CX289320

Overview
NameCX289320
Unique NameCX289320
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length430
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX289320 vs. ExPASy Swiss-Prot
Match: UBIQ_ARATH (Ubiquitin OS=Arabidopsis thaliana GN=UBQ1 PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.567e-35
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 3 
Query:   48 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFTGKQLEDGRTLADYNIQKESTLHLVLRVRGG 275
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF GKQLEDGRTLADYNIQKESTLHLVLR+RGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 95.9005 bits (237), Expect = 7.067e-20
Identity = 48/51 (94.12%), Postives = 48/51 (94.12%), Query Frame = 3 
Query:  276 MQIFVKTLTGKTITLEVESSDTIDNVKANIQDKEGIPPDQHRLIFAGKHLE 428
            MQIFVKTLTGKTITLEVESSDTIDNVKA IQDKEGIPPDQ RLIFAGK LE
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 51
[Close]
BLAST of CX289320 vs. ExPASy Swiss-Prot
Match: UBIQ_COPCO (Ubiquitin OS=Coprinus congregatus PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 3.491e-35
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 3 
Query:   48 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFTGKQLEDGRTLADYNIQKESTLHLVLRVRGG 275
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF GKQLEDGRTL+DYNIQKESTLHLVLR+RGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 95.9005 bits (237), Expect = 7.067e-20
Identity = 48/51 (94.12%), Postives = 48/51 (94.12%), Query Frame = 3 
Query:  276 MQIFVKTLTGKTITLEVESSDTIDNVKANIQDKEGIPPDQHRLIFAGKHLE 428
            MQIFVKTLTGKTITLEVESSDTIDNVKA IQDKEGIPPDQ RLIFAGK LE
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 51
[Close]
BLAST of CX289320 vs. ExPASy Swiss-Prot
Match: UBIQ_CHLRE (Ubiquitin OS=Chlamydomonas reinhardtii GN=UBI1 PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 4.559e-35
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 3 
Query:   48 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFTGKQLEDGRTLADYNIQKESTLHLVLRVRGG 275
            MQIFVKTLTGKTITLEVESSDTI+NVKAKIQDKEGIPPDQQRLIF GKQLEDGRTLADYNIQKESTLHLVLR+RGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 94.3597 bits (233), Expect = 2.056e-19
Identity = 47/51 (92.16%), Postives = 48/51 (94.12%), Query Frame = 3 
Query:  276 MQIFVKTLTGKTITLEVESSDTIDNVKANIQDKEGIPPDQHRLIFAGKHLE 428
            MQIFVKTLTGKTITLEVESSDTI+NVKA IQDKEGIPPDQ RLIFAGK LE
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE 51
[Close]
BLAST of CX289320 vs. ExPASy Swiss-Prot
Match: UBIQ_YEAST (Ubiquitin OS=Saccharomyces cerevisiae GN=UBI1 PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 7.777e-35
Identity = 72/76 (94.74%), Postives = 75/76 (98.68%), Query Frame = 3 
Query:   48 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFTGKQLEDGRTLADYNIQKESTLHLVLRVRGG 275
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIF GKQLEDGRTL+DYNIQKESTLHLVLR+RGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 94.7449 bits (234), Expect = 1.574e-19
Identity = 47/51 (92.16%), Postives = 48/51 (94.12%), Query Frame = 3 
Query:  276 MQIFVKTLTGKTITLEVESSDTIDNVKANIQDKEGIPPDQHRLIFAGKHLE 428
            MQIFVKTLTGKTITLEVESSDTIDNVK+ IQDKEGIPPDQ RLIFAGK LE
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLE 51
[Close]
BLAST of CX289320 vs. ExPASy Swiss-Prot
Match: UBIQ_SCHPO (Ubiquitin OS=Schizosaccharomyces pombe GN=ubi1 PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 7.777e-35
Identity = 72/76 (94.74%), Postives = 75/76 (98.68%), Query Frame = 3 
Query:   48 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFTGKQLEDGRTLADYNIQKESTLHLVLRVRGG 275
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIF GKQLEDGRTL+DYNIQKESTLHLVLR+RGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 94.7449 bits (234), Expect = 1.574e-19
Identity = 47/51 (92.16%), Postives = 48/51 (94.12%), Query Frame = 3 
Query:  276 MQIFVKTLTGKTITLEVESSDTIDNVKANIQDKEGIPPDQHRLIFAGKHLE 428
            MQIFVKTLTGKTITLEVESSDTIDNVK+ IQDKEGIPPDQ RLIFAGK LE
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLE 51
[Close]
BLAST of CX289320 vs. ExPASy Swiss-Prot
Match: UBIQ_KLULA (Ubiquitin OS=Kluyveromyces lactis GN=ubi3 PE=1 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 7.777e-35
Identity = 72/76 (94.74%), Postives = 75/76 (98.68%), Query Frame = 3 
Query:   48 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFTGKQLEDGRTLADYNIQKESTLHLVLRVRGG 275
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIF GKQLEDGRTL+DYNIQKESTLHLVLR+RGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 94.7449 bits (234), Expect = 1.574e-19
Identity = 47/51 (92.16%), Postives = 48/51 (94.12%), Query Frame = 3 
Query:  276 MQIFVKTLTGKTITLEVESSDTIDNVKANIQDKEGIPPDQHRLIFAGKHLE 428
            MQIFVKTLTGKTITLEVESSDTIDNVK+ IQDKEGIPPDQ RLIFAGK LE
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLE 51
[Close]
BLAST of CX289320 vs. ExPASy Swiss-Prot
Match: UBIQ_CRYNE (Ubiquitin OS=Cryptococcus neoformans GN=UBI1 PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 7.777e-35
Identity = 72/76 (94.74%), Postives = 75/76 (98.68%), Query Frame = 3 
Query:   48 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFTGKQLEDGRTLADYNIQKESTLHLVLRVRGG 275
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIF GKQLEDGRTL+DYNIQKESTLHLVLR+RGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 94.7449 bits (234), Expect = 1.574e-19
Identity = 47/51 (92.16%), Postives = 48/51 (94.12%), Query Frame = 3 
Query:  276 MQIFVKTLTGKTITLEVESSDTIDNVKANIQDKEGIPPDQHRLIFAGKHLE 428
            MQIFVKTLTGKTITLEVESSDTIDNVK+ IQDKEGIPPDQ RLIFAGK LE
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLE 51
[Close]
BLAST of CX289320 vs. ExPASy Swiss-Prot
Match: UBIQ_CANAL (Ubiquitin OS=Candida albicans GN=UBI1 PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 7.777e-35
Identity = 72/76 (94.74%), Postives = 75/76 (98.68%), Query Frame = 3 
Query:   48 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFTGKQLEDGRTLADYNIQKESTLHLVLRVRGG 275
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIF GKQLEDGRTL+DYNIQKESTLHLVLR+RGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 94.7449 bits (234), Expect = 1.574e-19
Identity = 47/51 (92.16%), Postives = 48/51 (94.12%), Query Frame = 3 
Query:  276 MQIFVKTLTGKTITLEVESSDTIDNVKANIQDKEGIPPDQHRLIFAGKHLE 428
            MQIFVKTLTGKTITLEVESSDTIDNVK+ IQDKEGIPPDQ RLIFAGK LE
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLE 51
[Close]
BLAST of CX289320 vs. ExPASy Swiss-Prot
Match: UBL1_ORYSJ (Ubiquitin-like protein 1 OS=Oryza sativa subsp. japonica GN=UBL1 PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.016e-34
Identity = 72/76 (94.74%), Postives = 74/76 (97.37%), Query Frame = 3 
Query:   48 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFTGKQLEDGRTLADYNIQKESTLHLVLRVRGG 275
            MQIFVKTLTGKTITLEVESSDTI NVKAK+QDKEGIPPDQQRLIF GKQLEDGRTLADYNIQKESTLHLVLR+RGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIQNVKAKVQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 93.2041 bits (230), Expect = 4.580e-19
Identity = 46/51 (90.20%), Postives = 47/51 (92.16%), Query Frame = 3 
Query:  276 MQIFVKTLTGKTITLEVESSDTIDNVKANIQDKEGIPPDQHRLIFAGKHLE 428
            MQIFVKTLTGKTITLEVESSDTI NVKA +QDKEGIPPDQ RLIFAGK LE
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIQNVKAKVQDKEGIPPDQQRLIFAGKQLE 51
[Close]
BLAST of CX289320 vs. ExPASy Swiss-Prot
Match: UBIQ_NEUCR (Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.327e-34
Identity = 72/76 (94.74%), Postives = 74/76 (97.37%), Query Frame = 3 
Query:   48 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFTGKQLEDGRTLADYNIQKESTLHLVLRVRGG 275
            MQIFVKTLTGKTITLEVESSDTIDNVK KIQDKEGIPPDQQRLIF GKQLEDGRTL+DYNIQKESTLHLVLR+RGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 93.9745 bits (232), Expect = 2.685e-19
Identity = 47/51 (92.16%), Postives = 47/51 (92.16%), Query Frame = 3 
Query:  276 MQIFVKTLTGKTITLEVESSDTIDNVKANIQDKEGIPPDQHRLIFAGKHLE 428
            MQIFVKTLTGKTITLEVESSDTIDNVK  IQDKEGIPPDQ RLIFAGK LE
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLE 51
The following BLAST results are available for this feature:
BLAST of CX289320 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
UBIQ_ARATH1.567e-3597.37Ubiquitin OS=Arabidopsis thaliana GN=UBQ1 PE=1 SV=... [more]
UBIQ_COPCO3.491e-3596.05Ubiquitin OS=Coprinus congregatus PE=1 SV=1[more]
UBIQ_CHLRE4.559e-3596.05Ubiquitin OS=Chlamydomonas reinhardtii GN=UBI1 PE=... [more]
UBIQ_YEAST7.777e-3594.74Ubiquitin OS=Saccharomyces cerevisiae GN=UBI1 PE=1... [more]
UBIQ_SCHPO7.777e-3594.74Ubiquitin OS=Schizosaccharomyces pombe GN=ubi1 PE=... [more]
UBIQ_KLULA7.777e-3594.74Ubiquitin OS=Kluyveromyces lactis GN=ubi3 PE=1 SV=... [more]
UBIQ_CRYNE7.777e-3594.74Ubiquitin OS=Cryptococcus neoformans GN=UBI1 PE=1 ... [more]
UBIQ_CANAL7.777e-3594.74Ubiquitin OS=Candida albicans GN=UBI1 PE=1 SV=1[more]
UBL1_ORYSJ1.016e-3494.74Ubiquitin-like protein 1 OS=Oryza sativa subsp. ja... [more]
UBIQ_NEUCR1.327e-3494.74Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC02011F08SK IF1 Citrus clementina cDNA clone C02011F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289320 ID=CX289320; Name=CX289320; organism=Citrus clementina; type=EST; length=430bp
AACATACTTAGTTTAGATACCAAGGCTCCCAATCTCATCCTTACAACATG
CAGATCTTTGTGAAAACTTTGACCGGCAAGACCATCACTCTCGAGGTGGA
GAGCTCCGACACGATCGACAACGTCAAGGCTAAGATCCAGGACAAGGAAG
GGATTCCACCGGACCAGCAGCGGCTGATCTTCACCGGAAAGCAGCTCGAG
GACGGGCGCACCTTGGCGGATTACAACATCCAGAAGGAGTCGACTCTCCA
CCTCGTCCTCCGTGTTCGCGGCGGCATGCAGATCTTCGTCAAGACTCTGA
CCGGGAAGACGATCACCCTGGAGGTGGAGAGCTCCGACACGATCGACAAC
GTGAAGGCGAATATCCAGGACAAGGAAGGGATCCCCCCGGACCAGCATAG
GCTCATCTTCGCCGGCAAGCATCTGGAGGA
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