CX289173

Overview
NameCX289173
Unique NameCX289173
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length613
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289173 vs. ExPASy Swiss-Prot
Match: TIP12_ORYSJ (Probable aquaporin TIP1-2 OS=Oryza sativa subsp. japonica GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.021e-12
Identity = 41/112 (36.61%), Postives = 61/112 (54.46%), Query Frame = 1
Query:  211 PGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTV--GIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVK 540
            PGELS     +A +AEF++  +F++    + M  SK      T   G+   + A    +F  V   A ISGGH+NPAVTFG F+   +SL +AV Y + Q LG++    ++K
Sbjct:   11 PGELSHPDTAKAAVAEFISMLIFVFAGSGSGMAFSKLTDGGGTTPSGLIAASLAHALALFVAVAVGANISGGHVNPAVTFGAFVGGNISLVKAVVYWVAQLLGSVVACLLLK 122          
BLAST of CX289173 vs. ExPASy Swiss-Prot
Match: AQP5_HUMAN (Aquaporin-5 OS=Homo sapiens GN=AQP5 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.021e-12
Identity = 42/109 (38.53%), Postives = 62/109 (56.88%), Query Frame = 1
Query:  217 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKG 543
            E+ S +F +A  AEF+AT +F++  + + +     K   +   I  IA AFG  I  L      +SGGHINPA+T  L +  ++SL RA FY+  Q +GAI GA ++ G
Sbjct:    4 EVCSVAFLKAVFAEFLATLIFVFFGLGSAL-----KWPSALPTILQIALAFGLAIGTLAQALGPVSGGHINPAITLALLVGNQISLLRAFFYVAAQLVGAIAGAGILYG 107          
BLAST of CX289173 vs. ExPASy Swiss-Prot
Match: TIP21_ARATH (Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 2.640e-12
Identity = 40/102 (39.22%), Postives = 60/102 (58.82%), Query Frame = 1
Query:  241 RAGIAEFVATFLFLYITVLTVMGVSK--SKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVK 540
            RA +AEF++T LF++  V + +  +K  S +   T G+  IA   G  +F  V   A ISGGH+NPAVTFGL +  ++++   VFY I Q LG+     ++K
Sbjct:   19 RAYLAEFISTLLFVFAGVGSAIAYAKLTSDAALDTPGLVAIAVCHGFALFVAVAIGANISGGHVNPAVTFGLAVGGQITVITGVFYWIAQLLGSTAACFLLK 120          
BLAST of CX289173 vs. ExPASy Swiss-Prot
Match: MIP_HUMAN (Lens fiber major intrinsic protein OS=Homo sapiens GN=MIP PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.448e-12
Identity = 43/107 (40.19%), Postives = 59/107 (55.14%), Query Frame = 1
Query:  217 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVV 537
            EL S SF+RA  AEF AT  +++  +      S  +     + +  +A AFG  +  LV     ISG H+NPAVTF   +  ++SL RA  YM  Q LGA+ GAAV+
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFGL-----GSSLRWAPGPLHVLQVAMAFGLALATLVQSVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYMAAQLLGAVAGAAVL 104          
BLAST of CX289173 vs. ExPASy Swiss-Prot
Match: MIP_CANFA (Lens fiber major intrinsic protein OS=Canis familiaris GN=MIP PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.448e-12
Identity = 44/107 (41.12%), Postives = 60/107 (56.07%), Query Frame = 1
Query:  217 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVV 537
            EL S SF+RA  AEF AT  +++      +G S   +    + +  +A AFG  +  LV     ISG H+NPAVTF   +  ++SL RA  YM  Q LGA+ GAAV+
Sbjct:    3 ELRSASFWRAIFAEFFATLFYVFFG----LGASLRWTP-GPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAFCYMAAQLLGAVAGAAVL 104          
BLAST of CX289173 vs. ExPASy Swiss-Prot
Match: YI7H_SCHPO (Uncharacterized membrane protein C977.17 OS=Schizosaccharomyces pombe GN=SPAC977.17 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.503e-12
Identity = 46/124 (37.10%), Postives = 58/124 (46.77%), Query Frame = 1
Query:  235 FYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQG------IAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANM 588
            F+R G AEF+ T       VL V GV  +     T G  G       AW FG M+   VY   GISGGH+NPAVT  L + RK    +   Y+  Q  GA  G A+  G+  S      GG ++
Sbjct:  309 FFREGFAEFLGTL------VLVVFGVGSNLQATVTNGAGGSFESLSFAWGFGCMLG--VYIAGGISGGHVNPAVTISLAIFRKFPWYKVPIYIFFQIWGAFFGGALAYGYHWSSITEFEGGKDI 424          
BLAST of CX289173 vs. ExPASy Swiss-Prot
Match: TIP31_ORYSJ (Probable aquaporin TIP3-1 OS=Oryza sativa subsp. japonica GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.503e-12
Identity = 37/101 (36.63%), Postives = 59/101 (58.42%), Query Frame = 1
Query:  241 RAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVG-IQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVK 540
            RA I+EF+AT +F++    +++ + K     ST G +  ++ A    +   V     ISGGH+NPA+TFG  L  +LSL RA+FY + Q LGA+    +++
Sbjct:   27 RAAISEFLATAIFVFAAEGSILSLGKLYQDMSTPGGLVAVSLAHALALAVAVAVAVNISGGHVNPAITFGALLGGRLSLIRALFYWLAQLLGAVVATLLLR 127          
BLAST of CX289173 vs. ExPASy Swiss-Prot
Match: TIP1_MEDTR (Probable aquaporin TIP-type OS=Medicago truncatula GN=AQP1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.503e-12
Identity = 44/136 (32.35%), Postives = 71/136 (52.21%), Query Frame = 1
Query:  211 PGELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSK--SKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVVKGFQKSQYEMLGGGANMLSKGYSKG 612
            P E +     +AG+AEF++TF+F++    + +  +K  +    +  G+   + A    +F  V   A ISGGH+NPAVTFG F+   ++L R + Y+I Q LG+I  +A++     S     G     LS+G   G
Sbjct:   11 PQEATHPDTLKAGLAEFISTFIFVFAGSGSGIAYNKLTNDGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLLRGIVYIIAQLLGSIVASALLVFVTASSVPAFG-----LSEGVGVG 141          
BLAST of CX289173 vs. ExPASy Swiss-Prot
Match: AQP2_SHEEP (Aquaporin-2 OS=Ovis aries GN=AQP2 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.881e-12
Identity = 43/107 (40.19%), Postives = 61/107 (57.01%), Query Frame = 1
Query:  217 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVV 537
            EL S +F RA +AEF+AT LF++  + + +   ++        +  IA AFG  I  LV     +SG HINPAVT    +   +S  RAVFY+  Q LGA+ GAA++
Sbjct:    3 ELRSIAFSRAVLAEFLATLLFVFFGLGSALNWPQALPS-----VLQIAMAFGLAIGTLVQALGHVSGAHINPAVTVACLVGCHVSFLRAVFYVAAQLLGAVAGAALL 104          
BLAST of CX289173 vs. ExPASy Swiss-Prot
Match: AQP2_BOVIN (Aquaporin-2 OS=Bos taurus GN=AQP2 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 5.881e-12
Identity = 43/107 (40.19%), Postives = 61/107 (57.01%), Query Frame = 1
Query:  217 ELSSWSFYRAGIAEFVATFLFLYITVLTVMGVSKSKSKCSTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMIMQCLGAICGAAVV 537
            EL S +F RA +AEF+AT LF++  + + +   ++        +  IA AFG  I  LV     +SG HINPAVT    +   +S  RAVFY+  Q LGA+ GAA++
Sbjct:    3 ELRSIAFSRAVLAEFLATLLFVFFGLGSALNWPQALPS-----VLQIAMAFGLAIGTLVQALGHVSGAHINPAVTVACLVGCHVSFLRAVFYVAAQLLGAVAGAALL 104          
The following BLAST results are available for this feature:
BLAST of CX289173 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
TIP12_ORYSJ2.021e-1236.61Probable aquaporin TIP1-2 OS=Oryza sativa subsp. j... [more]
AQP5_HUMAN2.021e-1238.53Aquaporin-5 OS=Homo sapiens GN=AQP5 PE=1 SV=1[more]
TIP21_ARATH2.640e-1239.22Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1... [more]
MIP_HUMAN3.448e-1240.19Lens fiber major intrinsic protein OS=Homo sapiens... [more]
MIP_CANFA3.448e-1241.12Lens fiber major intrinsic protein OS=Canis famili... [more]
YI7H_SCHPO4.503e-1237.10Uncharacterized membrane protein C977.17 OS=Schizo... [more]
TIP31_ORYSJ4.503e-1236.63Probable aquaporin TIP3-1 OS=Oryza sativa subsp. j... [more]
TIP1_MEDTR4.503e-1232.35Probable aquaporin TIP-type OS=Medicago truncatula... [more]
AQP2_SHEEP5.881e-1240.19Aquaporin-2 OS=Ovis aries GN=AQP2 PE=2 SV=1[more]
AQP2_BOVIN5.881e-1240.19Aquaporin-2 OS=Bos taurus GN=AQP2 PE=2 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC02010A06SK IF1 Citrus clementina cDNA clone C02010A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289173 ID=CX289173; Name=CX289173; organism=Citrus clementina; type=EST; length=613bp
AATGGCACGAGGCATTTATTGATTCAATTCACTCCCAAGAAACTTGAACC
TATCTTGTCTATTAATTTTCACAAGAACATAATGGAGGGCAAAGAAGAGG
ATGTAAGAGTGGGAGCAAATAGGTATCGAGAGAGTCAACCTATTGGAACC
GCGGCTCAGACTCAGGATGTGAAGGATTACACGGAGCCACCTCCGGCGCC
GCTCTTTGAGCCCGGCGAATTATCGTCGTGGTCCTTTTACAGGGCTGGCA
TTGCGGAGTTTGTGGCCACGTTCTTGTTTCTTTACATCACTGTTCTAACA
GTGATGGGCGTGTCCAAATCCAAAAGCAAATGTTCCACTGTGGGAATCCA
GGGCATCGCTTGGGCTTTTGGCGGCATGATCTTCGCTCTAGTCTACTGCA
CTGCTGGCATTTCAGGGGGTCACATTAACCCAGCGGTGACATTCGGGCTG
TTCTTGGCCCGAAAGCTGTCGCTTACCAGGGCAGTTTTTTACATGATAAT
GCAGTGTTTAGGGGCCATATGCGGTGCCGCCGTTGTAAAGGGCTTTCAGA
AAAGCCAATATGAAATGCTAGGCGGCGGTGCCAACATGCTCAGCAAAGGC
TACAGCAAGGGAG
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