CX289318

Overview
NameCX289318
Unique NameCX289318
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length586
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289318 vs. ExPASy Swiss-Prot
Match: EF1B_ARTSA (Elongation factor 1-beta OS=Artemia salina PE=1 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 3.942e-15
Identity = 34/54 (62.96%), Postives = 45/54 (83.33%), Query Frame = 3
Query:  423 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIID 584
            V+LD+KPWDDETDM ++E+ VRSV+M GL WGA+KL+P+ YGIKK+ IM  + D
Sbjct:  124 VILDIKPWDDETDMAEMEKLVRSVQMDGLVWGAAKLIPLAYGIKKLSIMCVVED 177          
BLAST of CX289318 vs. ExPASy Swiss-Prot
Match: EF1D_ARTSA (Elongation factor 1-delta OS=Artemia salina PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.498e-14
Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = 3
Query:  423 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIID 584
            +LLD+KPWDDETDM  +E  VRS+ M GL WGASKLVPV +G+KK+QI   + D
Sbjct:  154 ILLDIKPWDDETDMGAMEREVRSIAMDGLIWGASKLVPVAFGVKKLQISCVVED 207          
BLAST of CX289318 vs. ExPASy Swiss-Prot
Match: EF1B_SCHPO (Elongation factor 1-beta OS=Schizosaccharomyces pombe GN=tef5 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.957e-14
Identity = 35/54 (64.81%), Postives = 43/54 (79.63%), Query Frame = 3
Query:  423 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIID 584
            V LDVKPWDDET M +LE+AVRS++M GL WG SKLVPVG+G+ K QI + + D
Sbjct:  131 VTLDVKPWDDETPMDELEKAVRSIQMDGLVWGLSKLVPVGFGVNKFQINLVVED 184          
BLAST of CX289318 vs. ExPASy Swiss-Prot
Match: EF1B_CANAL (Elongation factor 1-beta OS=Candida albicans GN=EFB1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.124e-12
Identity = 31/54 (57.41%), Postives = 42/54 (77.78%), Query Frame = 3
Query:  423 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIID 584
            V LDVKPWDDETD+ +L   V+++EM GL WGA + +PVG+GIKK+QI + + D
Sbjct:  130 VTLDVKPWDDETDLDELLTNVKAIEMEGLTWGAHQWIPVGFGIKKLQINLVVED 183          
BLAST of CX289318 vs. ExPASy Swiss-Prot
Match: EF1D_DROME (Probable elongation factor 1-delta OS=Drosophila melanogaster GN=eEF1delta PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.080e-12
Identity = 29/54 (53.70%), Postives = 39/54 (72.22%), Query Frame = 3
Query:  423 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIID 584
            ++LDVKPWDDETD+K +E  +R +   GL WGASK VPV +GI+K+ I   + D
Sbjct:  173 IILDVKPWDDETDLKVMETEIRKITQDGLLWGASKFVPVAFGIQKLSISCVVED 226          
BLAST of CX289318 vs. ExPASy Swiss-Prot
Match: EF1B_YEAST (Elongation factor 1-beta OS=Saccharomyces cerevisiae GN=EFB1 PE=1 SV=4)

HSP 1 Score: 69.3218 bits (168), Expect = 1.550e-11
Identity = 28/54 (51.85%), Postives = 42/54 (77.78%), Query Frame = 3
Query:  423 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIID 584
            V LDVKPWDDET+++++   V+++EM GL WGA + +P+G+GIKK+QI   + D
Sbjct:  123 VTLDVKPWDDETNLEEMVANVKAIEMEGLTWGAHQFIPIGFGIKKLQINCVVED 176          
The following BLAST results are available for this feature:
BLAST of CX289318 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
EF1B_ARTSA3.942e-1562.96Elongation factor 1-beta OS=Artemia salina PE=1 SV... [more]
EF1D_ARTSA1.498e-1462.96Elongation factor 1-delta OS=Artemia salina PE=1 S... [more]
EF1B_SCHPO1.957e-1464.81Elongation factor 1-beta OS=Schizosaccharomyces po... [more]
EF1B_CANAL3.124e-1257.41Elongation factor 1-beta OS=Candida albicans GN=EF... [more]
EF1D_DROME4.080e-1253.70Probable elongation factor 1-delta OS=Drosophila m... [more]
EF1B_YEAST1.550e-1151.85Elongation factor 1-beta OS=Saccharomyces cerevisi... [more]

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Properties
Property NameValue
Genbank descriptionC02011F06SK IF1 Citrus clementina cDNA clone C02011F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289318 ID=CX289318; Name=CX289318; organism=Citrus clementina; type=EST; length=586bp
TGAAGACTAAAATGGCCATCACCTTTTCAGATCTCCACACAGAGTCAGGC
CTTAAGTCTCTCGATCAGTATCTTTCTGGGAAATCTTATATCTCCGGTGA
TCAACTGACAAAAGATGACATCAAGGTCTACGCTGCCGTTTTGAAGAAAC
CTGCCGGTTCTTTCCCCAACGCCAGCAGGTGGTACGACAGCGTTTCTTCA
CATATCGCCCCAAGCTTCCCTGGCAAAGCCGTTGGTGTGAGAGTTGATGG
CAAAGGTGCTCCAGTTGACGCCGCCCCAGCCAAGCCTGCTGCTGCTGGAG
GTGGTGATGATGATGATTTGGATCTCTTCGGAGATGAGACTGAGGAGGAT
AAGAAAGCAGCAGAGGAGAGGGAGGCTGCTAAAAAGCAATCATCCAAGAA
GAAAGAGAGTGGAAAATCATCGGTACTTTTGGATGTAAAGCCTTGGGATG
ACGAGACAGACATGAAAAAGCTAGAAGAGGCAGTTAGGAGTGTTGAGATG
CCGGGTCTCTTTTGGGGAGCATCAAAATTGGTCCCAGTCGGTTATGGGAT
TAAGAAGATGCAGATCATGATGACAATCATTGATGA
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