CX289320

Overview
NameCX289320
Unique NameCX289320
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length430
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289320 vs. ExPASy Swiss-Prot
Match: UBL1_SCHPO (Ubiquitin-like protein 1 OS=Schizosaccharomyces pombe GN=ubl1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.551e-17
Identity = 38/76 (50.00%), Postives = 55/76 (72.37%), Query Frame = 3
Query:   48 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFTGKQLEDGRTLADYNIQKESTLHLVLRVRGG 275
            M I VKTLTGK I L+++ +D +  +K ++++KEGIPP QQRLI+ GKQ+ D +    Y+++  S LHLVL +RGG
Sbjct:    1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLVLALRGG 76          
BLAST of CX289320 vs. ExPASy Swiss-Prot
Match: RUB1_YEAST (NEDD8-like protein RUB1 OS=Saccharomyces cerevisiae GN=RUB1 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 8.085e-16
Identity = 39/76 (51.32%), Postives = 57/76 (75.00%), Query Frame = 3
Query:   48 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFTGKQLEDGRTLADYNIQKESTLHLVLRVRGG 275
            M + VKTLTGK I++E++ SD + ++K  +++KEGIPP QQRLIF GKQ++D  T+ D ++ +   LHLVL +RGG
Sbjct:    1 MIVKVKTLTGKEISVELKESDLVYHIKELLEEKEGIPPSQQRLIFQGKQIDDKLTVTDAHLVEGMQLHLVLTLRGG 76          
BLAST of CX289320 vs. ExPASy Swiss-Prot
Match: ANUB1_HUMAN (AN1-type zinc finger and ubiquitin domain-containing protein 1 OS=Homo sapiens GN=ANUBL1 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.208e-11
Identity = 36/76 (47.37%), Postives = 50/76 (65.79%), Query Frame = 3
Query:   48 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFTGKQLEDGRTLADYNIQKESTLHLVLRVRGG 275
            M++F++TLTG    L V   +T+ +VKAKI+  EGIP  +Q LI+   +LE+   L DYNI +  TL LVL +RGG
Sbjct:   28 MELFIETLTGTCFELRVSPFETVISVKAKIRRLEGIPICRQHLIWNNMELENDYCLNDYNISEGCTLKLVLAMRGG 103          
The following BLAST results are available for this feature:
BLAST of CX289320 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
UBL1_SCHPO9.551e-1750.00Ubiquitin-like protein 1 OS=Schizosaccharomyces po... [more]
RUB1_YEAST8.085e-1651.32NEDD8-like protein RUB1 OS=Saccharomyces cerevisia... [more]
ANUB1_HUMAN1.208e-1147.37AN1-type zinc finger and ubiquitin domain-containi... [more]

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Properties
Property NameValue
Genbank descriptionC02011F08SK IF1 Citrus clementina cDNA clone C02011F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289320 ID=CX289320; Name=CX289320; organism=Citrus clementina; type=EST; length=430bp
AACATACTTAGTTTAGATACCAAGGCTCCCAATCTCATCCTTACAACATG
CAGATCTTTGTGAAAACTTTGACCGGCAAGACCATCACTCTCGAGGTGGA
GAGCTCCGACACGATCGACAACGTCAAGGCTAAGATCCAGGACAAGGAAG
GGATTCCACCGGACCAGCAGCGGCTGATCTTCACCGGAAAGCAGCTCGAG
GACGGGCGCACCTTGGCGGATTACAACATCCAGAAGGAGTCGACTCTCCA
CCTCGTCCTCCGTGTTCGCGGCGGCATGCAGATCTTCGTCAAGACTCTGA
CCGGGAAGACGATCACCCTGGAGGTGGAGAGCTCCGACACGATCGACAAC
GTGAAGGCGAATATCCAGGACAAGGAAGGGATCCCCCCGGACCAGCATAG
GCTCATCTTCGCCGGCAAGCATCTGGAGGA
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