CX289320

Overview
NameCX289320
Unique NameCX289320
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length430
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX289320 vs. ExPASy Swiss-Prot
Match: UBIQ_CANFA (Ubiquitin OS=Canis familiaris GN=UBA52 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 3.860e-34
Identity = 71/76 (93.42%), Postives = 74/76 (97.37%), Query Frame = 3 
Query:   48 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFTGKQLEDGRTLADYNIQKESTLHLVLRVRGG 275
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIF GKQLEDGRTL+DYNIQKESTLHLVLR+RGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 92.4337 bits (228), Expect = 7.813e-19
Identity = 46/51 (90.20%), Postives = 47/51 (92.16%), Query Frame = 3 
Query:  276 MQIFVKTLTGKTITLEVESSDTIDNVKANIQDKEGIPPDQHRLIFAGKHLE 428
            MQIFVKTLTGKTITLEVE SDTI+NVKA IQDKEGIPPDQ RLIFAGK LE
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE 51
[Close]
BLAST of CX289320 vs. ExPASy Swiss-Prot
Match: UBIQ_CAMDR (Ubiquitin OS=Camelus dromedarius PE=3 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 3.860e-34
Identity = 71/76 (93.42%), Postives = 74/76 (97.37%), Query Frame = 3 
Query:   48 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFTGKQLEDGRTLADYNIQKESTLHLVLRVRGG 275
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIF GKQLEDGRTL+DYNIQKESTLHLVLR+RGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 92.4337 bits (228), Expect = 7.813e-19
Identity = 46/51 (90.20%), Postives = 47/51 (92.16%), Query Frame = 3 
Query:  276 MQIFVKTLTGKTITLEVESSDTIDNVKANIQDKEGIPPDQHRLIFAGKHLE 428
            MQIFVKTLTGKTITLEVE SDTI+NVKA IQDKEGIPPDQ RLIFAGK LE
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE 51
[Close]
BLAST of CX289320 vs. ExPASy Swiss-Prot
Match: UBIQ_BOVIN (Ubiquitin OS=Bos taurus GN=RPS27A PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 3.860e-34
Identity = 71/76 (93.42%), Postives = 74/76 (97.37%), Query Frame = 3 
Query:   48 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFTGKQLEDGRTLADYNIQKESTLHLVLRVRGG 275
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIF GKQLEDGRTL+DYNIQKESTLHLVLR+RGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 92.4337 bits (228), Expect = 7.813e-19
Identity = 46/51 (90.20%), Postives = 47/51 (92.16%), Query Frame = 3 
Query:  276 MQIFVKTLTGKTITLEVESSDTIDNVKANIQDKEGIPPDQHRLIFAGKHLE 428
            MQIFVKTLTGKTITLEVE SDTI+NVKA IQDKEGIPPDQ RLIFAGK LE
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE 51
[Close]
BLAST of CX289320 vs. ExPASy Swiss-Prot
Match: UBIQ_TETPY (Ubiquitin OS=Tetrahymena pyriformis GN=TUF11 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 5.041e-34
Identity = 70/76 (92.11%), Postives = 75/76 (98.68%), Query Frame = 3 
Query:   48 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFTGKQLEDGRTLADYNIQKESTLHLVLRVRGG 275
            MQIFVKTLTGKTITL+VE+SDTI+NVKAKIQDKEGIPPDQQRLIF GKQLEDGRTL+DYNIQKESTLHLVLR+RGG
Sbjct:    1 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 92.0485 bits (227), Expect = 1.020e-18
Identity = 45/51 (88.24%), Postives = 48/51 (94.12%), Query Frame = 3 
Query:  276 MQIFVKTLTGKTITLEVESSDTIDNVKANIQDKEGIPPDQHRLIFAGKHLE 428
            MQIFVKTLTGKTITL+VE+SDTI+NVKA IQDKEGIPPDQ RLIFAGK LE
Sbjct:    1 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE 51
[Close]
BLAST of CX289320 vs. ExPASy Swiss-Prot
Match: UBIQ_EIMBO (Ubiquitin OS=Eimeria bovis PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 8.598e-34
Identity = 70/76 (92.11%), Postives = 74/76 (97.37%), Query Frame = 3 
Query:   48 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFTGKQLEDGRTLADYNIQKESTLHLVLRVRGG 275
            MQIFVKTLTGKTITL+VE SDTI+NVKAKIQDKEGIPPDQQRLIF GKQLEDGRTL+DYNIQKESTLHLVLR+RGG
Sbjct:    1 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 91.2781 bits (225), Expect = 1.741e-18
Identity = 45/51 (88.24%), Postives = 47/51 (92.16%), Query Frame = 3 
Query:  276 MQIFVKTLTGKTITLEVESSDTIDNVKANIQDKEGIPPDQHRLIFAGKHLE 428
            MQIFVKTLTGKTITL+VE SDTI+NVKA IQDKEGIPPDQ RLIFAGK LE
Sbjct:    1 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE 51
[Close]
BLAST of CX289320 vs. ExPASy Swiss-Prot
Match: UBIQ_TRYBB (Ubiquitin OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.123e-33
Identity = 70/76 (92.11%), Postives = 74/76 (97.37%), Query Frame = 3 
Query:   48 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFTGKQLEDGRTLADYNIQKESTLHLVLRVRGG 275
            MQIFVKTLTGKTI LEVE+SDTI+NVKAKIQDKEGIPPDQQRLIF GKQLE+GRTLADYNIQKESTLHLVLR+RGG
Sbjct:    1 MQIFVKTLTGKTIALEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 91.2781 bits (225), Expect = 1.741e-18
Identity = 45/51 (88.24%), Postives = 47/51 (92.16%), Query Frame = 3 
Query:  276 MQIFVKTLTGKTITLEVESSDTIDNVKANIQDKEGIPPDQHRLIFAGKHLE 428
            MQIFVKTLTGKTI LEVE+SDTI+NVKA IQDKEGIPPDQ RLIFAGK LE
Sbjct:    1 MQIFVKTLTGKTIALEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLE 51
[Close]
BLAST of CX289320 vs. ExPASy Swiss-Prot
Match: UBIQ_STRPU (Ubiquitin OS=Strongylocentrotus purpuratus PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.123e-33
Identity = 70/76 (92.11%), Postives = 74/76 (97.37%), Query Frame = 3 
Query:   48 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFTGKQLEDGRTLADYNIQKESTLHLVLRVRGG 275
            MQIFVKTLTGKTITLEVE SD+I+NVKAKIQDKEGIPPDQQRLIF GKQLEDGRTL+DYNIQKESTLHLVLR+RGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 90.8929 bits (224), Expect = 2.273e-18
Identity = 45/51 (88.24%), Postives = 47/51 (92.16%), Query Frame = 3 
Query:  276 MQIFVKTLTGKTITLEVESSDTIDNVKANIQDKEGIPPDQHRLIFAGKHLE 428
            MQIFVKTLTGKTITLEVE SD+I+NVKA IQDKEGIPPDQ RLIFAGK LE
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLE 51
[Close]
BLAST of CX289320 vs. ExPASy Swiss-Prot
Match: UBIQ_ENCCU (Ubiquitin OS=Encephalitozoon cuniculi GN=ECU02_0740i PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.123e-33
Identity = 70/76 (92.11%), Postives = 74/76 (97.37%), Query Frame = 3 
Query:   48 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFTGKQLEDGRTLADYNIQKESTLHLVLRVRGG 275
            MQIFVKTLTGKTITLEVE SD+I+NVKAKIQDKEGIPPDQQRLIF GKQLEDGRTL+DYNIQKESTLHLVLR+RGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 90.8929 bits (224), Expect = 2.273e-18
Identity = 45/51 (88.24%), Postives = 47/51 (92.16%), Query Frame = 3 
Query:  276 MQIFVKTLTGKTITLEVESSDTIDNVKANIQDKEGIPPDQHRLIFAGKHLE 428
            MQIFVKTLTGKTITLEVE SD+I+NVKA IQDKEGIPPDQ RLIFAGK LE
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLE 51
[Close]
BLAST of CX289320 vs. ExPASy Swiss-Prot
Match: UBIQ_DICDI (Ubiquitin OS=Dictyostelium discoideum GN=ubqA PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.123e-33
Identity = 70/76 (92.11%), Postives = 73/76 (96.05%), Query Frame = 3 
Query:   48 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFTGKQLEDGRTLADYNIQKESTLHLVLRVRGG 275
            MQIFVKTLTGKTITLEVE SD I+NVKAKIQDKEGIPPDQQRLIF GKQLEDGRTL+DYNIQKESTLHLVLR+RGG
Sbjct:    1 MQIFVKTLTGKTITLEVEGSDNIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 90.8929 bits (224), Expect = 2.273e-18
Identity = 45/51 (88.24%), Postives = 46/51 (90.20%), Query Frame = 3 
Query:  276 MQIFVKTLTGKTITLEVESSDTIDNVKANIQDKEGIPPDQHRLIFAGKHLE 428
            MQIFVKTLTGKTITLEVE SD I+NVKA IQDKEGIPPDQ RLIFAGK LE
Sbjct:    1 MQIFVKTLTGKTITLEVEGSDNIENVKAKIQDKEGIPPDQQRLIFAGKQLE 51
[Close]
BLAST of CX289320 vs. ExPASy Swiss-Prot
Match: UBIQ_PHYIN (Ubiquitin OS=Phytophthora infestans PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.267e-33
Identity = 69/76 (90.79%), Postives = 73/76 (96.05%), Query Frame = 3 
Query:   48 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFTGKQLEDGRTLADYNIQKESTLHLVLRVRGG 275
            MQIFVKTLTGKTITL+VE SD+IDNVK KIQDKEGIPPDQQRLIF GKQLEDGRTL+DYNIQKESTLHLVLR+RGG
Sbjct:    1 MQIFVKTLTGKTITLDVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 89.3521 bits (220), Expect = 6.614e-18
Identity = 44/51 (86.27%), Postives = 46/51 (90.20%), Query Frame = 3 
Query:  276 MQIFVKTLTGKTITLEVESSDTIDNVKANIQDKEGIPPDQHRLIFAGKHLE 428
            MQIFVKTLTGKTITL+VE SD+IDNVK  IQDKEGIPPDQ RLIFAGK LE
Sbjct:    1 MQIFVKTLTGKTITLDVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLE 51
The following BLAST results are available for this feature:
BLAST of CX289320 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
UBIQ_CANFA3.860e-3493.42Ubiquitin OS=Canis familiaris GN=UBA52 PE=3 SV=1[more]
UBIQ_CAMDR3.860e-3493.42Ubiquitin OS=Camelus dromedarius PE=3 SV=2[more]
UBIQ_BOVIN3.860e-3493.42Ubiquitin OS=Bos taurus GN=RPS27A PE=1 SV=1[more]
UBIQ_TETPY5.041e-3492.11Ubiquitin OS=Tetrahymena pyriformis GN=TUF11 PE=3 ... [more]
UBIQ_EIMBO8.598e-3492.11Ubiquitin OS=Eimeria bovis PE=2 SV=1[more]
UBIQ_TRYBB1.123e-3392.11Ubiquitin OS=Trypanosoma brucei brucei PE=3 SV=1[more]
UBIQ_STRPU1.123e-3392.11Ubiquitin OS=Strongylocentrotus purpuratus PE=3 SV... [more]
UBIQ_ENCCU1.123e-3392.11Ubiquitin OS=Encephalitozoon cuniculi GN=ECU02_074... [more]
UBIQ_DICDI1.123e-3392.11Ubiquitin OS=Dictyostelium discoideum GN=ubqA PE=1... [more]
UBIQ_PHYIN3.267e-3390.79Ubiquitin OS=Phytophthora infestans PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC02011F08SK IF1 Citrus clementina cDNA clone C02011F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289320 ID=CX289320; Name=CX289320; organism=Citrus clementina; type=EST; length=430bp
AACATACTTAGTTTAGATACCAAGGCTCCCAATCTCATCCTTACAACATG
CAGATCTTTGTGAAAACTTTGACCGGCAAGACCATCACTCTCGAGGTGGA
GAGCTCCGACACGATCGACAACGTCAAGGCTAAGATCCAGGACAAGGAAG
GGATTCCACCGGACCAGCAGCGGCTGATCTTCACCGGAAAGCAGCTCGAG
GACGGGCGCACCTTGGCGGATTACAACATCCAGAAGGAGTCGACTCTCCA
CCTCGTCCTCCGTGTTCGCGGCGGCATGCAGATCTTCGTCAAGACTCTGA
CCGGGAAGACGATCACCCTGGAGGTGGAGAGCTCCGACACGATCGACAAC
GTGAAGGCGAATATCCAGGACAAGGAAGGGATCCCCCCGGACCAGCATAG
GCTCATCTTCGCCGGCAAGCATCTGGAGGA
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