CX289240

Overview
NameCX289240
Unique NameCX289240
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length452
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289240 vs. ExPASy Swiss-Prot
Match: RLP24_YEAST (Ribosome biogenesis protein RLP24 OS=Saccharomyces cerevisiae GN=RLP24 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.096e-11
Identity = 33/90 (36.67%), Postives = 50/90 (55.56%), Query Frame = 2
Query:   41 CKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVK--KKRRATKKPYSRSIVGATLEVIQK 304
            C F  +  YPG GI F+R+D++ F F  SKC + F  R  P KL WT  +RK   K++A ++     +RR     Y+R +V  TL+ + +
Sbjct:    6 CHFCSSPCYPGHGIMFVRNDAKEFRFCRSKCHKAFKQRRNPRKLKWTKAFRKAAGKELAVDSTLTFAQRRNVPVRYNRELVATTLKAMAR 95          
BLAST of CX289240 vs. ExPASy Swiss-Prot
Match: RLP24_PONAB (Probable ribosome biogenesis protein RLP24 OS=Pongo abelii GN=RSL24D1 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.163e-11
Identity = 37/106 (34.91%), Postives = 55/106 (51.89%), Query Frame = 2
Query:   26 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAE--AVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDA 337
            ++ E C F    IYPG G+ F+R+D +VF F  SKC + F  R  P K+ WT  +RK   K++  +     +KRR     Y R +   T++ + KR  E  + R A
Sbjct:    1 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKRRNPRKVRWTKAFRKAAGKELTVDNSFEFEKRRNEPIKYQRELWNKTIDAM-KRVEEIKQKRQA 105          
BLAST of CX289240 vs. ExPASy Swiss-Prot
Match: RLP24_RAT (Probable ribosome biogenesis protein RLP24 OS=Rattus norvegicus GN=Rsl24d1 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.102e-11
Identity = 35/108 (32.41%), Postives = 57/108 (52.78%), Query Frame = 2
Query:   26 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAE--AVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAR 343
            ++ E C F    IYPG G+ F+R+D +VF F  SKC + F  +  P K+ WT  +RK   K++  +     +KRR     Y R +   T++ +  +R E+ + R  A+
Sbjct:    1 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAGKELTVDNSFEFEKRRNEPVKYQRELWNKTIDAM--KRVEEIKQRRQAK 106          
BLAST of CX289240 vs. ExPASy Swiss-Prot
Match: RLP24_MOUSE (Probable ribosome biogenesis protein RLP24 OS=Mus musculus GN=Rsl24d1 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.102e-11
Identity = 36/106 (33.96%), Postives = 55/106 (51.89%), Query Frame = 2
Query:   26 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAE--AVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDA 337
            ++ E C F    IYPG G+ F+R+D +VF F  SKC + F  +  P K+ WT  +RK   K++  +     +KRR     Y R +   T++ + KR  E  + R A
Sbjct:    1 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAGKELTVDNSFEFEKRRNEPVKYQRELWNKTIDAM-KRVEEIKQKRQA 105          
BLAST of CX289240 vs. ExPASy Swiss-Prot
Match: RLP24_BOVIN (Probable ribosome biogenesis protein RLP24 OS=Bos taurus GN=RSL24D1 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.102e-11
Identity = 36/106 (33.96%), Postives = 55/106 (51.89%), Query Frame = 2
Query:   26 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAE--AVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDA 337
            ++ E C F    IYPG G+ F+R+D +VF F  SKC + F  +  P K+ WT  +RK   K++  +     +KRR     Y R +   T++ + KR  E  + R A
Sbjct:    1 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAGKELTVDNSFEFEKRRNEPVKYQRELWNKTIDAM-KRVEEIKQKRQA 105          
BLAST of CX289240 vs. ExPASy Swiss-Prot
Match: RLP24_HUMAN (Probable ribosome biogenesis protein RLP24 OS=Homo sapiens GN=RSL24D1 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.275e-11
Identity = 36/106 (33.96%), Postives = 55/106 (51.89%), Query Frame = 2
Query:   26 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAE--AVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDA 337
            ++ E C F    IYPG G+ F+R+D +VF F  SKC + F  +  P K+ WT  +RK   K++  +     +KRR     Y R +   T++ + KR  E  + R A
Sbjct:    1 MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAGKELTVDNSFEFEKRRNEPIKYQRELWNKTIDAM-KRVEEIKQKRQA 105          
The following BLAST results are available for this feature:
BLAST of CX289240 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
RLP24_YEAST1.096e-1136.67Ribosome biogenesis protein RLP24 OS=Saccharomyces... [more]
RLP24_PONAB4.163e-1134.91Probable ribosome biogenesis protein RLP24 OS=Pong... [more]
RLP24_RAT7.102e-1132.41Probable ribosome biogenesis protein RLP24 OS=Ratt... [more]
RLP24_MOUSE7.102e-1133.96Probable ribosome biogenesis protein RLP24 OS=Mus ... [more]
RLP24_BOVIN7.102e-1133.96Probable ribosome biogenesis protein RLP24 OS=Bos ... [more]
RLP24_HUMAN9.275e-1133.96Probable ribosome biogenesis protein RLP24 OS=Homo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02010G06SK IF1 Citrus clementina cDNA clone C02010G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289240 ID=CX289240; Name=CX289240; organism=Citrus clementina; type=EST; length=452bp
AGCAACACCATCAGAAACCATGGTTCTCAAGACTGAACTTTGCAAATTCA
GCGGTGCCAAGATATACCCTGGTAAGGGTATCAGATTTATTCGTTCAGAC
TCTCAGGTTTTCCTCTTTGCCAATTCTAAATGCAAGAGGTACTTCCACAA
CCGATTGAAGCCATCGAAGCTTACATGGACAGCCATGTACAGGAAACAGC
ACAAGAAGGACATTGCTGCTGAGGCAGTTAAGAAGAAGCGTCGTGCCACT
AAGAAGCCCTATTCAAGATCTATAGTTGGTGCCACCTTGGAAGTTATCCA
GAAGAGAAGAACTGAGAAGCCAGAAGTCCGAGATGCTGCACGGGAGGCTG
CACTTCGTGAAATTAAGGAGAGGATCAAGAAGACTAAGGATGAAAAGAAG
GCAAAGAAAGCGGAGACGATGTCCAAGTCACAGAAGTCTCAAGTCAAAAG
TA
back to top