CX289170

Overview
NameCX289170
Unique NameCX289170
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length433
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289170 vs. ExPASy Swiss-Prot
Match: FAD3D_ARATH (Temperature-sensitive omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD8 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.326e-13
Identity = 32/54 (59.26%), Postives = 42/54 (77.78%), Query Frame = 3
Query:    3 GALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQ 164
            G L T+DRDYG +N + H+I  THV HHLF  +PHYH +EAT+A KP+LG+YY+
Sbjct:  337 GGLTTLDRDYGWINNIHHDI-GTHVIHHLFPQIPHYHLVEATEAAKPVLGKYYR 389          
BLAST of CX289170 vs. ExPASy Swiss-Prot
Match: FAD3C_SESIN (Omega-3 fatty acid desaturase, chloroplastic OS=Sesamum indicum GN=FAD7 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.326e-13
Identity = 32/54 (59.26%), Postives = 42/54 (77.78%), Query Frame = 3
Query:    3 GALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQ 164
            G L T+DRDYG +N + H+I  THV HHLF  +PHYH +EAT+A KP+LG+YY+
Sbjct:  348 GGLTTLDRDYGWINNIHHDI-GTHVIHHLFPQIPHYHLIEATEAAKPVLGKYYR 400          
BLAST of CX289170 vs. ExPASy Swiss-Prot
Match: FAD3E_ARATH (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD3 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.261e-13
Identity = 32/54 (59.26%), Postives = 40/54 (74.07%), Query Frame = 3
Query:    3 GALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQ 164
            G L T+DRDYGI N + H+I  THV HHLF  +PHYH ++ATKA K +LG YY+
Sbjct:  282 GGLTTIDRDYGIFNNIHHDI-GTHVIHHLFPQIPHYHLVDATKAAKHVLGRYYR 334          
BLAST of CX289170 vs. ExPASy Swiss-Prot
Match: FAD3C_RICCO (Omega-3 fatty acid desaturase, chloroplastic OS=Ricinus communis GN=FAD7A-1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.261e-13
Identity = 31/54 (57.41%), Postives = 42/54 (77.78%), Query Frame = 3
Query:    3 GALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQ 164
            G L T+DRDYG +N + H+I  THV HHLF  +PHYH +EAT+A KP++G+YY+
Sbjct:  358 GGLTTLDRDYGWINNIHHDI-GTHVIHHLFPQIPHYHLVEATEAAKPVMGKYYR 410          
BLAST of CX289170 vs. ExPASy Swiss-Prot
Match: FAD3E_PHAAU (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Phaseolus aureus GN=ARG1 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.953e-13
Identity = 33/54 (61.11%), Postives = 41/54 (75.93%), Query Frame = 3
Query:    3 GALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQ 164
            G L TVDRDYG +N V H+I  THV HHLF  +PHYH +EATK+ K +LG+YY+
Sbjct:  278 GGLTTVDRDYGWINNVHHDI-GTHVIHHLFPQIPHYHLVEATKSAKSVLGKYYR 330          
BLAST of CX289170 vs. ExPASy Swiss-Prot
Match: FAD3E_SOYBN (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Glycine max GN=FAD3 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.857e-13
Identity = 32/54 (59.26%), Postives = 41/54 (75.93%), Query Frame = 3
Query:    3 GALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQ 164
            G L TVDRDYG +  + H+I  THV HHLF  +PHYH +EAT+A KP+LG+YY+
Sbjct:  281 GGLTTVDRDYGWIYNIHHDI-GTHVIHHLFPQIPHYHLVEATQAAKPVLGDYYR 333          
BLAST of CX289170 vs. ExPASy Swiss-Prot
Match: FAD3C_SOYBN (Omega-3 fatty acid desaturase, chloroplastic OS=Glycine max GN=FAD7 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.857e-13
Identity = 31/54 (57.41%), Postives = 41/54 (75.93%), Query Frame = 3
Query:    3 GALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQ 164
            G L T+DRDYG +N + H+I  THV HHLF  +PHYH +EAT+A KP+ G+YY+
Sbjct:  352 GGLTTLDRDYGWINNIHHDI-GTHVIHHLFPQIPHYHLVEATEAAKPVFGKYYR 404          
BLAST of CX289170 vs. ExPASy Swiss-Prot
Match: FAD3E_BRANA (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Brassica napus GN=FAD3 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 5.038e-13
Identity = 31/54 (57.41%), Postives = 40/54 (74.07%), Query Frame = 3
Query:    3 GALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQ 164
            G L T+DRDYGI N + H+I  THV HHLF  +PHYH ++AT+A K +LG YY+
Sbjct:  279 GGLTTIDRDYGIFNNIHHDI-GTHVIHHLFPQIPHYHLVDATRAAKHVLGRYYR 331          
The following BLAST results are available for this feature:
BLAST of CX289170 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
FAD3D_ARATH1.326e-1359.26Temperature-sensitive omega-3 fatty acid desaturas... [more]
FAD3C_SESIN1.326e-1359.26Omega-3 fatty acid desaturase, chloroplastic OS=Se... [more]
FAD3E_ARATH2.261e-1359.26Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3C_RICCO2.261e-1357.41Omega-3 fatty acid desaturase, chloroplastic OS=Ri... [more]
FAD3E_PHAAU2.953e-1361.11Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3E_SOYBN3.857e-1359.26Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3C_SOYBN3.857e-1357.41Omega-3 fatty acid desaturase, chloroplastic OS=Gl... [more]
FAD3E_BRANA5.038e-1357.41Omega-3 fatty acid desaturase, endoplasmic reticul... [more]

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Properties
Property NameValue
Genbank descriptionC02010A03SK IF1 Citrus clementina cDNA clone C02010A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289170 ID=CX289170; Name=CX289170; organism=Citrus clementina; type=EST; length=433bp
GAGGAGCCCTAGCAACTGTTGATAGAGACTATGGGATCTTGAACAAGGTC
TTCCATAACATTACTGATACTCATGTAGCTCACCATTTGTTTTCAACAAT
GCCACATTATCATGCAATGGAGGCTACGAAGGCAATAAAGCCAATTTTGG
GAGAATATTATCAGTTCGATGGGACTCCATTTTATAAGGCAATGTGGAGG
GAAGCAAAGGAGTGTCTTTACGTTGAACCGGACGAAGGTGACCAGAACAA
AGGTGTCTTCTGGTACAGAAATAAGATTTGAATTTGAGGAAAAGTTGTAG
CAAAAATGCCATATGGGAAGTTTTGTGTTTCTTGTCCGGTAATTTGGCTT
CCCTTTTGTGGTGATTGAGGTTGTTCTGTTACTTTTAATTGAACTTTAAT
TATAGACTTTTAGTTAAAAAAAAAAAAAAAAAA
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