CX289162
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX289162 vs. ExPASy Swiss-Prot
Match: CLPX_METNO (ATP-dependent Clp protease ATP-binding subunit clpX OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=clpX PE=3 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 1.406e-33 Identity = 79/178 (44.38%), Postives = 113/178 (63.48%), Query Frame = 2 Query: 2 FVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKEAVGSVDAPGCGAKILHGD 535 F GLE+ IS R + +SIGFGA V+A D T + +V+ DL+ +GLIPEF+GR P+L +L L+E L ++L EPKNAL +QY+++F M NV L F ++AL L+A+KA+ + TGARGLR++LE+IL E M+++P G SV V++ E V P +HGD Sbjct: 250 FAGLERIISARGKGTSIGFGATVQA-------PDDRRTGEIFRNVEPEDLLKFGLIPEFVGRLPVLATLEDLDEIALKRILQEPKNALVKQYQRLFEMENVDLTFQEEALTLVARKAIERKTGARGLRSILESILLETMYDLP----GLDSVEQVVIGPEVVDGKARP----LYIHGD 412
BLAST of CX289162 vs. ExPASy Swiss-Prot
Match: CLPX_BEII9 (ATP-dependent Clp protease ATP-binding subunit clpX OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=clpX PE=3 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 1.406e-33 Identity = 74/168 (44.05%), Postives = 109/168 (64.88%), Query Frame = 2 Query: 2 FVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKEAVGSVDAP 505 F GLEK IS R + +SIGF A V+A D T + V+ DL+ +GLIPEF+GR P++ +L L+E+ L ++LTEPKNAL +QY+++F M N +L F D+AL ++AKKA+ + TGARGLR+++E+IL + MF++P G SV V++ + V P Sbjct: 250 FAGLEKIISTRGKTTSIGFAASVQA-------PDDRRTGEIFRKVEPEDLLKFGLIPEFVGRLPVIATLEDLDEEALKKILTEPKNALVKQYQRLFEMENTELTFQDEALNVVAKKAIERKTGARGLRSIMESILLDTMFDLP----GLDSVEQVVIGPDVVEGKSRP 406
BLAST of CX289162 vs. ExPASy Swiss-Prot
Match: CLPX_SHELP (ATP-dependent Clp protease ATP-binding subunit clpX OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=clpX PE=3 SV=1) HSP 1 Score: 142.124 bits (357), Expect = 1.837e-33 Identity = 78/169 (46.15%), Postives = 109/169 (64.50%), Query Frame = 2 Query: 2 FVGLEKTISERRQ-DSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKEAVGSVDAP 505 F GLEK I +R + IGFGA V+ G D S +L V+ DLV YGLIPEFIGR P+L +L+ L+E L+Q+L+EPKNAL +Q+ +F M V+L F +DAL+ IA KAM + TGARGLR+++E IL + M+++P T+ +V V++D+ V AP Sbjct: 252 FAGLEKVIEQRSHVGTGIGFGAEVK------GEADKATISDVLLQVEPEDLVKYGLIPEFIGRLPVLATLAELDEAALIQILSEPKNALTKQFAALFEMEGVELEFREDALKAIALKAMDRKTGARGLRSIVEGILLDIMYDLPSTE----NVAKVVIDESVVKGESAP 410
BLAST of CX289162 vs. ExPASy Swiss-Prot
Match: CLPX_PSEMY (ATP-dependent Clp protease ATP-binding subunit clpX OS=Pseudomonas mendocina (strain ymp) GN=clpX PE=3 SV=1) HSP 1 Score: 142.124 bits (357), Expect = 1.837e-33 Identity = 74/168 (44.05%), Postives = 104/168 (61.90%), Query Frame = 2 Query: 2 FVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKEAVGSVDAP 505 F GLEK I R IGFGA VR+ + ++L V+ DLV +GLIPEF+GR P++ +L L+E LVQ+LTEPKNAL +QY K+F M V L F DAL+ +A++A+ + TGARGLR++LE IL + M+EIP + V+ V++D+ + P Sbjct: 252 FAGLEKVIQARSTKGGIGFGAEVRSKQEGKKIGESL------REVEPDDLVKFGLIPEFVGRLPVIATLEELDEAALVQILTEPKNALTKQYAKLFEMEGVDLEFRSDALKSVAQRALERKTGARGLRSILEGILLDTMYEIPSQQ----DVSKVVIDESVIDGSSKP 409
BLAST of CX289162 vs. ExPASy Swiss-Prot
Match: CLPX_DINSH (ATP-dependent Clp protease ATP-binding subunit clpX OS=Dinoroseobacter shibae (strain DFL 12) GN=clpX PE=3 SV=1) HSP 1 Score: 142.124 bits (357), Expect = 1.837e-33 Identity = 73/168 (43.45%), Postives = 112/168 (66.67%), Query Frame = 2 Query: 2 FVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKEAVGSVDAP 505 F GLEK I++R + S+IGFGA V+ N G + ++ DL+ +GLIPEF+GR P++ +L+ L+ED LV +LT+PKNAL +QY+++F + + +L FT+DAL IA +A+ + TGARGLR++LE+IL MF++P G +V+ V+V++E V P Sbjct: 248 FAGLEKIIAQRGKGSAIGFGADVKENDTRG-------VGEMFGELEPEDLLKFGLIPEFVGRLPVIATLTDLDEDALVTILTQPKNALVKQYQRLFELEDAQLTFTEDALNAIAGRAIERKTGARGLRSILEDILLNTMFDLP----GLDNVDEVVVNEEVVSGDAQP 404
BLAST of CX289162 vs. ExPASy Swiss-Prot
Match: CLPX_CAUCR (ATP-dependent Clp protease ATP-binding subunit clpX OS=Caulobacter crescentus GN=clpX PE=3 SV=1) HSP 1 Score: 142.124 bits (357), Expect = 1.837e-33 Identity = 80/164 (48.78%), Postives = 106/164 (64.63%), Query Frame = 2 Query: 2 FVGLEKTISERRQDSSIGFGAPVR--ANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKEAV 487 F GLEK IS R SIGFGA V RTG +L +V+ DL +GLIPEFIGR P++ +L L+E LV++LTEPKNA +QY+++F M N+ L FT+DAL +AKKA+A+ TGARGLR+++E IL E MFE+P + V V+V+ E V Sbjct: 250 FAGLEKIISARGAAKSIGFGAKVTDPEERRTG---------EILRNVEPDDLQRFGLIPEFIGRLPVVATLEDLDEAALVKILTEPKNAFVKQYQRLFEMENIGLTFTEDALHQVAKKAIARKTGARGLRSIMEGILLETMFELPTYE----GVEEVVVNAEVV 400
BLAST of CX289162 vs. ExPASy Swiss-Prot
Match: CLPX_CAUCN (ATP-dependent Clp protease ATP-binding subunit clpX OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=clpX PE=3 SV=1) HSP 1 Score: 142.124 bits (357), Expect = 1.837e-33 Identity = 80/164 (48.78%), Postives = 106/164 (64.63%), Query Frame = 2 Query: 2 FVGLEKTISERRQDSSIGFGAPVR--ANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKEAV 487 F GLEK IS R SIGFGA V RTG +L +V+ DL +GLIPEFIGR P++ +L L+E LV++LTEPKNA +QY+++F M N+ L FT+DAL +AKKA+A+ TGARGLR+++E IL E MFE+P + V V+V+ E V Sbjct: 250 FAGLEKIISARGAAKSIGFGAKVTDPEERRTG---------EILRNVEPDDLQRFGLIPEFIGRLPVVATLEDLDEAALVKILTEPKNAFVKQYQRLFEMENIGLTFTEDALHQVAKKAIARKTGARGLRSIMEGILLETMFELPTYE----GVEEVVVNAEVV 400
BLAST of CX289162 vs. ExPASy Swiss-Prot
Match: CLPX2_METCA (ATP-dependent Clp protease ATP-binding subunit clpX 2 OS=Methylococcus capsulatus GN=clpX2 PE=3 SV=1) HSP 1 Score: 142.124 bits (357), Expect = 1.837e-33 Identity = 72/168 (42.86%), Postives = 108/168 (64.29%), Query Frame = 2 Query: 2 FVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKEAVGSVDAP 505 F GLEK I R + IGF A V++ D+ +L V++ DL+ YGLIPEF+GR P++ +L L+E LV++LTEPKNAL +QY+++F M + +L DDAL IA+KAMA+ TGARGLR +LE+ L + M+E+P ++ ++ V+VD++ + P Sbjct: 255 FAGLEKIIRSRSEQGGIGFAADVKSK------DDSRNVGEVLADVEAEDLIRYGLIPEFVGRLPVVATLEELDEAALVRILTEPKNALVKQYRRLFEMESCELEIRDDALGAIARKAMARKTGARGLRTILEHTLLDTMYELPSSE----RISKVVVDEKVINGESEP 412
BLAST of CX289162 vs. ExPASy Swiss-Prot
Match: CLPX_SYMTH (ATP-dependent Clp protease ATP-binding subunit clpX OS=Symbiobacterium thermophilum GN=clpX PE=3 SV=1) HSP 1 Score: 141.739 bits (356), Expect = 2.399e-33 Identity = 71/162 (43.83%), Postives = 110/162 (67.90%), Query Frame = 2 Query: 2 FVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKEAV 487 F G++K I+ R S +GFGA +R+ LL+ + DL+ +GLIPEFIGR PI+V+L AL+ED LV++L EPKNAL +QY+K+ ++N++L F ++A+R IAK+A+ +NTGARGLRA++E+I+T+ M+E+P + V ++ K+ V Sbjct: 249 FDGIDKIIANRVGRSGLGFGADIRSKQEQN-------VGELLKQIMPEDLLKFGLIPEFIGRLPIVVTLDALDEDALVRILREPKNALVKQYQKLLQLDNIELEFEEEAVRAIAKEALRRNTGARGLRAIIEDIMTDVMYEVP----SRTDVTKCVITKDVV 399
BLAST of CX289162 vs. ExPASy Swiss-Prot
Match: CLPX_SPHAL (ATP-dependent Clp protease ATP-binding subunit clpX OS=Sphingopyxis alaskensis GN=clpX PE=3 SV=1) HSP 1 Score: 141.739 bits (356), Expect = 2.399e-33 Identity = 75/162 (46.30%), Postives = 106/162 (65.43%), Query Frame = 2 Query: 2 FVGLEKTISERRQDSSIGFGAPVRANMRTGGLTDALVTSSLLESVDSGDLVAYGLIPEFIGRFPILVSLSALNEDQLVQVLTEPKNALGRQYKKMFSMNNVKLHFTDDALRLIAKKAMAKNTGARGLRALLENILTEAMFEIPETKIGTSSVNAVLVDKEAV 487 F GLEK I +R Q SIGFGA V D +L+ ++ DL+ +GLIPEF+GR P++ +L L+ D LV++L EPKNAL +QYKK+F + V L FTDDAL +AKKA+ + TGARGLR+++E IL + MF++P+ + V ++VDK+ V Sbjct: 251 FAGLEKIIGDRLQGKSIGFGAHVAG-------PDERRAGEVLKQIEPEDLLKFGLIPEFVGRLPVIATLEDLDVDALVKILGEPKNALVKQYKKLFDLEEVALTFTDDALVAVAKKAIERKTGARGLRSIVEAILLDTMFDLPD----LTDVVEIVVDKDVV 401 The following BLAST results are available for this feature:
BLAST of CX289162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX289162 ID=CX289162; Name=CX289162; organism=Citrus clementina; type=EST; length=579bpback to top |