CX289162

Overview
NameCX289162
Unique NameCX289162
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length579
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289162 vs. ExPASy Swiss-Prot
Match: CLPX_ALCBS (ATP-dependent Clp protease ATP-binding subunit clpX OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=clpX PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 2.563e-35
Identity = 76/168 (45.24%), Postives = 108/168 (64.29%), Query Frame = 2
Query:    2 FVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKEAVGSVDAP 505
            F GL+K I ER +   IGF A V++   T  L + LV       V+  DLV YGLIPEFIGR P++ +L  L+ED L+Q+LTEP+NAL +QY ++F M  V+L F +DAL+ IA KAM + TGARGLR++LE++L + M+++P  +    SV  V++D   +     P
Sbjct:  253 FAGLDKVIRERSEKGGIGFSAEVKSKDNTRNLGELLV------DVEPEDLVKYGLIPEFIGRLPVIATLEELSEDALIQILTEPRNALTKQYARLFEMEGVELDFREDALKAIANKAMVRKTGARGLRSILESVLLDTMYQVPSME----SVAKVVIDSPTIKGESEP 410          
BLAST of CX289162 vs. ExPASy Swiss-Prot
Match: CLPX_SHEON (ATP-dependent Clp protease ATP-binding subunit clpX OS=Shewanella oneidensis GN=clpX PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.347e-35
Identity = 81/169 (47.93%), Postives = 107/169 (63.31%), Query Frame = 2
Query:    2 FVGLEKTISERRQ-DSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKEAVGSVDAP 505
            F GLEK I +R    S IGFGA V+      G  D    S  L  V+ GDLV YGLIPEFIGR P++ +L+ L+E+ LVQ+L+EPKNAL +QY  +F M  V+L F +DAL+ IA KAM++ TGARGLR+++E IL + M++IP        V   +VD+  V    AP
Sbjct:  252 FAGLEKVIEQRAHVGSGIGFGAQVK------GEKDKATISETLSQVEPGDLVKYGLIPEFIGRLPVVATLTELDEEALVQILSEPKNALTKQYNALFEMEGVELEFREDALKAIAHKAMSRKTGARGLRSIVEGILLDTMYDIP----SIDGVVKAVVDESVVNGESAP 410          
BLAST of CX289162 vs. ExPASy Swiss-Prot
Match: CLPX_METPB (ATP-dependent Clp protease ATP-binding subunit clpX OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=clpX PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.347e-35
Identity = 80/178 (44.94%), Postives = 115/178 (64.61%), Query Frame = 2
Query:    2 FVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKEAVGSVDAPGCGAKILHGD 535
            F GLE+ IS+R + +SIGFGA V+A        D   T  +  SV+  DL+ +GLIPEF+GR P+L +L  L+E+ L ++L EPKNAL +QY+++F M NV+L F D+AL L+A+KA+ + TGARGLR++LE IL + M+++P    G  SV  V++  E V     P      +HGD
Sbjct:  250 FAGLERIISQRGKGTSIGFGASVQA-------PDDRRTGEVFRSVEPEDLLKFGLIPEFVGRLPVLATLEDLDEEALKKILQEPKNALVKQYQRLFEMENVELTFQDEALGLVARKAIERKTGARGLRSILETILLDTMYDLP----GLDSVEQVVIGPEVVDGKSKP----LFIHGD 412          
BLAST of CX289162 vs. ExPASy Swiss-Prot
Match: CLPX_ACICJ (ATP-dependent Clp protease ATP-binding subunit clpX OS=Acidiphilium cryptum (strain JF-5) GN=clpX PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.347e-35
Identity = 82/184 (44.57%), Postives = 117/184 (63.59%), Query Frame = 2
Query:    2 FVGLEKTISERRQDSSIGFGAPVR--ANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKEAVGSVDAPGCGAKILHGDGELE 547
            F GLEK I++R + S IGFGA VR     RTG         ++L  V+  DL+ +GLIPEFIGR P++ +L  L+E  L+++LT+PKNAL +QY ++F M  VKL+FT+DAL+++A +A+ + TGARGLR+++ENIL E MF++P    G  SV  V+++    G V         LHG    E
Sbjct:  249 FAGLEKIIAQRGKGSGIGFGADVRDPTEQRTG---------AILREVEPEDLLKFGLIPEFIGRLPVVATLEDLDEAALIEILTKPKNALVKQYGRLFEMEGVKLNFTEDALKVVAARAIQRKTGARGLRSIMENILLETMFDLP----GLDSVEEVVIN----GEVAEGRANPLFLHGKERAE 415          
BLAST of CX289162 vs. ExPASy Swiss-Prot
Match: CLPX_SILPO (ATP-dependent Clp protease ATP-binding subunit clpX OS=Silicibacter pomeroyi GN=clpX PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 4.371e-35
Identity = 76/168 (45.24%), Postives = 115/168 (68.45%), Query Frame = 2
Query:    2 FVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKEAVGSVDAP 505
            F GL+K I++R + S++GFGA VRA+   G          L   ++  DL+ +GLIPEF+GR P+L +L  L+ED LV +LT+PKNAL +QY+++F + + +L FTDDAL+ IAK+A+ + TGARGLR+++E+IL + MF++P       +V  V+V++EAV S   P
Sbjct:  253 FAGLDKIIAQRGKGSAMGFGADVRASDERG-------VGELFTELEPEDLLKFGLIPEFVGRLPVLATLEDLDEDALVTILTKPKNALVKQYQRLFELEDTELDFTDDALKAIAKRAIERKTGARGLRSIMEDILLDTMFDLP----SMDNVTKVVVNEEAVTSDAQP 409          
BLAST of CX289162 vs. ExPASy Swiss-Prot
Match: CLPX_SHESW (ATP-dependent Clp protease ATP-binding subunit clpX OS=Shewanella sp. (strain W3-18-1) GN=clpX PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 4.371e-35
Identity = 80/169 (47.34%), Postives = 108/169 (63.91%), Query Frame = 2
Query:    2 FVGLEKTISERRQ-DSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKEAVGSVDAP 505
            F GLEK I +R    S IGFGA V+      G  D    S  L  V+ GDLV YGLIPEFIGR P++ +L+ L+E+ LVQ+L++PKNAL +QY  +F M  V+L F +DAL+ IA KAM++ TGARGLR+++E+IL + M++IP        V   +VD+  V    AP
Sbjct:  252 FAGLEKVIEQRAHVGSGIGFGAQVK------GEKDKATISETLSQVEPGDLVKYGLIPEFIGRLPVVATLTELDEEALVQILSQPKNALTKQYSALFEMEGVELEFREDALKAIAHKAMSRKTGARGLRSIVESILLDTMYDIP----SVDGVVKAVVDESVVNGESAP 410          
BLAST of CX289162 vs. ExPASy Swiss-Prot
Match: CLPX_SHEPC (ATP-dependent Clp protease ATP-binding subunit clpX OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=clpX PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 4.371e-35
Identity = 80/169 (47.34%), Postives = 108/169 (63.91%), Query Frame = 2
Query:    2 FVGLEKTISERRQ-DSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKEAVGSVDAP 505
            F GLEK I +R    S IGFGA V+      G  D    S  L  V+ GDLV YGLIPEFIGR P++ +L+ L+E+ LVQ+L++PKNAL +QY  +F M  V+L F +DAL+ IA KAM++ TGARGLR+++E+IL + M++IP        V   +VD+  V    AP
Sbjct:  252 FAGLEKVIEQRAHVGSGIGFGAQVK------GEKDKATISETLSQVEPGDLVKYGLIPEFIGRLPVVATLTELDEEALVQILSQPKNALTKQYSALFEMEGVELEFREDALKAIAHKAMSRKTGARGLRSIVESILLDTMYDIP----SVDGVVKAVVDESVVNGESAP 410          
BLAST of CX289162 vs. ExPASy Swiss-Prot
Match: CLPX_MAGSA (ATP-dependent Clp protease ATP-binding subunit clpX OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=clpX PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 4.371e-35
Identity = 75/162 (46.30%), Postives = 111/162 (68.52%), Query Frame = 2
Query:    2 FVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKEAV 487
            F GLEK I  R + +SIGFGA VR         D   T  +L  V+  DL+ +GLIPEF+GR P+L +L  L+ D L+ +L++PKNAL +QY+++F M + +L F+DDAL+ IA+KA+A+ TGARGLR+++E IL + MF++P    G  +V+ V+++KE V
Sbjct:  250 FAGLEKIIGSRGRGTSIGFGADVRG-------PDERRTGEILREVEPEDLLKFGLIPEFVGRLPVLATLEDLDVDALIDILSKPKNALVKQYQRLFEMEDTRLAFSDDALKAIAEKAIARKTGARGLRSIMETILLDTMFDLP----GLDAVDEVVINKEVV 400          
BLAST of CX289162 vs. ExPASy Swiss-Prot
Match: CLPX_CLOTE (ATP-dependent Clp protease ATP-binding subunit clpX OS=Clostridium tetani GN=clpX PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 4.371e-35
Identity = 75/164 (45.73%), Postives = 115/164 (70.12%), Query Frame = 2
Query:    2 FVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKEAVGS 493
            F G++K I  R ++SS+GFGA +++               LL+ +   DL+ +GLIPEFIGR PI V+LSAL+ D LV++LTEPKNAL +QYKK+F M+NV L F ++AL+ IA++A+ ++TGARGLR+++E I+ + MFEIP  +    S++ V++++E V +
Sbjct:  249 FDGVDKLIERRTRNSSLGFGADIKSKRDEN-------VGELLKKIMPEDLLKFGLIPEFIGRLPITVTLSALDRDALVEILTEPKNALVKQYKKLFEMDNVHLEFKEEALKAIAEEAIRRSTGARGLRSIIEEIMKDIMFEIPSDE----SISKVIINEETVSN 401          
BLAST of CX289162 vs. ExPASy Swiss-Prot
Match: CLPX_YERPY (ATP-dependent Clp protease ATP-binding subunit clpX OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=clpX PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 5.709e-35
Identity = 78/169 (46.15%), Postives = 109/169 (64.50%), Query Frame = 2
Query:    2 FVGLEKTISER-RQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKEAVGSVDAP 505
            F GL+K I +R    S IGFGA V+      G ++      LL  V+  DL+ +GLIPEFIGR P++ +LS L+ED L+Q+L EPKNAL +QY+ +FS+  V+L F D+AL  IAKKAMA+ TGARGLR+++E  L + M+++P       SV  V+VD+  +    AP
Sbjct:  251 FAGLDKVIGQRINTGSGIGFGAVVK------GQSEKATEGELLSQVEPEDLIKFGLIPEFIGRLPVVATLSELSEDALIQILKEPKNALTKQYQALFSLEGVELEFRDEALTAIAKKAMARKTGARGLRSIVEGALLDTMYDLP----SMDSVEKVVVDESVIAGQSAP 409          
The following BLAST results are available for this feature:
BLAST of CX289162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPX_ALCBS2.563e-3545.24ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_SHEON3.347e-3547.93ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_METPB3.347e-3544.94ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_ACICJ3.347e-3544.57ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_SILPO4.371e-3545.24ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_SHESW4.371e-3547.34ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_SHEPC4.371e-3547.34ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_MAGSA4.371e-3546.30ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_CLOTE4.371e-3545.73ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_YERPY5.709e-3546.15ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionC02009H05SK IF1 Citrus clementina cDNA clone C02009H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289162 ID=CX289162; Name=CX289162; organism=Citrus clementina; type=EST; length=579bp
CTTTGTTGGTTTGGAGAAGACAATTTCAGAGAGACGGCAAGATTCTTCTA
TTGGCTTTGGAGCACCAGTCCGTGCAAACATGAGAACTGGTGGATTGACT
GATGCGCTTGTGACGTCATCATTGTTGGAATCAGTAGATAGTGGTGATCT
TGTAGCATATGGCCTCATTCCTGAATTCATTGGACGGTTTCCGATTTTAG
TGAGCTTGTCAGCTTTAAATGAGGATCAACTTGTTCAGGTTCTCACGGAG
CCCAAAAATGCTCTTGGTAGACAGTACAAGAAGATGTTCAGCATGAATAA
TGTCAAACTGCATTTTACTGATGATGCATTGCGATTGATTGCAAAGAAAG
CAATGGCAAAAAACACTGGTGCTCGGGGTCTAAGAGCCTTATTAGAAAAT
ATTCTAACAGAGGCAATGTTTGAGATTCCGGAAACCAAGATTGGAACTTC
AAGTGTAAATGCAGTATTGGTCGACAAGGAGGCCGTTGGATCAGTGGATG
CACCTGGATGTGGTGCAAAAATTCTTCATGGAGATGGTGAATTGGAACGA
GTTCTCCATGAAACAAAGTCAAAGGATTT
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