CX289268

Overview
NameCX289268
Unique NameCX289268
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length608
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX289268 vs. ExPASy Swiss-Prot
Match: GALE_STRMU (UDP-glucose 4-epimerase OS=Streptococcus mutans GN=galE PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 4.945e-11
Identity = 51/178 (28.65%), Postives = 82/178 (46.07%), Query Frame = 2 
Query:    2 GFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLI--------EVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGAR-ILLTSTSEVYGDPLVHPQDESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPR 508
            G+IGSH+VD+L+E  + EV+VVD+  TG +  +     HP  +  + D+ +   +        +VD + H A  +        P+K    N  G + +L +    G + I+ +ST+  YG P     DE       P    + Y E K + ET+M    R +GI+    R FN  G +
Sbjct:   10 GYIGSHMVDRLIEKGEEEVVVVDSLVTGHRAAV-----HPAAKFYQGDLADREFMSMVFRENPDVDAVIHFAAYSLVAESMKKPLKYFDNNTAGMIKLLEVMSEFGVKYIVFSSTAATYGIP-----DEIPIKETTPQRPINPYGESKLMMETIMKWSDRAYGIKFVPLRYFNVAGAK 177
The following BLAST results are available for this feature:
BLAST of CX289268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
GALE_STRMU4.945e-1128.65UDP-glucose 4-epimerase OS=Streptococcus mutans GN... [more]

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Properties
Property NameValue
Genbank descriptionC02011A11SK IF1 Citrus clementina cDNA clone C02011A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289268 ID=CX289268; Name=CX289268; organism=Citrus clementina; type=EST; length=608bp
TGGATTTATCGGCTCTCACCTTGTGGACAAGTTGATGGAAAATGAAAAGA
ACGAGGTGATTGTAGTTGATAACTACTTCACTGGCTCAAAGGATAACCTA
AGGAAATGGATTGGTCACCCAAGATTTGAGCTTATTCGTCATGATGTGAC
TGAGCCATTGTTGATCGAGGTTGATCAAATTTATCACCTTGCTTGTCCTG
CCTCCCCAATCTTCTACAAATACAACCCTGTAAAGACTATAAAGACAAAT
GTGATTGGTACATTGAACATGCTGGGGCTTGCCAAGCGAGTCGGAGCTAG
GATTTTGCTTACATCAACTTCAGAGGTTTACGGAGATCCTCTTGTGCATC
CCCAGGATGAGAGCTATTGGGGAAATGTGAACCCAATTGGAGTCAGGAGT
TGCTATGATGAGGGAAAAAGAGTTGCAGAAACTTTGATGTTTGACTACCA
TCGGCAGCATGGGATTGAGATAAGGATTGCTAGGATTTTCAACACCTATG
GACCCCGCATGAATATTGATGATGGTCGTGTTGTCAGCAATTTTATTGCT
CAAGCAATCCGTGGCGAACCCTTGACTGTTCAAGCTCCTGGAACACAAAC
TCGTAGTT
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