CX289224

Overview
NameCX289224
Unique NameCX289224
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length401
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289224 vs. ExPASy Swiss-Prot
Match: PPM1G_HUMAN (Protein phosphatase 1G OS=Homo sapiens GN=PPM1G PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.435e-14
Identity = 39/59 (66.10%), Postives = 47/59 (79.66%), Query Frame = 1
Query:  205 GPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGG 381
            G  SG+TA VA+IR KQL+VANAGDSRCV+S  G+AL++S DHKP+ EVE  RI  AGG
Sbjct:  324 GSDSGTTAVVALIRGKQLIVANAGDSRCVVSEAGKALDMSYDHKPEDEVELARIKNAGG 382          
BLAST of CX289224 vs. ExPASy Swiss-Prot
Match: PPM1G_BOVIN (Protein phosphatase 1G OS=Bos taurus GN=PPM1G PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 1.435e-14
Identity = 39/59 (66.10%), Postives = 47/59 (79.66%), Query Frame = 1
Query:  205 GPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGG 381
            G  SG+TA VA+IR KQL+VANAGDSRCV+S  G+AL++S DHKP+ EVE  RI  AGG
Sbjct:  322 GSDSGTTAVVALIRGKQLIVANAGDSRCVVSEAGKALDMSYDHKPEDEVELARIKNAGG 380          
BLAST of CX289224 vs. ExPASy Swiss-Prot
Match: PP2C1_CAEEL (Probable protein phosphatase 2C F42G9.1 OS=Caenorhabditis elegans GN=F42G9.1 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 2.448e-14
Identity = 46/101 (45.54%), Postives = 64/101 (63.37%), Query Frame = 1
Query:   97 EANDHFDDWASEEYKQHGFLRYLINRLLIGPHSDFHGPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGR 399
            E ++  +D  S+E    G L  L   LL    ++  G  SG+TACV ++   +++VANAGDSR VL R G+A++LS DHKP+ EVE +RI  AGG I+ GR
Sbjct:  279 EDDEDAEDEQSDEEMVDGSLAPL---LLGSGGAEVPGEDSGTTACVCLVGKDKVIVANAGDSRAVLCRNGKAVDLSVDHKPEDEVETNRIHAAGGQIEDGR 376          
BLAST of CX289224 vs. ExPASy Swiss-Prot
Match: P2C42_ORYSJ (Probable protein phosphatase 2C 42 OS=Oryza sativa subsp. japonica GN=Os04g0500900 PE=2 SV=4)

HSP 1 Score: 76.6406 bits (187), Expect = 4.176e-14
Identity = 37/66 (56.06%), Postives = 47/66 (71.21%), Query Frame = 1
Query:  205 GPTS-GSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGR 399
            GP + G TACV +IR+ Q+VV NAGD+RCV+SR GQA+ LS DHKP+   E  RI+ AGG +   R
Sbjct:  146 GPLAEGCTACVVLIRNTQIVVGNAGDARCVISRNGQAIALSNDHKPNFPEETQRIVAAGGSVSFSR 211          
BLAST of CX289224 vs. ExPASy Swiss-Prot
Match: Y0417_DROME (Probable protein phosphatase CG10417 OS=Drosophila melanogaster GN=CG10417 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.030e-13
Identity = 34/59 (57.63%), Postives = 44/59 (74.58%), Query Frame = 1
Query:  205 GPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGG 381
            G  SG TA V +++ + L VANAGDSRCV+SR GQA+ +S DHKP+ + E  RI+KAGG
Sbjct:  389 GKDSGCTAVVCLLQGRDLYVANAGDSRCVISRSGQAIEMSIDHKPEDDEEASRIIKAGG 447          
BLAST of CX289224 vs. ExPASy Swiss-Prot
Match: PP2C6_PARTE (Probable protein phosphatase 2C 6 OS=Paramecium tetraurelia GN=GSPATT00019634001 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.343e-12
Identity = 37/62 (59.68%), Postives = 45/62 (72.58%), Query Frame = 1
Query:  214 SGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGR 399
            +G TA VA+I  K L VANAGDSR  L+R G+  ++SKDHKPD E EK RI +AGGF+  GR
Sbjct:  124 AGCTANVALIVGKTLYVANAGDSRSFLNRDGKPFDMSKDHKPDDEQEKKRIERAGGFVSDGR 185          
BLAST of CX289224 vs. ExPASy Swiss-Prot
Match: PP2C5_PARTE (Probable protein phosphatase 2C 5 OS=Paramecium tetraurelia GN=GSPATT00010582001 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.993e-12
Identity = 36/62 (58.06%), Postives = 45/62 (72.58%), Query Frame = 1
Query:  214 SGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGR 399
            +G TA VA+I  K L VANAGDSR  L+R G+  ++SKDHKPD + EK RI +AGGF+  GR
Sbjct:  124 AGCTANVALIVGKTLYVANAGDSRSFLNRDGKPFDMSKDHKPDDDQEKKRIERAGGFVSDGR 185          
BLAST of CX289224 vs. ExPASy Swiss-Prot
Match: P2C69_ARATH (Probable protein phosphatase 2C 69 OS=Arabidopsis thaliana GN=At5g10740 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.993e-12
Identity = 34/62 (54.84%), Postives = 45/62 (72.58%), Query Frame = 1
Query:  202 HGPTSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFI 387
            H   +GSTA  AI+   +LVVAN GDSR V+SR G+A+ +S+DHKPD   E++RI  AGGF+
Sbjct:  120 HNRDAGSTASTAILVGDRLVVANVGDSRAVISRGGKAIAVSRDHKPDQSDERERIENAGGFV 181          
BLAST of CX289224 vs. ExPASy Swiss-Prot
Match: P2C47_ARATH (Probable protein phosphatase 2C 47 OS=Arabidopsis thaliana GN=At3g51470 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.908e-12
Identity = 34/62 (54.84%), Postives = 46/62 (74.19%), Query Frame = 1
Query:  211 TSGSTACVAIIRDKQLVVANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVG 396
            +SG+TA  A+I DK +++ANAGDSR VL ++G+A+ LSKDHKP+   E+ RI K GG I  G
Sbjct:  164 SSGTTALTALILDKTMLIANAGDSRAVLGKRGRAIELSKDHKPNCTSERLRIEKLGGVIYDG 225          
BLAST of CX289224 vs. ExPASy Swiss-Prot
Match: PP2C2_SCHPO (Protein phosphatase 2C homolog 2 OS=Schizosaccharomyces pombe GN=ptc2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.105e-12
Identity = 40/69 (57.97%), Postives = 45/69 (65.22%), Query Frame = 1
Query:  196 DFHGPTSGSTACVAIIRDKQLVV-ANAGDSRCVLSRKGQALNLSKDHKPDLEVEKDRILKAGGFIQVGR 399
            D     SG TA  A+I D Q++  ANAGDSR VL RKG A  LS DHKP+ +VEK RI  AGGFI  GR
Sbjct:  113 DMQEDPSGCTATTALIVDHQVIYCANAGDSRTVLGRKGTAEPLSFDHKPNNDVEKARITAAGGFIDFGR 181          
The following BLAST results are available for this feature:
BLAST of CX289224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
PPM1G_HUMAN1.435e-1466.10Protein phosphatase 1G OS=Homo sapiens GN=PPM1G PE... [more]
PPM1G_BOVIN1.435e-1466.10Protein phosphatase 1G OS=Bos taurus GN=PPM1G PE=2... [more]
PP2C1_CAEEL2.448e-1445.54Probable protein phosphatase 2C F42G9.1 OS=Caenorh... [more]
P2C42_ORYSJ4.176e-1456.06Probable protein phosphatase 2C 42 OS=Oryza sativa... [more]
Y0417_DROME6.030e-1357.63Probable protein phosphatase CG10417 OS=Drosophila... [more]
PP2C6_PARTE1.343e-1259.68Probable protein phosphatase 2C 6 OS=Paramecium te... [more]
PP2C5_PARTE2.993e-1258.06Probable protein phosphatase 2C 5 OS=Paramecium te... [more]
P2C69_ARATH2.993e-1254.84Probable protein phosphatase 2C 69 OS=Arabidopsis ... [more]
P2C47_ARATH3.908e-1254.84Probable protein phosphatase 2C 47 OS=Arabidopsis ... [more]
PP2C2_SCHPO5.105e-1257.97Protein phosphatase 2C homolog 2 OS=Schizosaccharo... [more]

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Properties
Property NameValue
Genbank descriptionC02010F01SK IF1 Citrus clementina cDNA clone C02010F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289224 ID=CX289224; Name=CX289224; organism=Citrus clementina; type=EST; length=401bp
GGACAAAGGGGATGGAGAGAATTAGCTATACTGGGAGATAAAATGGACAA
GTTTTCTGGCATGATTGAGGGGTTCATATGGTCTCCTAAGGGTGGTGAAG
CCAATGATCATTTTGACGATTGGGCATCGGAGGAGTACAAGCAACATGGC
TTTCTGCGGTATCTTATCAACAGACTTTTGATTGGTCCTCACTCAGATTT
TCATGGACCAACTTCTGGAAGTACAGCTTGCGTAGCAATCATTAGAGACA
AGCAACTCGTGGTTGCAAATGCTGGTGATTCTCGTTGTGTGTTATCGAGG
AAGGGCCAGGCACTTAATCTATCTAAAGACCATAAGCCTGATCTTGAGGT
TGAGAAAGATAGAATTCTCAAAGCTGGTGGTTTTATACAAGTTGGACGTG
T
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