CX289154

Overview
NameCX289154
Unique NameCX289154
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length540
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289154 vs. ExPASy Swiss-Prot
Match: DDC_CAEEL (Probable aromatic-L-amino-acid decarboxylase OS=Caenorhabditis elegans GN=hdl-1 PE=2 SV=3)

HSP 1 Score: 130.183 bits (326), Expect = 6.178e-30
Identity = 69/179 (38.55%), Postives = 105/179 (58.66%), Query Frame = 2
Query:    5 DSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALV-SSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGDKR 538
            D+L A I +D+E GLIP F+ A  GT+   + D L  L  V ++ G W+HVDAAYAG+A ICPE R  + G++ ADSF     K   A  D CCLWV+D   L  +SL  +P+            + +K   +  S+R  +LK+WF+IR++GV NL++ +R H+ + ++  +++  D R
Sbjct:  565 DTLHAAIMADIERGLIPFFVGANFGTSGPCSFDHLHELGPVCREHGTWLHVDAAYAGTALICPEIRGLMRGIDWADSFCTTPSKLIIAVCDVCCLWVRDRHKLQHASLENHPD------------LPFKG--LPTSQRVGALKIWFMIRSFGVENLQNQIREHIRLGQVMTKILQKDLR 729          
BLAST of CX289154 vs. ExPASy Swiss-Prot
Match: DDC_HAEIN (L-2,4-diaminobutyrate decarboxylase OS=Haemophilus influenzae GN=ddc PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.525e-20
Identity = 55/171 (32.16%), Postives = 92/171 (53.80%), Query Frame = 2
Query:   14 MAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVS 526
            +AQ+ +D   G I   + AT GTT   A+D LK +  +A ++  W+HVDAA+ G+  +  ++R+F+DG+E  DS +L+ HK FF T+ C    +KDP      +    +YL ++  E+  V +     +  +RRF +LKLWF +   G       +   V + K  E+ ++
Sbjct:  243 LAQLKAD---GKITACIVATAGTTDAGAIDDLKAIRKLADEYQAWLHVDAAWGGALLLSKDYRYFLDGIELTDSITLDFHKHFFQTISCGAFLLKDPEN-YRFIDYKADYLNSEYDEAHGVPNLVAKSLQTTRRFDALKLWFTLEALGEDLYASMIDHGVKLTKEVEQYIN 409          
BLAST of CX289154 vs. ExPASy Swiss-Prot
Match: GADL1_BOVIN (Glutamate decarboxylase-like protein 1 OS=Bos taurus GN=GADL1 PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 2.602e-20
Identity = 53/157 (33.76%), Postives = 77/157 (49.04%), Query Frame = 2
Query:    2 PDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVS-SLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANL 469
            P+ L  ++    + G  P  +CAT GTT + A DPL  + D+ ++ G+W+HVDA++ GSA +  + R  + G+  ADS + N HK   A + CC   VKD   L+    S N  YL  +        D  D  I  SRR  + K W   +  G   L
Sbjct:  249 PEELEKRVQEAKKEGAAPFLVCATSGTTVLGAFDPLDEIADICERHGLWLHVDASWGGSALMSRKHRRLLQGIHRADSVAWNPHKMLMAGIQCCAFLVKDKSDLLKRCYSANASYLFQQDKFYDVSYDTGDKSIQCSRRPDAFKFWLAWKALGTLGL 405          
BLAST of CX289154 vs. ExPASy Swiss-Prot
Match: CSAD_HUMAN (Cysteine sulfinic acid decarboxylase OS=Homo sapiens GN=CSAD PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 9.886e-20
Identity = 53/153 (34.64%), Postives = 78/153 (50.98%), Query Frame = 2
Query:    2 PDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSL-STNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYG 457
            P+ L  QI      G +P  + AT GTT + A DPL+ + DV ++ G+W+HVDAA+ GS  +    RH +DG++ ADS + N HK   A L C  L ++D   L+     +   YL  +       +D  D  +   RR   LKLW + +  G
Sbjct:  221 PEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQG 373          
BLAST of CX289154 vs. ExPASy Swiss-Prot
Match: GADL1_MOUSE (Glutamate decarboxylase-like protein 1 OS=Mus musculus GN=Gadl1 PE=2 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 1.686e-19
Identity = 54/157 (34.39%), Postives = 78/157 (49.68%), Query Frame = 2
Query:    2 PDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSS-LSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANL 469
            P+ L  QI    + G +P  +CAT GTT + A DPL  + +V ++ G+W+HVDA++ GSA +  + R  + G+  ADS + N HK   A + C  L VKD   L+    S    YL  +        D  D  I  SRR  + K W   +  G + L
Sbjct:  278 PEDLEKQIWQARQEGAVPFLVCATSGTTVLGAFDPLDEIAEVCERHGLWLHVDASWGGSALVSRKHRRLLHGIHRADSVAWNPHKMLMAGIQCSALLVKDKSDLLKKCYSAKATYLFQQDKFYDVSYDTGDKSIQCSRRPDAFKFWMTWKALGTSGL 434          
BLAST of CX289154 vs. ExPASy Swiss-Prot
Match: CSAD_RAT (Cysteine sulfinic acid decarboxylase OS=Rattus norvegicus GN=Csad PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.686e-19
Identity = 53/153 (34.64%), Postives = 78/153 (50.98%), Query Frame = 2
Query:    2 PDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSL-STNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYG 457
            P+ L  QI+     G +P  + AT GTT + A DPL  + DV ++ G+W+HVDAA+ GS  +    RH +DG++ ADS + N HK   A L C  L ++D   L+     +   YL  +       +D  D  +   RR   LKLW + +  G
Sbjct:  221 PEDLERQISLAEAEGSVPFLVSATSGTTVLGAFDPLDAIADVCQRHGLWLHVDAAWGGSVLLSRTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLRDTSNLLKRCHGSQASYLFQQDKFYNVALDTGDKVVQCGRRVDCLKLWLMWKAQG 373          
BLAST of CX289154 vs. ExPASy Swiss-Prot
Match: GADL1_HUMAN (Glutamate decarboxylase-like protein 1 OS=Homo sapiens GN=GADL1 PE=2 SV=4)

HSP 1 Score: 94.3597 bits (233), Expect = 3.757e-19
Identity = 53/157 (33.76%), Postives = 76/157 (48.41%), Query Frame = 2
Query:    2 PDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSS-LSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANL 469
            P+ L  Q+    + G  P  +CAT GTT + A DPL  + D+ ++  +W+HVDA++ GSA +  + R  + G+  ADS + N HK   A + CC L VKD   L+    S    YL  +        D  D  I  SRR  + K W   +  G   L
Sbjct:  249 PEELEKQVWQARKEGAAPFLVCATSGTTVLGAFDPLDEIADICERHSLWLHVDASWGGSALMSRKHRKLLHGIHRADSVAWNPHKMLMAGIQCCALLVKDKSDLLKKCYSAKASYLFQQDKFYDVSYDTGDKSIQCSRRPDAFKFWMTWKALGTLGL 405          
BLAST of CX289154 vs. ExPASy Swiss-Prot
Match: CSAD_MOUSE (Cysteine sulfinic acid decarboxylase OS=Mus musculus GN=Csad PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.093e-18
Identity = 53/153 (34.64%), Postives = 76/153 (49.67%), Query Frame = 2
Query:    2 PDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSL-STNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYG 457
            P+ L  QI      G +P  + AT GTT + A DPL  + DV ++ G+W HVDAA+ GS  +    RH +DG++ ADS + N HK   A L C  L ++D   L+     +   YL  +       +D  D  +   RR   LKLW + +  G
Sbjct:  221 PEDLERQIILAEAEGSVPFLVSATSGTTVLGAFDPLDAIADVCQRHGLWFHVDAAWGGSVLLSRTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLRDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQG 373          
BLAST of CX289154 vs. ExPASy Swiss-Prot
Match: GADL1_XENTR (Glutamate decarboxylase-like protein 1 (Fragment) OS=Xenopus tropicalis GN=gadl1 PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 3.180e-18
Identity = 54/178 (30.34%), Postives = 84/178 (47.19%), Query Frame = 2
Query:    2 PDSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSL-STNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYGVANLRHFLRSHVNMAKLFERLVSGD 532
            P+ L  QI    + G +P  + AT GTT + A DPL  + ++ ++  +W HVDA++ GSA +  ++R  + G+  ADS + N HK   A + CC L V+D   L+    S    YL  +        D  D  I  SRR  + K W + +  G       L   +N A    R ++ +
Sbjct:  239 PEELENQIQRAKKEGAVPFLVSATSGTTVLGAFDPLDDIANICEKHKLWFHVDASWGGSALMSQKYRKRLHGIHRADSVAWNPHKMLMAGIQCCALLVRDNSGLLKRCHSAEATYLFQQDKFYDVQYDTGDKSIQCSRRADAFKFWMMWKALGTTG----LEERINRALALTRYLASE 412          
BLAST of CX289154 vs. ExPASy Swiss-Prot
Match: DDC_ACIBA (L-2,4-diaminobutyrate decarboxylase OS=Acinetobacter baumannii GN=ddc PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.061e-17
Identity = 47/151 (31.13%), Postives = 81/151 (53.64%), Query Frame = 2
Query:    5 DSLMAQINSDVEVGLIPLFLCATIGTTAITAVDPLKPLCDVAKQFGIWVHVDAAYAGSACICPEFRHFIDGVEGADSFSLNAHKWFFATLDCCCLWVKDPRALVSSLSTNPEYLKNKATESMQVVDYKDWQITLSRRFRSLKLWFVIRNYG 457
            +  MA + ++   G +   + AT GTT   A+ PLK + ++  ++G W+H+DAA+ G+  +   +R  +DG+E +DS +L+ HK +F ++ C    +KD  A    +    EYL +   E   V +     +  +RRF +LKLW  I + G
Sbjct:  239 EKTMAHLQAE---GKVVACVVATAGTTDAGAIHPLKKIREITNKYGSWMHIDAAWGGALILSNTYRAMLDGIELSDSITLDFHKHYFQSISCGAFLLKD-EANYRFMHYEAEYLNSAYDEEHGVPNLVSKSLQTTRRFDALKLWMTIESLG 385          
The following BLAST results are available for this feature:
BLAST of CX289154 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
DDC_CAEEL6.178e-3038.55Probable aromatic-L-amino-acid decarboxylase OS=Ca... [more]
DDC_HAEIN1.525e-2032.16L-2,4-diaminobutyrate decarboxylase OS=Haemophilus... [more]
GADL1_BOVIN2.602e-2033.76Glutamate decarboxylase-like protein 1 OS=Bos taur... [more]
CSAD_HUMAN9.886e-2034.64Cysteine sulfinic acid decarboxylase OS=Homo sapie... [more]
GADL1_MOUSE1.686e-1934.39Glutamate decarboxylase-like protein 1 OS=Mus musc... [more]
CSAD_RAT1.686e-1934.64Cysteine sulfinic acid decarboxylase OS=Rattus nor... [more]
GADL1_HUMAN3.757e-1933.76Glutamate decarboxylase-like protein 1 OS=Homo sap... [more]
CSAD_MOUSE1.093e-1834.64Cysteine sulfinic acid decarboxylase OS=Mus muscul... [more]
GADL1_XENTR3.180e-1830.34Glutamate decarboxylase-like protein 1 (Fragment) ... [more]
DDC_ACIBA2.061e-1731.13L-2,4-diaminobutyrate decarboxylase OS=Acinetobact... [more]

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Properties
Property NameValue
Genbank descriptionC02009G09SK IF1 Citrus clementina cDNA clone C02009G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289154 ID=CX289154; Name=CX289154; organism=Citrus clementina; type=EST; length=540bp
GCCAGACTCACTGATGGCACAAATCAACTCGGATGTAGAAGTTGGACTGA
TCCCATTATTTCTATGTGCCACAATCGGGACGACTGCAATAACTGCTGTT
GATCCCTTAAAGCCACTTTGCGACGTAGCAAAACAATTCGGAATATGGGT
CCACGTTGATGCTGCATATGCTGGAAGTGCCTGCATTTGCCCGGAGTTTC
GACATTTTATTGACGGAGTTGAAGGTGCGGATTCGTTTAGTCTCAATGCA
CATAAATGGTTCTTTGCAACATTAGATTGTTGTTGCCTCTGGGTGAAGGA
TCCAAGAGCTCTTGTGAGCTCACTCTCAACAAATCCTGAGTACTTGAAGA
ACAAAGCCACCGAGTCGATGCAAGTGGTGGATTACAAAGATTGGCAAATA
ACTCTGAGTCGAAGATTTCGTTCGCTGAAACTATGGTTTGTGATAAGAAA
CTATGGCGTGGCAAATCTAAGGCACTTCCTTCGCAGCCATGTAAACATGG
CCAAGCTTTTTGAAAGGCTTGTAAGCGGTGATAAGAGGTT
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