CX289320 | Citrus Genome Database

Overview


Name	CX289320
Unique Name	CX289320
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	430

Libraries


Library Name	Type
IF1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of CX289320 vs. ExPASy Swiss-Prot
Match: UBIQ_LUPAL (Ubiquitin OS=Lupinus albus PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.567e-35
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 3

Query:   48 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFTGKQLEDGRTLADYNIQKESTLHLVLRVRGG 275
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF GKQLEDGRTLADYNIQKESTLHLVLR+RGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 95.9005 bits (237), Expect = 7.067e-20
Identity = 48/51 (94.12%), Postives = 48/51 (94.12%), Query Frame = 3

Query:  276 MQIFVKTLTGKTITLEVESSDTIDNVKANIQDKEGIPPDQHRLIFAGKHLE 428
            MQIFVKTLTGKTITLEVESSDTIDNVKA IQDKEGIPPDQ RLIFAGK LE
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 51

BLAST of CX289320 vs. ExPASy Swiss-Prot
Match: UBIQ_LINUS (Ubiquitin OS=Linum usitatissimum PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.567e-35
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 3

Query:   48 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFTGKQLEDGRTLADYNIQKESTLHLVLRVRGG 275
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF GKQLEDGRTLADYNIQKESTLHLVLR+RGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 95.9005 bits (237), Expect = 7.067e-20
Identity = 48/51 (94.12%), Postives = 48/51 (94.12%), Query Frame = 3

Query:  276 MQIFVKTLTGKTITLEVESSDTIDNVKANIQDKEGIPPDQHRLIFAGKHLE 428
            MQIFVKTLTGKTITLEVESSDTIDNVKA IQDKEGIPPDQ RLIFAGK LE
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 51

BLAST of CX289320 vs. ExPASy Swiss-Prot
Match: UBIQ_HORVU (Ubiquitin OS=Hordeum vulgare GN=MUB1 PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.567e-35
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 3

Query:   48 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFTGKQLEDGRTLADYNIQKESTLHLVLRVRGG 275
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF GKQLEDGRTLADYNIQKESTLHLVLR+RGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 95.9005 bits (237), Expect = 7.067e-20
Identity = 48/51 (94.12%), Postives = 48/51 (94.12%), Query Frame = 3

Query:  276 MQIFVKTLTGKTITLEVESSDTIDNVKANIQDKEGIPPDQHRLIFAGKHLE 428
            MQIFVKTLTGKTITLEVESSDTIDNVKA IQDKEGIPPDQ RLIFAGK LE
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 51

BLAST of CX289320 vs. ExPASy Swiss-Prot
Match: UBIQ_HELAN (Ubiquitin OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.567e-35
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 3

Query:   48 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFTGKQLEDGRTLADYNIQKESTLHLVLRVRGG 275
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF GKQLEDGRTLADYNIQKESTLHLVLR+RGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 95.9005 bits (237), Expect = 7.067e-20
Identity = 48/51 (94.12%), Postives = 48/51 (94.12%), Query Frame = 3

Query:  276 MQIFVKTLTGKTITLEVESSDTIDNVKANIQDKEGIPPDQHRLIFAGKHLE 428
            MQIFVKTLTGKTITLEVESSDTIDNVKA IQDKEGIPPDQ RLIFAGK LE
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 51

BLAST of CX289320 vs. ExPASy Swiss-Prot
Match: UBIQ_DESAN (Ubiquitin OS=Deschampsia antarctica PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.567e-35
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 3

Query:   48 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFTGKQLEDGRTLADYNIQKESTLHLVLRVRGG 275
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF GKQLEDGRTLADYNIQKESTLHLVLR+RGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 95.9005 bits (237), Expect = 7.067e-20
Identity = 48/51 (94.12%), Postives = 48/51 (94.12%), Query Frame = 3

Query:  276 MQIFVKTLTGKTITLEVESSDTIDNVKANIQDKEGIPPDQHRLIFAGKHLE 428
            MQIFVKTLTGKTITLEVESSDTIDNVKA IQDKEGIPPDQ RLIFAGK LE
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 51

BLAST of CX289320 vs. ExPASy Swiss-Prot
Match: UBIQ_DAUCA (Ubiquitin OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.567e-35
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 3

Query:   48 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFTGKQLEDGRTLADYNIQKESTLHLVLRVRGG 275
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF GKQLEDGRTLADYNIQKESTLHLVLR+RGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 95.9005 bits (237), Expect = 7.067e-20
Identity = 48/51 (94.12%), Postives = 48/51 (94.12%), Query Frame = 3

Query:  276 MQIFVKTLTGKTITLEVESSDTIDNVKANIQDKEGIPPDQHRLIFAGKHLE 428
            MQIFVKTLTGKTITLEVESSDTIDNVKA IQDKEGIPPDQ RLIFAGK LE
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 51

BLAST of CX289320 vs. ExPASy Swiss-Prot
Match: UBIQ_BRARA (Ubiquitin OS=Brassica rapa PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.567e-35
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 3

Query:   48 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFTGKQLEDGRTLADYNIQKESTLHLVLRVRGG 275
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF GKQLEDGRTLADYNIQKESTLHLVLR+RGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 95.9005 bits (237), Expect = 7.067e-20
Identity = 48/51 (94.12%), Postives = 48/51 (94.12%), Query Frame = 3

Query:  276 MQIFVKTLTGKTITLEVESSDTIDNVKANIQDKEGIPPDQHRLIFAGKHLE 428
            MQIFVKTLTGKTITLEVESSDTIDNVKA IQDKEGIPPDQ RLIFAGK LE
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 51

BLAST of CX289320 vs. ExPASy Swiss-Prot
Match: UBIQ_AVESA (Ubiquitin OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.567e-35
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 3

Query:   48 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFTGKQLEDGRTLADYNIQKESTLHLVLRVRGG 275
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF GKQLEDGRTLADYNIQKESTLHLVLR+RGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 95.9005 bits (237), Expect = 7.067e-20
Identity = 48/51 (94.12%), Postives = 48/51 (94.12%), Query Frame = 3

Query:  276 MQIFVKTLTGKTITLEVESSDTIDNVKANIQDKEGIPPDQHRLIFAGKHLE 428
            MQIFVKTLTGKTITLEVESSDTIDNVKA IQDKEGIPPDQ RLIFAGK LE
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 51

BLAST of CX289320 vs. ExPASy Swiss-Prot
Match: UBIQ_AVEFA (Ubiquitin OS=Avena fatua PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.567e-35
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 3

Query:   48 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFTGKQLEDGRTLADYNIQKESTLHLVLRVRGG 275
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF GKQLEDGRTLADYNIQKESTLHLVLR+RGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 95.9005 bits (237), Expect = 7.067e-20
Identity = 48/51 (94.12%), Postives = 48/51 (94.12%), Query Frame = 3

Query:  276 MQIFVKTLTGKTITLEVESSDTIDNVKANIQDKEGIPPDQHRLIFAGKHLE 428
            MQIFVKTLTGKTITLEVESSDTIDNVKA IQDKEGIPPDQ RLIFAGK LE
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 51

BLAST of CX289320 vs. ExPASy Swiss-Prot
Match: UBIQ_ASPOF (Ubiquitin OS=Asparagus officinalis PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.567e-35
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 3

Query:   48 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFTGKQLEDGRTLADYNIQKESTLHLVLRVRGG 275
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF GKQLEDGRTLADYNIQKESTLHLVLR+RGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 95.9005 bits (237), Expect = 7.067e-20
Identity = 48/51 (94.12%), Postives = 48/51 (94.12%), Query Frame = 3

Query:  276 MQIFVKTLTGKTITLEVESSDTIDNVKANIQDKEGIPPDQHRLIFAGKHLE 428
            MQIFVKTLTGKTITLEVESSDTIDNVKA IQDKEGIPPDQ RLIFAGK LE
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 51

The following BLAST results are available for this feature:

BLAST of CX289320 vs. ExPASy Swiss-Prot

BLAST of CX289320 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93


Match Name	E-value	Identity	Description
UBIQ_LUPAL	1.567e-35	97.37	Ubiquitin OS=Lupinus albus PE=3 SV=1	[more]
UBIQ_LINUS	1.567e-35	97.37	Ubiquitin OS=Linum usitatissimum PE=3 SV=1	[more]
UBIQ_HORVU	1.567e-35	97.37	Ubiquitin OS=Hordeum vulgare GN=MUB1 PE=3 SV=1	[more]
UBIQ_HELAN	1.567e-35	97.37	Ubiquitin OS=Helianthus annuus PE=3 SV=1	[more]
UBIQ_DESAN	1.567e-35	97.37	Ubiquitin OS=Deschampsia antarctica PE=2 SV=1	[more]
UBIQ_DAUCA	1.567e-35	97.37	Ubiquitin OS=Daucus carota PE=3 SV=1	[more]
UBIQ_BRARA	1.567e-35	97.37	Ubiquitin OS=Brassica rapa PE=3 SV=1	[more]
UBIQ_AVESA	1.567e-35	97.37	Ubiquitin OS=Avena sativa PE=1 SV=1	[more]
UBIQ_AVEFA	1.567e-35	97.37	Ubiquitin OS=Avena fatua PE=3 SV=1	[more]
UBIQ_ASPOF	1.567e-35	97.37	Ubiquitin OS=Asparagus officinalis PE=3 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	C02011F08SK IF1 Citrus clementina cDNA clone C02011F08, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX289320 ID=CX289320; Name=CX289320; organism=Citrus clementina; type=EST; length=430bp
AACATACTTAGTTTAGATACCAAGGCTCCCAATCTCATCCTTACAACATG
CAGATCTTTGTGAAAACTTTGACCGGCAAGACCATCACTCTCGAGGTGGA
GAGCTCCGACACGATCGACAACGTCAAGGCTAAGATCCAGGACAAGGAAG
GGATTCCACCGGACCAGCAGCGGCTGATCTTCACCGGAAAGCAGCTCGAG
GACGGGCGCACCTTGGCGGATTACAACATCCAGAAGGAGTCGACTCTCCA
CCTCGTCCTCCGTGTTCGCGGCGGCATGCAGATCTTCGTCAAGACTCTGA
CCGGGAAGACGATCACCCTGGAGGTGGAGAGCTCCGACACGATCGACAAC
GTGAAGGCGAATATCCAGGACAAGGAAGGGATCCCCCCGGACCAGCATAG
GCTCATCTTCGCCGGCAAGCATCTGGAGGA