CX289327

Overview
NameCX289327
Unique NameCX289327
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length593
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289327 vs. ExPASy Swiss-Prot
Match: SODM1_BACCR (Superoxide dismutase [Mn] 1 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=sodA1 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.450e-22
Identity = 54/125 (43.20%), Postives = 76/125 (60.80%), Query Frame = 3
Query:    3 SIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 377
            + FW  L+P   GGG+P    L  AI+  FGS +A  ++ +  GA   GSGW WL ++     L V +T NQD  +T+  T  P++G+DVWEHAYYL Y+N +PDY+   WNV++W  A   YQ+
Sbjct:   99 TFFWTILSP--NGGGQPV-GELATAIEAKFGSFDAFKEEFAKAGATRFGSGWAWLVVNNG--ELEVTSTPNQDSPLTEGKT--PVIGLDVWEHAYYLNYQNRRPDYIGAFWNVVDWNAAEKRYQE 216          
BLAST of CX289327 vs. ExPASy Swiss-Prot
Match: SODM1_BACAN (Superoxide dismutase [Mn] 1 OS=Bacillus anthracis GN=sodA1 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.450e-22
Identity = 54/125 (43.20%), Postives = 76/125 (60.80%), Query Frame = 3
Query:    3 SIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 377
            + FW  L+P   GGG+P    L  AI+  FGS +A  ++ +  GA   GSGW WL ++     L V +T NQD  +T+  T  P++G+DVWEHAYYL Y+N +PDY+   WNV++W  A   YQ+
Sbjct:   84 TFFWTILSP--NGGGQPV-GELATAIEAKFGSFDAFKEEFAKAGATRFGSGWAWLVVNNG--ELEVTSTPNQDSPLTEGKT--PVIGLDVWEHAYYLNYQNRRPDYIGAFWNVVDWNAAEKRYQE 201          
BLAST of CX289327 vs. ExPASy Swiss-Prot
Match: SODM_LISIV (Superoxide dismutase [Mn] OS=Listeria ivanovii GN=sodA PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.506e-22
Identity = 49/116 (42.24%), Postives = 77/116 (66.38%), Query Frame = 3
Query:    3 SIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 350
            ++FW +L+P    GG  P  +L  AI++ FG+ +   +K +A  AA  GSGW WL ++    +L + +TANQD  +++  T  P+LG+DVWEHAYYL+++N +P+Y+   WNV+NW
Sbjct:   83 TLFWSSLSP---NGGGAPTGNLKAAIESEFGTFDEFKEKFNAAAAARFGSGWAWLVVNNG--KLEIVSTANQDSPLSEGKT--PVLGLDVWEHAYYLKFQNRRPEYIDTFWNVINW 191          
BLAST of CX289327 vs. ExPASy Swiss-Prot
Match: SODM_LACLM (Superoxide dismutase [Mn] OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=sodA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.686e-22
Identity = 53/125 (42.40%), Postives = 74/125 (59.20%), Query Frame = 3
Query:    3 SIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 377
            S FW  L P  +G        +G AI   FGS E    +  A      GSGW WL +D E  +L V +TANQD  +++   L P+LG+DVWEHAYYL+Y NV+PDY++  +N++NW   +++Y K
Sbjct:   83 SQFWLWLRPNTDGSENHADGEIGDAIAKEFGSFETFKTEFKAAATGRFGSGWAWLVVD-EAGKLKVVSTANQDNPISEG--LTPVLGLDVWEHAYYLKYHNVRPDYIEAFFNLVNWDKVNELYAK 204          
BLAST of CX289327 vs. ExPASy Swiss-Prot
Match: SODM_LACLA (Superoxide dismutase [Mn] OS=Lactococcus lactis subsp. lactis GN=sodA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.686e-22
Identity = 53/125 (42.40%), Postives = 74/125 (59.20%), Query Frame = 3
Query:    3 SIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 377
            S FW  L P  +G        +G AI   FGS E    +  A      GSGW WL +D E  +L V +TANQD  +++   L P+LG+DVWEHAYYL+Y NV+PDY++  +N++NW   +++Y K
Sbjct:   83 SQFWLWLRPNTDGSENHADGEIGDAIAKEFGSFETFKTEFKAAATGRFGSGWAWLVVD-EAGKLKVVSTANQDNPISEG--LTPVLGLDVWEHAYYLKYHNVRPDYIEAFFNLVNWDKVNELYAK 204          
BLAST of CX289327 vs. ExPASy Swiss-Prot
Match: SODM_LISMO (Superoxide dismutase [Mn] OS=Listeria monocytogenes GN=sodA PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.004e-21
Identity = 50/120 (41.67%), Postives = 78/120 (65.00%), Query Frame = 3
Query:    3 SIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 362
            ++FW  L+P    GG  P  +L  AI++ FG+ +   +K +A  AA  GSGW WL ++    +L + +TANQD  ++   T  P+LG+DVWEHAYYL+++N +P+Y++  WNV+NW  A+
Sbjct:   83 TLFWSILSP---NGGGAPTGNLKAAIESEFGTFDEFKEKFNAAAAARFGSGWAWLVVNDG--KLEIVSTANQDSPLSDGKT--PVLGLDVWEHAYYLKFQNRRPEYIETFWNVINWDEAN 195          
BLAST of CX289327 vs. ExPASy Swiss-Prot
Match: SODM_CHLRE (Superoxide dismutase [Mn], mitochondrial OS=Chlamydomonas reinhardtii GN=SODA PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.004e-21
Identity = 52/128 (40.62%), Postives = 79/128 (61.72%), Query Frame = 3
Query:    3 SIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKAPTL---VPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 374
            S FWK +       G  P+  +  AI+  FGS++ +  K +A  A   GSGW WL +  +   L +++T NQD PL+T  P +   +PLLG+DVWEHAYYL+Y+N +P+Y+   WNV+NW+  ++ Y+
Sbjct:   85 SFFWKVMTNPSNTNG--PNGDVKAAIEASFGSVDEMKAKFNAAAAGRFGSGWAWLSVKPDGS-LSIDSTPNQDNPLMTALPDVAGGIPLLGLDVWEHAYYLKYQNRRPEYIAAWWNVVNWEQVAENYK 209          
BLAST of CX289327 vs. ExPASy Swiss-Prot
Match: SODM_NEUCR (Superoxide dismutase [Mn], mitochondrial OS=Neurospora crassa GN=sod-2 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.311e-21
Identity = 57/128 (44.53%), Postives = 76/128 (59.38%), Query Frame = 3
Query:    3 SIFWKNLAPVH--EGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDT--EFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 374
            S+FWKNLAP    E        SL   I+  +GS +   +  SA    +QGSGW WL  ++  E  RL + TT +QDP+V      VP+ G+D+WEHAYYLQY N K  Y++NIW V+NWK A + +Q
Sbjct:  107 SLFWKNLAPAETPETNYSKAAPSLAAEIEKTWGSFDEFKKAFSAALLGIQGSGWGWLVKESTAEKGRLRIITTKDQDPVVGGE---VPVFGVDMWEHAYYLQYLNGKAAYVENIWKVINWKTAEERFQ 231          
BLAST of CX289327 vs. ExPASy Swiss-Prot
Match: SODM_HAEIN (Superoxide dismutase [Mn] OS=Haemophilus influenzae GN=sodA PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.311e-21
Identity = 52/129 (40.31%), Postives = 75/129 (58.14%), Query Frame = 3
Query:    3 SIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLV---PLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQKE 380
            S+FWK+L       G     +L  AI+  FGS++A   +     A   GSGW WL L  E K  VV T    +PL+ K        PLLG+DVWEHAYYL+++N +PDY+K  WNV+NW + ++ ++++
Sbjct:   84 SLFWKSLKK-----GTTLQGALKDAIERDFGSVDAFKAEFEKAAATRFGSGWAWLVLTAEGKLAVVSTANQDNPLMGKEVAGCEGFPLLGLDVWEHAYYLKFQNRRPDYIKEFWNVVNWDFVAERFEQK 207          
BLAST of CX289327 vs. ExPASy Swiss-Prot
Match: SODM_LISIN (Superoxide dismutase [Mn] OS=Listeria innocua GN=sodA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.236e-21
Identity = 50/120 (41.67%), Postives = 76/120 (63.33%), Query Frame = 3
Query:    3 SIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 362
            ++FW  L+P    GG  P   L  AI++ FG+ +   +K +A  AA  GSGW WL ++    +L + +TANQD  ++   T  P+LG+DVWEHAYYL+++N +P+Y+   WNV+NW  A+
Sbjct:   83 TLFWSILSP---NGGGAPTGDLKSAIESEFGTFDDFKEKFNAAAAARFGSGWAWLVVNNG--KLEIVSTANQDSPLSDGKT--PVLGLDVWEHAYYLKFQNRRPEYIDTFWNVVNWDEAN 195          
The following BLAST results are available for this feature:
BLAST of CX289327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 206
Match NameE-valueIdentityDescription
SODM1_BACCR3.450e-2243.20Superoxide dismutase [Mn] 1 OS=Bacillus cereus (st... [more]
SODM1_BACAN3.450e-2243.20Superoxide dismutase [Mn] 1 OS=Bacillus anthracis ... [more]
SODM_LISIV4.506e-2242.24Superoxide dismutase [Mn] OS=Listeria ivanovii GN=... [more]
SODM_LACLM7.686e-2242.40Superoxide dismutase [Mn] OS=Lactococcus lactis su... [more]
SODM_LACLA7.686e-2242.40Superoxide dismutase [Mn] OS=Lactococcus lactis su... [more]
SODM_LISMO1.004e-2141.67Superoxide dismutase [Mn] OS=Listeria monocytogene... [more]
SODM_CHLRE1.004e-2140.63Superoxide dismutase [Mn], mitochondrial OS=Chlamy... [more]
SODM_NEUCR1.311e-2144.53Superoxide dismutase [Mn], mitochondrial OS=Neuros... [more]
SODM_HAEIN1.311e-2140.31Superoxide dismutase [Mn] OS=Haemophilus influenza... [more]
SODM_LISIN2.236e-2141.67Superoxide dismutase [Mn] OS=Listeria innocua GN=s... [more]

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Properties
Property NameValue
Genbank descriptionC02011G04SK IF1 Citrus clementina cDNA clone C02011G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289327 ID=CX289327; Name=CX289327; organism=Citrus clementina; type=EST; length=593bp
ACTCAATTTTCTGGAAGAATCTTGCTCCTGTTCACGAAGGAGGTGGCGAG
CCACCACATAGTTCCCTTGGTTGGGCTATTGACACGCATTTTGGTTCTCT
GGAAGCATTGATACAAAAGATGAGTGCTGAGGGTGCAGCTTTGCAGGGCT
CTGGATGGGTGTGGCTTGGTTTGGATACAGAGTTTAAAAGGCTTGTGGTT
GAAACTACTGCAAATCAGGATCCGCTGGTGACTAAAGCCCCAACTCTGGT
TCCTTTGCTTGGTATAGATGTTTGGGAGCATGCATACTACCTACAGTACA
AGAATGTCAAACCAGATTATCTGAAAAACATTTGGAACGTAATGAACTGG
AAGTATGCTAGTGATGTGTATCAGAAAGAATGCCCTTAAGCTTGGAGCTC
TTCCTTGAGCATGGAGTTCTTCGTTTGATCTGGGTTCTCTCTTGGGTTCA
AGAGACGAATATCCTTGCAGCTTTTCACGCTGAAGTGACAATAAAACGAT
ATTTTGCAGATGATGACAGACACCCTTTCTTTTGCAGTGAGTGTTACTTG
TGTATCCCTTATGTGACATCCAAAATAATATTGGGGTTTATGC
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