CX289162

Overview
NameCX289162
Unique NameCX289162
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length579
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289162 vs. ExPASy Swiss-Prot
Match: CLPX_METNO (ATP-dependent Clp protease ATP-binding subunit clpX OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=clpX PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.406e-33
Identity = 79/178 (44.38%), Postives = 113/178 (63.48%), Query Frame = 2
Query:    2 FVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKEAVGSVDAPGCGAKILHGD 535
            F GLE+ IS R + +SIGFGA V+A        D   T  +  +V+  DL+ +GLIPEF+GR P+L +L  L+E  L ++L EPKNAL +QY+++F M NV L F ++AL L+A+KA+ + TGARGLR++LE+IL E M+++P    G  SV  V++  E V     P      +HGD
Sbjct:  250 FAGLERIISARGKGTSIGFGATVQA-------PDDRRTGEIFRNVEPEDLLKFGLIPEFVGRLPVLATLEDLDEIALKRILQEPKNALVKQYQRLFEMENVDLTFQEEALTLVARKAIERKTGARGLRSILESILLETMYDLP----GLDSVEQVVIGPEVVDGKARP----LYIHGD 412          
BLAST of CX289162 vs. ExPASy Swiss-Prot
Match: CLPX_BEII9 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=clpX PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.406e-33
Identity = 74/168 (44.05%), Postives = 109/168 (64.88%), Query Frame = 2
Query:    2 FVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKEAVGSVDAP 505
            F GLEK IS R + +SIGF A V+A        D   T  +   V+  DL+ +GLIPEF+GR P++ +L  L+E+ L ++LTEPKNAL +QY+++F M N +L F D+AL ++AKKA+ + TGARGLR+++E+IL + MF++P    G  SV  V++  + V     P
Sbjct:  250 FAGLEKIISTRGKTTSIGFAASVQA-------PDDRRTGEIFRKVEPEDLLKFGLIPEFVGRLPVIATLEDLDEEALKKILTEPKNALVKQYQRLFEMENTELTFQDEALNVVAKKAIERKTGARGLRSIMESILLDTMFDLP----GLDSVEQVVIGPDVVEGKSRP 406          
BLAST of CX289162 vs. ExPASy Swiss-Prot
Match: CLPX_SHELP (ATP-dependent Clp protease ATP-binding subunit clpX OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=clpX PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.837e-33
Identity = 78/169 (46.15%), Postives = 109/169 (64.50%), Query Frame = 2
Query:    2 FVGLEKTISERRQ-DSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKEAVGSVDAP 505
            F GLEK I +R    + IGFGA V+      G  D    S +L  V+  DLV YGLIPEFIGR P+L +L+ L+E  L+Q+L+EPKNAL +Q+  +F M  V+L F +DAL+ IA KAM + TGARGLR+++E IL + M+++P T+    +V  V++D+  V    AP
Sbjct:  252 FAGLEKVIEQRSHVGTGIGFGAEVK------GEADKATISDVLLQVEPEDLVKYGLIPEFIGRLPVLATLAELDEAALIQILSEPKNALTKQFAALFEMEGVELEFREDALKAIALKAMDRKTGARGLRSIVEGILLDIMYDLPSTE----NVAKVVIDESVVKGESAP 410          
BLAST of CX289162 vs. ExPASy Swiss-Prot
Match: CLPX_PSEMY (ATP-dependent Clp protease ATP-binding subunit clpX OS=Pseudomonas mendocina (strain ymp) GN=clpX PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.837e-33
Identity = 74/168 (44.05%), Postives = 104/168 (61.90%), Query Frame = 2
Query:    2 FVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKEAVGSVDAP 505
            F GLEK I  R     IGFGA VR+      + ++L        V+  DLV +GLIPEF+GR P++ +L  L+E  LVQ+LTEPKNAL +QY K+F M  V L F  DAL+ +A++A+ + TGARGLR++LE IL + M+EIP  +     V+ V++D+  +     P
Sbjct:  252 FAGLEKVIQARSTKGGIGFGAEVRSKQEGKKIGESL------REVEPDDLVKFGLIPEFVGRLPVIATLEELDEAALVQILTEPKNALTKQYAKLFEMEGVDLEFRSDALKSVAQRALERKTGARGLRSILEGILLDTMYEIPSQQ----DVSKVVIDESVIDGSSKP 409          
BLAST of CX289162 vs. ExPASy Swiss-Prot
Match: CLPX_DINSH (ATP-dependent Clp protease ATP-binding subunit clpX OS=Dinoroseobacter shibae (strain DFL 12) GN=clpX PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.837e-33
Identity = 73/168 (43.45%), Postives = 112/168 (66.67%), Query Frame = 2
Query:    2 FVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKEAVGSVDAP 505
            F GLEK I++R + S+IGFGA V+ N   G          +   ++  DL+ +GLIPEF+GR P++ +L+ L+ED LV +LT+PKNAL +QY+++F + + +L FT+DAL  IA +A+ + TGARGLR++LE+IL   MF++P    G  +V+ V+V++E V     P
Sbjct:  248 FAGLEKIIAQRGKGSAIGFGADVKENDTRG-------VGEMFGELEPEDLLKFGLIPEFVGRLPVIATLTDLDEDALVTILTQPKNALVKQYQRLFELEDAQLTFTEDALNAIAGRAIERKTGARGLRSILEDILLNTMFDLP----GLDNVDEVVVNEEVVSGDAQP 404          
BLAST of CX289162 vs. ExPASy Swiss-Prot
Match: CLPX_CAUCR (ATP-dependent Clp protease ATP-binding subunit clpX OS=Caulobacter crescentus GN=clpX PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.837e-33
Identity = 80/164 (48.78%), Postives = 106/164 (64.63%), Query Frame = 2
Query:    2 FVGLEKTISERRQDSSIGFGAPVR--ANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKEAV 487
            F GLEK IS R    SIGFGA V      RTG          +L +V+  DL  +GLIPEFIGR P++ +L  L+E  LV++LTEPKNA  +QY+++F M N+ L FT+DAL  +AKKA+A+ TGARGLR+++E IL E MFE+P  +     V  V+V+ E V
Sbjct:  250 FAGLEKIISARGAAKSIGFGAKVTDPEERRTG---------EILRNVEPDDLQRFGLIPEFIGRLPVVATLEDLDEAALVKILTEPKNAFVKQYQRLFEMENIGLTFTEDALHQVAKKAIARKTGARGLRSIMEGILLETMFELPTYE----GVEEVVVNAEVV 400          
BLAST of CX289162 vs. ExPASy Swiss-Prot
Match: CLPX_CAUCN (ATP-dependent Clp protease ATP-binding subunit clpX OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=clpX PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.837e-33
Identity = 80/164 (48.78%), Postives = 106/164 (64.63%), Query Frame = 2
Query:    2 FVGLEKTISERRQDSSIGFGAPVR--ANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKEAV 487
            F GLEK IS R    SIGFGA V      RTG          +L +V+  DL  +GLIPEFIGR P++ +L  L+E  LV++LTEPKNA  +QY+++F M N+ L FT+DAL  +AKKA+A+ TGARGLR+++E IL E MFE+P  +     V  V+V+ E V
Sbjct:  250 FAGLEKIISARGAAKSIGFGAKVTDPEERRTG---------EILRNVEPDDLQRFGLIPEFIGRLPVVATLEDLDEAALVKILTEPKNAFVKQYQRLFEMENIGLTFTEDALHQVAKKAIARKTGARGLRSIMEGILLETMFELPTYE----GVEEVVVNAEVV 400          
BLAST of CX289162 vs. ExPASy Swiss-Prot
Match: CLPX2_METCA (ATP-dependent Clp protease ATP-binding subunit clpX 2 OS=Methylococcus capsulatus GN=clpX2 PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.837e-33
Identity = 72/168 (42.86%), Postives = 108/168 (64.29%), Query Frame = 2
Query:    2 FVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKEAVGSVDAP 505
            F GLEK I  R +   IGF A V++        D+     +L  V++ DL+ YGLIPEF+GR P++ +L  L+E  LV++LTEPKNAL +QY+++F M + +L   DDAL  IA+KAMA+ TGARGLR +LE+ L + M+E+P ++     ++ V+VD++ +     P
Sbjct:  255 FAGLEKIIRSRSEQGGIGFAADVKSK------DDSRNVGEVLADVEAEDLIRYGLIPEFVGRLPVVATLEELDEAALVRILTEPKNALVKQYRRLFEMESCELEIRDDALGAIARKAMARKTGARGLRTILEHTLLDTMYELPSSE----RISKVVVDEKVINGESEP 412          
BLAST of CX289162 vs. ExPASy Swiss-Prot
Match: CLPX_SYMTH (ATP-dependent Clp protease ATP-binding subunit clpX OS=Symbiobacterium thermophilum GN=clpX PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.399e-33
Identity = 71/162 (43.83%), Postives = 110/162 (67.90%), Query Frame = 2
Query:    2 FVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKEAV 487
            F G++K I+ R   S +GFGA +R+               LL+ +   DL+ +GLIPEFIGR PI+V+L AL+ED LV++L EPKNAL +QY+K+  ++N++L F ++A+R IAK+A+ +NTGARGLRA++E+I+T+ M+E+P      + V   ++ K+ V
Sbjct:  249 FDGIDKIIANRVGRSGLGFGADIRSKQEQN-------VGELLKQIMPEDLLKFGLIPEFIGRLPIVVTLDALDEDALVRILREPKNALVKQYQKLLQLDNIELEFEEEAVRAIAKEALRRNTGARGLRAIIEDIMTDVMYEVP----SRTDVTKCVITKDVV 399          
BLAST of CX289162 vs. ExPASy Swiss-Prot
Match: CLPX_SPHAL (ATP-dependent Clp protease ATP-binding subunit clpX OS=Sphingopyxis alaskensis GN=clpX PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.399e-33
Identity = 75/162 (46.30%), Postives = 106/162 (65.43%), Query Frame = 2
Query:    2 FVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKEAV 487
            F GLEK I +R Q  SIGFGA V          D      +L+ ++  DL+ +GLIPEF+GR P++ +L  L+ D LV++L EPKNAL +QYKK+F +  V L FTDDAL  +AKKA+ + TGARGLR+++E IL + MF++P+     + V  ++VDK+ V
Sbjct:  251 FAGLEKIIGDRLQGKSIGFGAHVAG-------PDERRAGEVLKQIEPEDLLKFGLIPEFVGRLPVIATLEDLDVDALVKILGEPKNALVKQYKKLFDLEEVALTFTDDALVAVAKKAIERKTGARGLRSIVEAILLDTMFDLPD----LTDVVEIVVDKDVV 401          
The following BLAST results are available for this feature:
BLAST of CX289162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPX_METNO1.406e-3344.38ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_BEII91.406e-3344.05ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_SHELP1.837e-3346.15ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_PSEMY1.837e-3344.05ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_DINSH1.837e-3343.45ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_CAUCR1.837e-3348.78ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_CAUCN1.837e-3348.78ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX2_METCA1.837e-3342.86ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_SYMTH2.399e-3343.83ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPX_SPHAL2.399e-3346.30ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionC02009H05SK IF1 Citrus clementina cDNA clone C02009H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289162 ID=CX289162; Name=CX289162; organism=Citrus clementina; type=EST; length=579bp
CTTTGTTGGTTTGGAGAAGACAATTTCAGAGAGACGGCAAGATTCTTCTA
TTGGCTTTGGAGCACCAGTCCGTGCAAACATGAGAACTGGTGGATTGACT
GATGCGCTTGTGACGTCATCATTGTTGGAATCAGTAGATAGTGGTGATCT
TGTAGCATATGGCCTCATTCCTGAATTCATTGGACGGTTTCCGATTTTAG
TGAGCTTGTCAGCTTTAAATGAGGATCAACTTGTTCAGGTTCTCACGGAG
CCCAAAAATGCTCTTGGTAGACAGTACAAGAAGATGTTCAGCATGAATAA
TGTCAAACTGCATTTTACTGATGATGCATTGCGATTGATTGCAAAGAAAG
CAATGGCAAAAAACACTGGTGCTCGGGGTCTAAGAGCCTTATTAGAAAAT
ATTCTAACAGAGGCAATGTTTGAGATTCCGGAAACCAAGATTGGAACTTC
AAGTGTAAATGCAGTATTGGTCGACAAGGAGGCCGTTGGATCAGTGGATG
CACCTGGATGTGGTGCAAAAATTCTTCATGGAGATGGTGAATTGGAACGA
GTTCTCCATGAAACAAAGTCAAAGGATTT
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