPPDSQNLSMNPMLLLTGRTWKGAVLGGFKSKECVPKLVADFMAKKFSLDALITHVLPFEKINDGFDLLHSGKSIRTIL 373          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: ADH1_GEOAT (Alcohol dehydrogenase 1 OS=Geomys attwateri GN=ADH1 PE=2 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 4.907e-18
Identity = 44/117 (37.61%), Postives = 69/117 (58.97%), Query Frame = 1
Query:    1 MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIIS 351
            MT+GGVD S E  G +D  +SA  C  +  GV+V+VGVP         P  +L+ R+ KG  FG YK + D+P +V  +M K+  LE  IT+  P ++IN+ F+ +  G+ +R +++
Sbjct:  258 MTDGGVDFSFEVIGRLDTKVSALMCCQESHGVSVIVGVPPNAQSLTIDPKVLLSGRSWKGAVFGGYKGKDDVPKLVADFMAKKFPLEPLITNVFPLAKINEGFDLLRAGKSIRTVLT 374          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: ADHQ_RABIT (Alcohol dehydrogenase class-2 isozyme 2 OS=Oryctolagus cuniculus GN=ADH2-2 PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 8.370e-18
Identity = 42/116 (36.21%), Postives = 67/116 (57.76%), Query Frame = 1
Query:    1 MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCII 348
            MTNGGVD +++C G  + M +  +C   GWG    VGV   D      P+ ++  RTL+G+ FG +   T +P +V  Y N +  LE  +TH +PF +IN+A + + +G+ +R I+
Sbjct:  263 MTNGGVDFAIDCAGGSEVMKATVDCTTVGWGSCTFVGVNVNDKGLTISPVELILGRTLRGSSFGGWDVDT-VPKLVSDYKNGKFNLEALVTHTLPFEKINEALDLLKQGKSIRTIL 377          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: ADH4_RAT (Alcohol dehydrogenase 4 OS=Rattus norvegicus GN=Adh4 PE=2 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 8.370e-18
Identity = 41/117 (35.04%), Postives = 71/117 (60.68%), Query Frame = 1
Query:    1 MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIIS 351
            +T GGVD S++C G    + +A +C   GWG   +VG    +    T  ++++  R++KGTFFG +K    +P++V  Y NK+ +L+  +TH +PF +IN A + M +G+ +R I++
Sbjct:  262 LTGGGVDFSLDCAGTAQTLKAAVDCTVVGWGSCTVVGAKVDEMNIST--VDMILGRSVKGTFFGGWKSVDSVPNLVTDYKNKKFDLDLLVTHALPFDKINDAIDLMNQGKSIRTILT 376          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: ADH4_MOUSE (Alcohol dehydrogenase 4 OS=Mus musculus GN=Adh4 PE=1 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 8.370e-18
Identity = 41/117 (35.04%), Postives = 69/117 (58.97%), Query Frame = 1
Query:    1 MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIIS 351
            +T GGVD S++C G    + +A +C   GWG   +VG    +    T  ++V+  R++ GTFFG +K    +P++V  Y NK+ +L+  +TH +PF  IN A + M +G+ +R I++
Sbjct:  262 LTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKVDEMTIPT--VDVILGRSINGTFFGGWKSVDSVPNLVSDYKNKKFDLDLLVTHALPFESINDAIDLMKEGKSIRTILT 376          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: ADH1_NAJNA (Alcohol dehydrogenase 1 OS=Naja naja PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.370e-18
Identity = 43/117 (36.75%), Postives = 67/117 (57.26%), Query Frame = 1
Query:    1 MTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCII 348
            +T G GVD S E  G  + MISAF   H   G +V+VGVP   ++    P+ +   RT KG  FG +K +  +P +V  +M K+  L+  ITH +PF +IN+ F+ +  G+ +R ++
Sbjct:  257 LTGGEGVDYSFEVIGRTETMISAFTSCHQNLGTSVVVGVPPNASMITYNPLMLFTGRTWKGCVFGGWKSKDSVPKLVSDFMQKKFVLDPLITHTLPFEKINEGFDLLRSGKSIRTVL 373          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: ADH1_COTJA (Alcohol dehydrogenase 1 OS=Coturnix coturnix japonica GN=ADH1 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.093e-17
Identity = 43/116 (37.07%), Postives = 67/116 (57.76%), Query Frame = 1
Query:    1 MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCII 348
            MT  GVD S E  G I+ M  A    H  +GV+V+VGVP         P+ + + RT KG+ FG +K +  +P +V  YM K+  L+  ITH +PF++IN+ F+ +  G+ +R ++
Sbjct:  258 MTGKGVDYSFEVIGRIETMTEALASCHYNYGVSVIVGVPPAAQKISFDPMLIFSGRTWKGSVFGGWKSKDAVPKLVADYMKKKFVLDPLITHTLPFTKINEGFDLLRTGKSIRTVL 373          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: ADH8_RANPE (NADP-dependent alcohol dehydrogenase OS=Rana perezi GN=ADH8 PE=1 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 1.428e-17
Identity = 43/115 (37.39%), Postives = 73/115 (63.48%), Query Frame = 1
Query:    4 TNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCII 348
            TNGGVD +VEC G I+ M++A +  + G GV V++G+ S +      P+ +L  R+LKG+ FG +K   ++  +VD YM K++ +   ++ ++   +INKAFE +  G+G+R I+
Sbjct:  258 TNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASPNERLPLDPLLLLTGRSLKGSVFGGFKGE-EVSRLVDDYMKKKINVNFLVSTKLTLDQINKAFELLSSGQGVRSIM 371          
BLAST of CX289113 vs. ExPASy Swiss-Prot
Match: ADH7_MOUSE (Alcohol dehydrogenase class 4 mu/sigma chain OS=Mus musculus GN=Adh7 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.181e-17
Identity = 38/117 (32.48%), Postives = 66/117 (56.41%), Query Frame = 1
Query:    1 MTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTFFGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIIS 351
            MT   V  + E  G ++ M+ A    H  +G +V+VG P    +    P+ +   RT KG  FG +K R D+P +V  ++ K+ +L++ ITH +PF+ IN+ FE +  G+ +R +++
Sbjct:  257 MTGNTVQYTFEVIGRLETMVDALSSCHMNYGTSVVVGAPPSAKMLTYDPMLLFTGRTWKGCVFGGWKSRDDVPKLVTEFLEKKFDLDQLITHTLPFNNINEGFELLYSGKSIRTVLT 373          
The following BLAST results are available for this feature:
BLAST of CX289113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
ADH1_CHICK2.877e-1837.07Alcohol dehydrogenase 1 OS=Gallus gallus GN=ADH1 P... [more]
ADH1A_PONAB2.877e-1837.07Alcohol dehydrogenase 1A OS=Pongo abelii GN=ADH1A ... [more]
ADH1_GEOAT4.907e-1837.61Alcohol dehydrogenase 1 OS=Geomys attwateri GN=ADH... [more]
ADHQ_RABIT8.370e-1836.21Alcohol dehydrogenase class-2 isozyme 2 OS=Oryctol... [more]
ADH4_RAT8.370e-1835.04Alcohol dehydrogenase 4 OS=Rattus norvegicus GN=Ad... [more]
ADH4_MOUSE8.370e-1835.04Alcohol dehydrogenase 4 OS=Mus musculus GN=Adh4 PE... [more]
ADH1_NAJNA8.370e-1836.75Alcohol dehydrogenase 1 OS=Naja naja PE=1 SV=1[more]
ADH1_COTJA1.093e-1737.07Alcohol dehydrogenase 1 OS=Coturnix coturnix japon... [more]
ADH8_RANPE1.428e-1737.39NADP-dependent alcohol dehydrogenase OS=Rana perez... [more]
ADH7_MOUSE3.181e-1732.48Alcohol dehydrogenase class 4 mu/sigma chain OS=Mu... [more]

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Properties
Property NameValue
Genbank descriptionC02009C07SK IF1 Citrus clementina cDNA clone C02009C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289113 ID=CX289113; Name=CX289113; organism=Citrus clementina; type=EST; length=403bp
ATGACGAACGGTGGAGTTGACAGAAGTGTGGAGTGCACCGGCAACATTGA
TAACATGATCTCAGCCTTCGAGTGTGTTCATGATGGATGGGGTGTAGCTG
TGCTCGTTGGAGTGCCCAGTAAGGATGCAGTGTTCATGACCAAGCCAATC
AATGTACTTAACGAAAGAACCCTCAAAGGAACTTTCTTCGGGAACTACAA
ACCGCGGACTGATCTGCCCTCTGTCGTTGATATGTACATGAACAAGCAAC
TGGAACTAGAGAAGTTTATAACCCATCGCATCCCTTTCTCGGAAATCAAT
AAAGCCTTCGAGTACATGGTGAAAGGGGAGGGTTTGAGGTGCATTATCAG
CATGGAAGACTAGGAGTGAAAAAGGGAAAGAATAATCAAGTAAATAACAA
TAG
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