CX289162

Overview
NameCX289162
Unique NameCX289162
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length579
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289162 vs. ExPASy Swiss-Prot
Match: CLPX_YERPP (ATP-dependent Clp protease ATP-binding subunit clpX OS=Yersinia pestis (strain Pestoides F) GN=clpX PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 5.709e-35
Identity = 78/169 (46.15%), Postives = 109/169 (64.50%), Query Frame = 2
Query:    2 FVGLEKTISER-RQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKEAVGSVDAP 505
            F GL+K I +R    S IGFGA V+      G ++      LL  V+  DL+ +GLIPEFIGR P++ +LS L+ED L+Q+L EPKNAL +QY+ +FS+  V+L F D+AL  IAKKAMA+ TGARGLR+++E  L + M+++P       SV  V+VD+  +    AP
Sbjct:  251 FAGLDKVIGQRINTGSGIGFGAVVK------GQSEKATEGELLSQVEPEDLIKFGLIPEFIGRLPVVATLSELSEDALIQILKEPKNALTKQYQALFSLEGVELEFRDEALTAIAKKAMARKTGARGLRSIVEGALLDTMYDLP----SMDSVEKVVVDESVIAGQSAP 409          
BLAST of CX289162 vs. ExPASy Swiss-Prot
Match: CLPX_YERPN (ATP-dependent Clp protease ATP-binding subunit clpX OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=clpX PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 5.709e-35
Identity = 78/169 (46.15%), Postives = 109/169 (64.50%), Query Frame = 2
Query:    2 FVGLEKTISER-RQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKEAVGSVDAP 505
            F GL+K I +R    S IGFGA V+      G ++      LL  V+  DL+ +GLIPEFIGR P++ +LS L+ED L+Q+L EPKNAL +QY+ +FS+  V+L F D+AL  IAKKAMA+ TGARGLR+++E  L + M+++P       SV  V+VD+  +    AP
Sbjct:  251 FAGLDKVIGQRINTGSGIGFGAVVK------GQSEKATEGELLSQVEPEDLIKFGLIPEFIGRLPVVATLSELSEDALIQILKEPKNALTKQYQALFSLEGVELEFRDEALTAIAKKAMARKTGARGLRSIVEGALLDTMYDLP----SMDSVEKVVVDESVIAGQSAP 409          
BLAST of CX289162 vs. ExPASy Swiss-Prot
Match: CLPX_YERPG (ATP-dependent Clp protease ATP-binding subunit clpX OS=Yersinia pestis bv. Antiqua (strain Angola) GN=clpX PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 5.709e-35
Identity = 78/169 (46.15%), Postives = 109/169 (64.50%), Query Frame = 2
Query:    2 FVGLEKTISER-RQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKEAVGSVDAP 505
            F GL+K I +R    S IGFGA V+      G ++      LL  V+  DL+ +GLIPEFIGR P++ +LS L+ED L+Q+L EPKNAL +QY+ +FS+  V+L F D+AL  IAKKAMA+ TGARGLR+++E  L + M+++P       SV  V+VD+  +    AP
Sbjct:  251 FAGLDKVIGQRINTGSGIGFGAVVK------GQSEKATEGELLSQVEPEDLIKFGLIPEFIGRLPVVATLSELSEDALIQILKEPKNALTKQYQALFSLEGVELEFRDEALTAIAKKAMARKTGARGLRSIVEGALLDTMYDLP----SMDSVEKVVVDESVIAGQSAP 409          
BLAST of CX289162 vs. ExPASy Swiss-Prot
Match: CLPX_YERPE (ATP-dependent Clp protease ATP-binding subunit clpX OS=Yersinia pestis GN=clpX PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 5.709e-35
Identity = 78/169 (46.15%), Postives = 109/169 (64.50%), Query Frame = 2
Query:    2 FVGLEKTISER-RQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKEAVGSVDAP 505
            F GL+K I +R    S IGFGA V+      G ++      LL  V+  DL+ +GLIPEFIGR P++ +LS L+ED L+Q+L EPKNAL +QY+ +FS+  V+L F D+AL  IAKKAMA+ TGARGLR+++E  L + M+++P       SV  V+VD+  +    AP
Sbjct:  251 FAGLDKVIGQRINTGSGIGFGAVVK------GQSEKATEGELLSQVEPEDLIKFGLIPEFIGRLPVVATLSELSEDALIQILKEPKNALTKQYQALFSLEGVELEFRDEALTAIAKKAMARKTGARGLRSIVEGALLDTMYDLP----SMDSVEKVVVDESVIAGQSAP 409          
BLAST of CX289162 vs. ExPASy Swiss-Prot
Match: CLPX_YERPB (ATP-dependent Clp protease ATP-binding subunit clpX OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=clpX PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 5.709e-35
Identity = 78/169 (46.15%), Postives = 109/169 (64.50%), Query Frame = 2
Query:    2 FVGLEKTISER-RQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKEAVGSVDAP 505
            F GL+K I +R    S IGFGA V+      G ++      LL  V+  DL+ +GLIPEFIGR P++ +LS L+ED L+Q+L EPKNAL +QY+ +FS+  V+L F D+AL  IAKKAMA+ TGARGLR+++E  L + M+++P       SV  V+VD+  +    AP
Sbjct:  251 FAGLDKVIGQRINTGSGIGFGAVVK------GQSEKATEGELLSQVEPEDLIKFGLIPEFIGRLPVVATLSELSEDALIQILKEPKNALTKQYQALFSLEGVELEFRDEALTAIAKKAMARKTGARGLRSIVEGALLDTMYDLP----SMDSVEKVVVDESVIAGQSAP 409          
BLAST of CX289162 vs. ExPASy Swiss-Prot
Match: CLPX_YERPA (ATP-dependent Clp protease ATP-binding subunit clpX OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=clpX PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 5.709e-35
Identity = 78/169 (46.15%), Postives = 109/169 (64.50%), Query Frame = 2
Query:    2 FVGLEKTISER-RQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKEAVGSVDAP 505
            F GL+K I +R    S IGFGA V+      G ++      LL  V+  DL+ +GLIPEFIGR P++ +LS L+ED L+Q+L EPKNAL +QY+ +FS+  V+L F D+AL  IAKKAMA+ TGARGLR+++E  L + M+++P       SV  V+VD+  +    AP
Sbjct:  251 FAGLDKVIGQRINTGSGIGFGAVVK------GQSEKATEGELLSQVEPEDLIKFGLIPEFIGRLPVVATLSELSEDALIQILKEPKNALTKQYQALFSLEGVELEFRDEALTAIAKKAMARKTGARGLRSIVEGALLDTMYDLP----SMDSVEKVVVDESVIAGQSAP 409          
BLAST of CX289162 vs. ExPASy Swiss-Prot
Match: CLPX_YERP3 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=clpX PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 5.709e-35
Identity = 78/169 (46.15%), Postives = 109/169 (64.50%), Query Frame = 2
Query:    2 FVGLEKTISER-RQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKEAVGSVDAP 505
            F GL+K I +R    S IGFGA V+      G ++      LL  V+  DL+ +GLIPEFIGR P++ +LS L+ED L+Q+L EPKNAL +QY+ +FS+  V+L F D+AL  IAKKAMA+ TGARGLR+++E  L + M+++P       SV  V+VD+  +    AP
Sbjct:  251 FAGLDKVIGQRINTGSGIGFGAVVK------GQSEKATEGELLSQVEPEDLIKFGLIPEFIGRLPVVATLSELSEDALIQILKEPKNALTKQYQALFSLEGVELEFRDEALTAIAKKAMARKTGARGLRSIVEGALLDTMYDLP----SMDSVEKVVVDESVIAGQSAP 409          
BLAST of CX289162 vs. ExPASy Swiss-Prot
Match: CLPX_SINMW (ATP-dependent Clp protease ATP-binding subunit clpX OS=Sinorhizobium medicae (strain WSM419) GN=clpX PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 5.709e-35
Identity = 79/170 (46.47%), Postives = 114/170 (67.06%), Query Frame = 2
Query:    2 FVGLEKTISERRQDSSIGFGAPVRA--NMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKEAVGSVDAP 505
            F GL+K IS R + +SIGFGA VRA  + R G          +L  ++  DLV +GLIPEFIGR P+L +L  L+ED L+Q+L+EPKNAL +QY+++F M +V+L+F +DALR IA++A+ + TGARGLR+++E IL + MFE+P  +     V  V++ +E V     P
Sbjct:  253 FAGLDKIISARGEKTSIGFGATVRAPEDRRVG---------EVLRELEPEDLVKFGLIPEFIGRLPVLATLEDLDEDALIQILSEPKNALVKQYQRLFEMEDVELNFHEDALREIARRAIVRKTGARGLRSIMEKILLDTMFELPTLE----GVREVVISEEVVKGTARP 409          
BLAST of CX289162 vs. ExPASy Swiss-Prot
Match: CLPX_SILST (ATP-dependent Clp protease ATP-binding subunit clpX OS=Silicibacter sp. (strain TM1040) GN=clpX PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 5.709e-35
Identity = 77/168 (45.83%), Postives = 111/168 (66.07%), Query Frame = 2
Query:    2 FVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKEAVGSVDAP 505
            F GL+K I +R + S++GFGA VR     G              ++  DL+ +GLIPEF+GR P+L +L  L+ED L+ +LT+PKNAL +QY+++F + + +L FTD+AL  IAKKA+ + TGARGLR++LE+IL + MFE+P    G  SV  V+V++EAV S   P
Sbjct:  251 FAGLDKIIKQRGKGSAMGFGADVREESDAG-------VGETFRDLEPEDLLKFGLIPEFVGRLPVLATLEDLDEDALITILTKPKNALVKQYQRLFELEDTELDFTDEALSAIAKKAIERKTGARGLRSILEDILLDTMFELP----GMESVTKVVVNEEAVCSEAQP 407          
BLAST of CX289162 vs. ExPASy Swiss-Prot
Match: CLPX_RHOSK (ATP-dependent Clp protease ATP-binding subunit clpX OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=clpX PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 7.456e-35
Identity = 79/168 (47.02%), Postives = 112/168 (66.67%), Query Frame = 2
Query:    2 FVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKEAVGSVDAP 505
            F GLEK I++R + S IGFGA V+         DA     L + ++  DL+ +GLIPEF+GR P++ +L+ L+E  LV +LTEPKNAL +QY+++F +  VKL FT DAL  IAK+A+ + TGARGLR+++E+IL + MFE+P    G   V  V+V++EAV S   P
Sbjct:  249 FAGLEKIIAQRGKGSGIGFGAEVKD-------PDARGVGELFKELEPEDLLKFGLIPEFVGRLPVIATLTDLDEAALVTILTEPKNALVKQYQRLFEIEGVKLTFTADALTAIAKRAIKRKTGARGLRSIMEDILLDTMFELP----GLEGVEEVVVNEEAVNSGAKP 405          
The following BLAST results are available for this feature:
BLAST of CX289162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPX_YERPP5.709e-3546.15ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_YERPN5.709e-3546.15ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_YERPG5.709e-3546.15ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_YERPE5.709e-3546.15ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_YERPB5.709e-3546.15ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_YERPA5.709e-3546.15ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_YERP35.709e-3546.15ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_SINMW5.709e-3546.47ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_SILST5.709e-3545.83ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_RHOSK7.456e-3547.02ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionC02009H05SK IF1 Citrus clementina cDNA clone C02009H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289162 ID=CX289162; Name=CX289162; organism=Citrus clementina; type=EST; length=579bp
CTTTGTTGGTTTGGAGAAGACAATTTCAGAGAGACGGCAAGATTCTTCTA
TTGGCTTTGGAGCACCAGTCCGTGCAAACATGAGAACTGGTGGATTGACT
GATGCGCTTGTGACGTCATCATTGTTGGAATCAGTAGATAGTGGTGATCT
TGTAGCATATGGCCTCATTCCTGAATTCATTGGACGGTTTCCGATTTTAG
TGAGCTTGTCAGCTTTAAATGAGGATCAACTTGTTCAGGTTCTCACGGAG
CCCAAAAATGCTCTTGGTAGACAGTACAAGAAGATGTTCAGCATGAATAA
TGTCAAACTGCATTTTACTGATGATGCATTGCGATTGATTGCAAAGAAAG
CAATGGCAAAAAACACTGGTGCTCGGGGTCTAAGAGCCTTATTAGAAAAT
ATTCTAACAGAGGCAATGTTTGAGATTCCGGAAACCAAGATTGGAACTTC
AAGTGTAAATGCAGTATTGGTCGACAAGGAGGCCGTTGGATCAGTGGATG
CACCTGGATGTGGTGCAAAAATTCTTCATGGAGATGGTGAATTGGAACGA
GTTCTCCATGAAACAAAGTCAAAGGATTT
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