CX289270

Overview
NameCX289270
Unique NameCX289270
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length600
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289270 vs. ExPASy Swiss-Prot
Match: KSG10_ARATH (Shaggy-related protein kinase kappa OS=Arabidopsis thaliana GN=ASK10 PE=1 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 2.151e-43
Identity = 88/152 (57.89%), Postives = 114/152 (75.00%), Query Frame = 1
Query:  145 MASTSLEPVASTSEAATVARTERSGFDQLPKEMNEMRIRDEKNVNHDDKDLEPSIVNGNGTEAGQVIATTVGGRNGQPKQTISYMAERVVGTGSFGVVFQAKCLETGDSVAIKKVLQDKRYKNRELQIMRLLNHPNVVSLKHCFFSTTEKDE 600
            MAS+ L     TS +A   ++  S  D L +++ E RIRD+   + D++D EP I++G G E G VI TT+ GRNGQ +QT+SY++E VVGTGSFG+VFQAKC ETG+ VAIKKVLQDKRYKNRELQIM++L+HPN V+LKH FFS T+ +E
Sbjct:    1 MASSGLGNGVGTSRSAKGLKSSSSSVDWLTRDLAETRIRDKVETD-DERDSEPDIIDGAGAEPGHVIRTTLRGRNGQSRQTVSYISEHVVGTGSFGMVFQAKCRETGEVVAIKKVLQDKRYKNRELQIMQMLDHPNAVALKHSFFSRTDNEE 151          
BLAST of CX289270 vs. ExPASy Swiss-Prot
Match: KSG7_ARATH (Shaggy-related protein kinase eta OS=Arabidopsis thaliana GN=ASK7 PE=1 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 6.259e-43
Identity = 78/106 (73.58%), Postives = 97/106 (91.51%), Query Frame = 1
Query:  283 DDKDLEPSIVNGNGTEAGQVIATTVGGRNGQPKQTISYMAERVVGTGSFGVVFQAKCLETGDSVAIKKVLQDKRYKNRELQIMRLLNHPNVVSLKHCFFSTTEKDE 600
            DDK++  ++V+G+    G +I+TT+GG+NG+PKQTISYMAERVVGTGSFG+VFQAKCLETG++VAIKKVLQD+RYKNRELQ+MR+++HPNVV LKHCFFSTT KDE
Sbjct:    3 DDKEMPAAVVDGHDQVTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGETVAIKKVLQDRRYKNRELQLMRVMDHPNVVCLKHCFFSTTSKDE 108          
BLAST of CX289270 vs. ExPASy Swiss-Prot
Match: KSG9_ARATH (Shaggy-related protein kinase iota OS=Arabidopsis thaliana GN=ASK9 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 8.174e-43
Identity = 77/105 (73.33%), Postives = 95/105 (90.48%), Query Frame = 1
Query:  286 DKDLEPSIVNGNGTEAGQVIATTVGGRNGQPKQTISYMAERVVGTGSFGVVFQAKCLETGDSVAIKKVLQDKRYKNRELQIMRLLNHPNVVSLKHCFFSTTEKDE 600
            DK++  +++ GN    G +I+TT+GG+NG+PKQTISYMAERVVGTGSFG+VFQAKCLETG+SVAIKKVLQD+RYKNRELQ+MR ++HPNV+SLKHCFFSTT +DE
Sbjct:   34 DKEMSAAVIEGNDAVTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGESVAIKKVLQDRRYKNRELQLMRPMDHPNVISLKHCFFSTTSRDE 138          
BLAST of CX289270 vs. ExPASy Swiss-Prot
Match: KSG4_ARATH (Shaggy-related protein kinase delta OS=Arabidopsis thaliana GN=ASK4 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.378e-42
Identity = 85/141 (60.28%), Postives = 109/141 (77.30%), Query Frame = 1
Query:  178 TSEAATVARTERSGFDQLPKEMNEMRIRDEKNVNHDDKDLEPSIVNGNGTEAGQVIATTVGGRNGQPKQTISYMAERVVGTGSFGVVFQAKCLETGDSVAIKKVLQDKRYKNRELQIMRLLNHPNVVSLKHCFFSTTEKDE 600
            +S +A   +   S  D L ++M EM+IRD+   + +++D EP I++G G E G VI TT+ GRNGQ +QT+SY+AE VVGTGSFG+VFQAKC ETG+ VAIKKVLQDKRYKNRELQIM++L+HPNVV LKH F+S TE +E
Sbjct:   11 SSRSAKNTKNTSSSVDWLSRDMLEMKIRDKTEAD-EERDSEPDIIDGVGAEPGHVITTTLPGRNGQSRQTVSYIAEHVVGTGSFGMVFQAKCRETGEVVAIKKVLQDKRYKNRELQIMQMLDHPNVVCLKHSFYSRTENEE 150          
BLAST of CX289270 vs. ExPASy Swiss-Prot
Match: KSG2_ARATH (Shaggy-related protein kinase beta OS=Arabidopsis thaliana GN=ASK2 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 9.352e-39
Identity = 88/147 (59.86%), Postives = 104/147 (70.75%), Query Frame = 1
Query:  163 EPVASTS-EAATVARTERSGFDQLPKEMNEMRIRDEKNVNHDDKDLEPSIVNGNGTEAGQVIATTVGGRNGQPKQTISYMAERVVGTGSFGVVFQAKCLETGDSVAIKKVLQDKRYKNRELQIMRLLNHPNVVSLKHCFFSTTEKDE 600
            E   +TS E  +V+ +E S  D LPKE+ E              D++  I+ GNGTE+G++I T   G N Q  +TISY AE V+GTGSFGVVFQAKCLET + VAIKKVLQDKRYKNRELQIMR+L+HPNVV LKH FFSTTEKDE
Sbjct:   40 ESTETTSYEKDSVSSSENS--DHLPKEIRE--------------DMDCGIIKGNGTESGRIITTKKKGLNDQKDKTISYRAEHVIGTGSFGVVFQAKCLETEEKVAIKKVLQDKRYKNRELQIMRMLDHPNVVELKHSFFSTTEKDE 170          
BLAST of CX289270 vs. ExPASy Swiss-Prot
Match: GSK3_CAEEL (Glycogen synthase kinase-3 OS=Caenorhabditis elegans GN=gsk-3 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.364e-20
Identity = 52/95 (54.74%), Postives = 68/95 (71.58%), Query Frame = 1
Query:  319 NGTEAGQVIATTVGGRNGQPKQT-ISYMAERVVGTGSFGVVFQAKCLETGDSVAIKKVLQDKRYKNRELQIMRLLNHPNVVSLKHCFFSTTEKDE 600
            +G +   V+A+     +G  +Q  ISY  ++V+G GSFGVVF AK   T + VAIKKVLQDKR+KNRELQIMR LNHPN+V LK+ F+S+ EK +
Sbjct:   12 SGKQVTMVVASVA--TDGVDQQVEISYYDQKVIGNGSFGVVFLAKLSTTNEMVAIKKVLQDKRFKNRELQIMRKLNHPNIVKLKYFFYSSGEKKD 104          
BLAST of CX289270 vs. ExPASy Swiss-Prot
Match: SGG_DROME (Protein kinase shaggy OS=Drosophila melanogaster GN=sgg PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 5.700e-20
Identity = 51/97 (52.58%), Postives = 69/97 (71.13%), Query Frame = 1
Query:  304 SIVNGNGTEAGQVIATTVGGRNGQPKQTISYMAERVVGTGSFGVVFQAKCLETGDSVAIKKVLQDKRYKNRELQIMRLLNHPNVVSLKHCFFSTTEK 594
            +I+  +G++   V+AT   G+     Q +SY   +V+G GSFGVVFQAK  +TG+ VAIKKVLQD+R+KNRELQIMR L H N+V L + F+S+ EK
Sbjct:  579 NILGRDGSKITTVVATP--GQGTDRVQEVSYTDTKVIGNGSFGVVFQAKLCDTGELVAIKKVLQDRRFKNRELQIMRKLEHCNIVKLLYFFYSSGEK 673          
BLAST of CX289270 vs. ExPASy Swiss-Prot
Match: GSK3B_SPECI (Glycogen synthase kinase-3 beta OS=Spermophilus citellus GN=GSK3B PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.445e-20
Identity = 49/94 (52.13%), Postives = 69/94 (73.40%), Query Frame = 1
Query:  319 NGTEAGQVIATTVGGRNGQPKQTISYMAERVVGTGSFGVVFQAKCLETGDSVAIKKVLQDKRYKNRELQIMRLLNHPNVVSLKHCFFSTTEKDE 600
            +G++   V+AT   G+     Q +SY   +V+G GSFGVV+QAK  ++G+ VAIKKVLQDKR+KNRELQIMR L+H N+V L++ F+S+ EK +
Sbjct:   33 DGSKVTTVVATP--GQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKD 124          
BLAST of CX289270 vs. ExPASy Swiss-Prot
Match: GSK3B_RAT (Glycogen synthase kinase-3 beta OS=Rattus norvegicus GN=Gsk3b PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.445e-20
Identity = 49/94 (52.13%), Postives = 69/94 (73.40%), Query Frame = 1
Query:  319 NGTEAGQVIATTVGGRNGQPKQTISYMAERVVGTGSFGVVFQAKCLETGDSVAIKKVLQDKRYKNRELQIMRLLNHPNVVSLKHCFFSTTEKDE 600
            +G++   V+AT   G+     Q +SY   +V+G GSFGVV+QAK  ++G+ VAIKKVLQDKR+KNRELQIMR L+H N+V L++ F+S+ EK +
Sbjct:   33 DGSKVTTVVATP--GQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKD 124          
BLAST of CX289270 vs. ExPASy Swiss-Prot
Match: GSK3B_MOUSE (Glycogen synthase kinase-3 beta OS=Mus musculus GN=Gsk3b PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 7.445e-20
Identity = 49/94 (52.13%), Postives = 69/94 (73.40%), Query Frame = 1
Query:  319 NGTEAGQVIATTVGGRNGQPKQTISYMAERVVGTGSFGVVFQAKCLETGDSVAIKKVLQDKRYKNRELQIMRLLNHPNVVSLKHCFFSTTEKDE 600
            +G++   V+AT   G+     Q +SY   +V+G GSFGVV+QAK  ++G+ VAIKKVLQDKR+KNRELQIMR L+H N+V L++ F+S+ EK +
Sbjct:   33 DGSKVTTVVATP--GQGPDRPQEVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKD 124          
The following BLAST results are available for this feature:
BLAST of CX289270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
KSG10_ARATH2.151e-4357.89Shaggy-related protein kinase kappa OS=Arabidopsis... [more]
KSG7_ARATH6.259e-4373.58Shaggy-related protein kinase eta OS=Arabidopsis t... [more]
KSG9_ARATH8.174e-4373.33Shaggy-related protein kinase iota OS=Arabidopsis ... [more]
KSG4_ARATH2.378e-4260.28Shaggy-related protein kinase delta OS=Arabidopsis... [more]
KSG2_ARATH9.352e-3959.86Shaggy-related protein kinase beta OS=Arabidopsis ... [more]
GSK3_CAEEL4.364e-2054.74Glycogen synthase kinase-3 OS=Caenorhabditis elega... [more]
SGG_DROME5.700e-2052.58Protein kinase shaggy OS=Drosophila melanogaster G... [more]
GSK3B_SPECI7.445e-2052.13Glycogen synthase kinase-3 beta OS=Spermophilus ci... [more]
GSK3B_RAT7.445e-2052.13Glycogen synthase kinase-3 beta OS=Rattus norvegic... [more]
GSK3B_MOUSE7.445e-2052.13Glycogen synthase kinase-3 beta OS=Mus musculus GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02011B01SK IF1 Citrus clementina cDNA clone C02011B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289270 ID=CX289270; Name=CX289270; organism=Citrus clementina; type=EST; length=600bp
AAGAGCATTGCTTCTGGTCGCACTTCTATTTCTTCTGATCCGGGTGGAGA
TTCTGGCATAAAGAGGGCAAAGGTCGATAAAGAATTAGAGGTAAATGGGG
AAGCAAATTTGGTTGAAAGAAGTGCCTCCAGTCTAGAGCAGCATATGGCT
TCTACATCTCTGGAGCCTGTTGCAAGCACGTCCGAAGCAGCCACAGTTGC
TAGAACTGAAAGATCAGGTTTTGATCAACTGCCTAAGGAAATGAATGAGA
TGAGAATAAGAGATGAAAAAAATGTTAACCATGATGATAAGGATTTGGAA
CCCTCAATTGTCAATGGCAATGGAACAGAAGCAGGTCAAGTCATTGCTAC
TACAGTAGGTGGTCGAAATGGACAACCAAAGCAGACAATCTCCTATATGG
CAGAACGTGTGGTGGGGACTGGTTCCTTTGGTGTTGTCTTCCAAGCTAAG
TGCCTTGAAACAGGGGACTCTGTTGCAATAAAGAAGGTGCTCCAGGATAA
GAGATACAAGAATAGGGAACTCCAAATTATGCGTTTACTTAACCATCCTA
ATGTTGTTTCTCTGAAACATTGTTTCTTTTCAACTACTGAGAAAGATGAG
back to top