CX289327

Overview
NameCX289327
Unique NameCX289327
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length593
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289327 vs. ExPASy Swiss-Prot
Match: SODM_CHAFE (Superoxide dismutase [Mn], mitochondrial OS=Charybdis feriatus PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.449e-20
Identity = 60/109 (55.05%), Postives = 72/109 (66.06%), Query Frame = 3
Query:    3 SIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPT-LVPLLGIDVWEHAYYLQYKNVKPDYLK 326
            SIFW+NL+     GGEP    L  AI+  FGS+E +  ++SA+  A+QGSGW WLG   E   L + T  NQDPL  +A T LVPL GIDVWEHAYYLQYKNV+   LK
Sbjct:   95 SIFWQNLSA---DGGEPEGELLA-AINRDFGSVENMKNQLSAQTVAVQGSGWGWLGYIAE-GALQIATCPNQDPL--EATTGLVPLFGIDVWEHAYYLQYKNVRRIMLK 196          
BLAST of CX289327 vs. ExPASy Swiss-Prot
Match: SODM_STACA (Superoxide dismutase [Mn/Fe] OS=Staphylococcus carnosus GN=sodA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.893e-20
Identity = 50/124 (40.32%), Postives = 73/124 (58.87%), Query Frame = 3
Query:    3 SIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 374
            S+FW+ L P  E  G          I   +GSL+    + + + A   GSGW WL +D + K L + +T NQD  +T+  T  P+LG+DVWEHAYYL+Y+N +PDY+   WNV+NW    ++Y+
Sbjct:   82 SLFWQLLTPNSEEKGTVIDK-----IKEEWGSLDKFKDEFAKKAAGQFGSGWAWLVVDKDGK-LEIVSTPNQDNPITEGKT--PILGLDVWEHAYYLKYQNKRPDYIDAFWNVVNWNKVDELYE 197          
BLAST of CX289327 vs. ExPASy Swiss-Prot
Match: SODM1_STAAW (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain MW2) GN=sodA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.893e-20
Identity = 51/123 (41.46%), Postives = 75/123 (60.98%), Query Frame = 3
Query:    3 SIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 371
            S+FW+ L+P  E  G          I   +GSLE   ++ + + AA  GSGW WL ++    +L + TT NQD  +T+  T  P+LG+DVWEHAYYL+Y+N +PDY+   WNV+NW+   ++Y
Sbjct:   82 SLFWELLSPNSEEKGTVVEK-----IKEQWGSLEEFKKEFADKAAARFGSGWAWLVVNNG--QLEIVTTPNQDNPLTEGKT--PILGLDVWEHAYYLKYQNKRPDYIGAFWNVVNWEKVDELY 195          
BLAST of CX289327 vs. ExPASy Swiss-Prot
Match: SODM1_STAAS (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain MSSA476) GN=sodA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.893e-20
Identity = 51/123 (41.46%), Postives = 75/123 (60.98%), Query Frame = 3
Query:    3 SIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 371
            S+FW+ L+P  E  G          I   +GSLE   ++ + + AA  GSGW WL ++    +L + TT NQD  +T+  T  P+LG+DVWEHAYYL+Y+N +PDY+   WNV+NW+   ++Y
Sbjct:   82 SLFWELLSPNSEEKGTVVEK-----IKEQWGSLEEFKKEFADKAAARFGSGWAWLVVNNG--QLEIVTTPNQDNPLTEGKT--PILGLDVWEHAYYLKYQNKRPDYIGAFWNVVNWEKVDELY 195          
BLAST of CX289327 vs. ExPASy Swiss-Prot
Match: SODM1_STAAR (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain MRSA252) GN=sodA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.893e-20
Identity = 51/123 (41.46%), Postives = 75/123 (60.98%), Query Frame = 3
Query:    3 SIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 371
            S+FW+ L+P  E  G          I   +GSLE   ++ + + AA  GSGW WL ++    +L + TT NQD  +T+  T  P+LG+DVWEHAYYL+Y+N +PDY+   WNV+NW+   ++Y
Sbjct:   82 SLFWELLSPNSEEKGTVVEK-----IKEQWGSLEEFKKEFADKAAARFGSGWAWLVVNNG--QLEIVTTPNQDNPLTEGKT--PILGLDVWEHAYYLKYQNKRPDYIGAFWNVVNWEKVDELY 195          
BLAST of CX289327 vs. ExPASy Swiss-Prot
Match: SODM1_STAAN (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain N315) GN=sodA PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.893e-20
Identity = 51/123 (41.46%), Postives = 75/123 (60.98%), Query Frame = 3
Query:    3 SIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 371
            S+FW+ L+P  E  G          I   +GSLE   ++ + + AA  GSGW WL ++    +L + TT NQD  +T+  T  P+LG+DVWEHAYYL+Y+N +PDY+   WNV+NW+   ++Y
Sbjct:   82 SLFWELLSPNSEEKGTVVEK-----IKEQWGSLEEFKKEFADKAAARFGSGWAWLVVNNG--QLEIVTTPNQDNPLTEGKT--PILGLDVWEHAYYLKYQNKRPDYIGAFWNVVNWEKVDELY 195          
BLAST of CX289327 vs. ExPASy Swiss-Prot
Match: SODM1_STAAM (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=sodA PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.893e-20
Identity = 51/123 (41.46%), Postives = 75/123 (60.98%), Query Frame = 3
Query:    3 SIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 371
            S+FW+ L+P  E  G          I   +GSLE   ++ + + AA  GSGW WL ++    +L + TT NQD  +T+  T  P+LG+DVWEHAYYL+Y+N +PDY+   WNV+NW+   ++Y
Sbjct:   82 SLFWELLSPNSEEKGTVVEK-----IKEQWGSLEEFKKEFADKAAARFGSGWAWLVVNNG--QLEIVTTPNQDNPLTEGKT--PILGLDVWEHAYYLKYQNKRPDYIGAFWNVVNWEKVDELY 195          
BLAST of CX289327 vs. ExPASy Swiss-Prot
Match: SODM1_STAAC (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain COL) GN=sodA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.893e-20
Identity = 51/123 (41.46%), Postives = 75/123 (60.98%), Query Frame = 3
Query:    3 SIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 371
            S+FW+ L+P  E  G          I   +GSLE   ++ + + AA  GSGW WL ++    +L + TT NQD  +T+  T  P+LG+DVWEHAYYL+Y+N +PDY+   WNV+NW+   ++Y
Sbjct:   82 SLFWELLSPNSEEKGTVVEK-----IKEQWGSLEEFKKEFADKAAARFGSGWAWLVVNNG--QLEIVTTPNQDNPLTEGKT--PILGLDVWEHAYYLKYQNKRPDYIGAFWNVVNWEKVDELY 195          
BLAST of CX289327 vs. ExPASy Swiss-Prot
Match: SODM1_STAAB (Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=sodA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.893e-20
Identity = 51/123 (41.46%), Postives = 75/123 (60.98%), Query Frame = 3
Query:    3 SIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 371
            S+FW+ L+P  E  G          I   +GSLE   ++ + + AA  GSGW WL ++    +L + TT NQD  +T+  T  P+LG+DVWEHAYYL+Y+N +PDY+   WNV+NW+   ++Y
Sbjct:   82 SLFWELLSPNSEEKGTVVEK-----IKEQWGSLEEFKKEFADKAAARFGSGWAWLVVNNG--QLEIVTTPNQDNPLTEGKT--PILGLDVWEHAYYLKYQNKRPDYIGAFWNVVNWEKVDELY 195          
BLAST of CX289327 vs. ExPASy Swiss-Prot
Match: SODM1_STAA8 (Superoxide dismutase [Mn] 1 OS=Staphylococcus aureus (strain NCTC 8325) GN=sodA PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.893e-20
Identity = 51/123 (41.46%), Postives = 75/123 (60.98%), Query Frame = 3
Query:    3 SIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 371
            S+FW+ L+P  E  G          I   +GSLE   ++ + + AA  GSGW WL ++    +L + TT NQD  +T+  T  P+LG+DVWEHAYYL+Y+N +PDY+   WNV+NW+   ++Y
Sbjct:   82 SLFWELLSPNSEEKGTVVEK-----IKEQWGSLEEFKKEFADKAAARFGSGWAWLVVNNG--QLEIVTTPNQDNPLTEGKT--PILGLDVWEHAYYLKYQNKRPDYIGAFWNVVNWEKVDELY 195          
The following BLAST results are available for this feature:
BLAST of CX289327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 206
Match NameE-valueIdentityDescription
SODM_CHAFE1.449e-2055.05Superoxide dismutase [Mn], mitochondrial OS=Charyb... [more]
SODM_STACA1.893e-2040.32Superoxide dismutase [Mn/Fe] OS=Staphylococcus car... [more]
SODM1_STAAW1.893e-2041.46Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAAS1.893e-2041.46Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAAR1.893e-2041.46Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAAN1.893e-2041.46Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAAM1.893e-2041.46Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAAC1.893e-2041.46Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAAB1.893e-2041.46Superoxide dismutase [Mn/Fe] 1 OS=Staphylococcus a... [more]
SODM1_STAA81.893e-2041.46Superoxide dismutase [Mn] 1 OS=Staphylococcus aure... [more]

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Properties
Property NameValue
Genbank descriptionC02011G04SK IF1 Citrus clementina cDNA clone C02011G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289327 ID=CX289327; Name=CX289327; organism=Citrus clementina; type=EST; length=593bp
ACTCAATTTTCTGGAAGAATCTTGCTCCTGTTCACGAAGGAGGTGGCGAG
CCACCACATAGTTCCCTTGGTTGGGCTATTGACACGCATTTTGGTTCTCT
GGAAGCATTGATACAAAAGATGAGTGCTGAGGGTGCAGCTTTGCAGGGCT
CTGGATGGGTGTGGCTTGGTTTGGATACAGAGTTTAAAAGGCTTGTGGTT
GAAACTACTGCAAATCAGGATCCGCTGGTGACTAAAGCCCCAACTCTGGT
TCCTTTGCTTGGTATAGATGTTTGGGAGCATGCATACTACCTACAGTACA
AGAATGTCAAACCAGATTATCTGAAAAACATTTGGAACGTAATGAACTGG
AAGTATGCTAGTGATGTGTATCAGAAAGAATGCCCTTAAGCTTGGAGCTC
TTCCTTGAGCATGGAGTTCTTCGTTTGATCTGGGTTCTCTCTTGGGTTCA
AGAGACGAATATCCTTGCAGCTTTTCACGCTGAAGTGACAATAAAACGAT
ATTTTGCAGATGATGACAGACACCCTTTCTTTTGCAGTGAGTGTTACTTG
TGTATCCCTTATGTGACATCCAAAATAATATTGGGGTTTATGC
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