CX289328

Overview
NameCX289328
Unique NameCX289328
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length540
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289328 vs. ExPASy Swiss-Prot
Match: NLTP_PYRCO (Non-specific lipid-transfer protein OS=Pyrus communis PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.399e-21
Identity = 55/125 (44.00%), Postives = 77/125 (61.60%), Query Frame = 1
Query:    7 MASSVMLMKLVTGCILVLVCLMGSAFVSTKAQVTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 381
            MASS ++ KL    ++V +C+     VS    +TC  V  +L+PCI+YV  GGAV   CCNG++T+   A++T DRQ  C CLK     +S      G A  LPGKCG+N+PY+IS ST+C+ V+
Sbjct:    1 MASSAVI-KLA---LVVALCMA----VSVAHAITCSQVSANLAPCINYVRSGGAVPPACCNGIKTINGLAKTTPDRQAACNCLKNLAGSVS--GVNPGNAESLPGKCGVNVPYKISTSTNCATVK 115          
BLAST of CX289328 vs. ExPASy Swiss-Prot
Match: NLTP4_ARATH (Non-specific lipid-transfer protein 4 OS=Arabidopsis thaliana GN=LTP4 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.399e-21
Identity = 49/108 (45.37%), Postives = 70/108 (64.81%), Query Frame = 1
Query:   64 CLMGSAFV--STKAQVTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 381
            C + + F+  S  A +TC TV + LSPC+ Y+S GG V   CC GV+ L   A++T DRQ  C CL+ A  G++ +     LA+GLPGKCG++IPY IS ST+C+ ++
Sbjct:   10 CFVLTVFIVASVDAAITCGTVASSLSPCLGYLSKGGVVPPPCCAGVKKLNGMAQTTPDRQQACRCLQSAAKGVNPS-----LASGLPGKCGVSIPYPISTSTNCATIK 112          
BLAST of CX289328 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDO (Non-specific lipid-transfer protein 1 OS=Prunus domestica PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.399e-21
Identity = 50/93 (53.76%), Postives = 66/93 (70.97%), Query Frame = 1
Query:  103 VTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 381
            +TC  V ++L+PCI+YV  GGAV   CCNG+R + N AR+TADR+  C CLKQ +SG S        AA LPGKCG+N+PY+IS ST+C+ V+
Sbjct:    1 ITCGQVSSNLAPCINYVKGGGAVPPACCNGIRNVNNLARTTADRRAACNCLKQ-LSG-SIPGVNPNNAAALPGKCGVNVPYKISASTNCATVK 91          
BLAST of CX289328 vs. ExPASy Swiss-Prot
Match: SCA_LILLO (Stigma/stylar cysteine-rich adhesin OS=Lilium longiflorum GN=SCA PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.387e-21
Identity = 48/112 (42.86%), Postives = 67/112 (59.82%), Query Frame = 1
Query:   46 CILVLVCLMGSAFVSTKAQVTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 381
            C L+L+  +    + T + +TC  V +DL+ C+ Y   GG +   CC GVRTL N A++T DRQT C CLK  V+          + AG+PGKCG+NIPY I   TDC++V+
Sbjct:    8 CFLLLLAFL----IGTASAITCGQVDSDLTSCLGYARKGGVIPPGCCAGVRTLNNLAKTTPDRQTACNCLKSLVN--PSLGLNAAIVAGIPGKCGVNIPYPIRMQTDCNKVR 113          
BLAST of CX289328 vs. ExPASy Swiss-Prot
Match: NLTP6_LENCU (Non-specific lipid-transfer protein 6 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.387e-21
Identity = 51/118 (43.22%), Postives = 77/118 (65.25%), Query Frame = 1
Query:   28 MKLVTGCILVLVCLMGSAFVSTKAQVTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 381
            MKL   C+++++C++  A ++  A ++C  V +DLSPC++Y++ G   +  CC GV+ L  AA +T DRQ  C CLK A   I  T+     AA LPGKCG++IPY+IS ST+C+ V+
Sbjct:    5 MKLA--CVVLVMCMVVIAPMAEGA-ISCGAVTSDLSPCLTYLTGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSI--TKLNTNNAAALPGKCGVDIPYKISTSTNCNTVK 117          
BLAST of CX289328 vs. ExPASy Swiss-Prot
Match: NLTP2_ORYSI (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. indica GN=LTP2-A PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.118e-21
Identity = 53/114 (46.49%), Postives = 71/114 (62.28%), Query Frame = 1
Query:   52 LVLVCLMGSAFV-----STKAQVTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRV 378
            LVLV L+ +A +     +T A ++C  V + +SPC+SY   G   +  CC+GVR+L +AA +TADR+T C CLK     IS      G AA +P KCG++IPY ISPS DCS V
Sbjct:    6 LVLVALVAAALLLAGPHTTMAAISCGQVNSAVSPCLSYARGGSGPSAACCSGVRSLNSAASTTADRRTACNCLKNVAGSIS--GLNAGNAASIPSKCGVSIPYTISPSIDCSSV 117          
BLAST of CX289328 vs. ExPASy Swiss-Prot
Match: NLT2A_ORYSJ (Non-specific lipid-transfer protein 2A OS=Oryza sativa subsp. japonica GN=LTP2-A PE=3 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 3.118e-21
Identity = 53/114 (46.49%), Postives = 71/114 (62.28%), Query Frame = 1
Query:   52 LVLVCLMGSAFV-----STKAQVTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRV 378
            LVLV L+ +A +     +T A ++C  V + +SPC+SY   G   +  CC+GVR+L +AA +TADR+T C CLK     IS      G AA +P KCG++IPY ISPS DCS V
Sbjct:    6 LVLVALVAAALLLAGPHTTMAAISCGQVNSAVSPCLSYARGGSGPSAACCSGVRSLNSAASTTADRRTACNCLKNVAGSIS--GLNAGNAASIPSKCGVSIPYTISPSIDCSSV 117          
BLAST of CX289328 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLPN (Non-specific lipid-transfer protein 2 OS=Solanum pennellii GN=LTP2 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 5.318e-21
Identity = 54/110 (49.09%), Postives = 72/110 (65.45%), Query Frame = 1
Query:   55 VLVCLMGSAFVSTKAQ-VTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 381
            VL+C++    V+  A+ +TC  V + L+PC+ Y+   G +   CC GV+ L   A++T DRQT CTCLK A S  S+T   LG AA LP  C +NIPY+ISPSTDCS+VQ
Sbjct:   11 VLLCMV---VVAPHAEALTCGQVTSTLAPCLPYLMNRGPLG-GCCGGVKGLLGQAQTTVDRQTACTCLKSAAS--SFTGLDLGKAASLPSTCSVNIPYKISPSTDCSKVQ 114          
BLAST of CX289328 vs. ExPASy Swiss-Prot
Match: NLTP2_SORBI (Non-specific lipid-transfer protein 2 OS=Sorghum bicolor GN=LTP2 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 6.945e-21
Identity = 50/101 (49.50%), Postives = 66/101 (65.35%), Query Frame = 1
Query:   79 AFVSTKAQVTCRTVVNDLSPCISYV-SYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRV 378
            A  +++A VTC  V + + PC+SY    G   +  CC+GVR+L +AAR+TADR+  C CLK A  GI      +G AA +P KCG++IPY IS STDCSRV
Sbjct:   23 AATTSEAAVTCGQVSSAIGPCLSYARGQGSGPSAGCCSGVRSLNSAARTTADRRAACNCLKNAARGI--RGLNVGKAASIPSKCGVSIPYTISTSTDCSRV 121          
BLAST of CX289328 vs. ExPASy Swiss-Prot
Match: NLTP_SPIOL (Non-specific lipid-transfer protein OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 9.071e-21
Identity = 57/124 (45.97%), Postives = 79/124 (63.71%), Query Frame = 1
Query:    7 MASSVMLMKLVTGCILVLVCLMGSAFVSTKAQVTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRV 378
            MASS ++ KL      VL+C++ +A  + +A +TC  V + L+PCI Y+  GG +   CC G++ L  AA +T DR+T C CLK A + I    Y  G AAGLPG CG++IPY ISPST+C+ V
Sbjct:    1 MASSAVI-KLACA---VLLCIVVAAPYA-EAGITCGMVSSKLAPCIGYLK-GGPLGGGCCGGIKALNAAAATTPDRKTACNCLKSAANAIKGINY--GKAAGLPGMCGVHIPYAISPSTNCNAV 116          
The following BLAST results are available for this feature:
BLAST of CX289328 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
NLTP_PYRCO1.399e-2144.00Non-specific lipid-transfer protein OS=Pyrus commu... [more]
NLTP4_ARATH1.399e-2145.37Non-specific lipid-transfer protein 4 OS=Arabidops... [more]
NLTP1_PRUDO1.399e-2153.76Non-specific lipid-transfer protein 1 OS=Prunus do... [more]
SCA_LILLO2.387e-2142.86Stigma/stylar cysteine-rich adhesin OS=Lilium long... [more]
NLTP6_LENCU2.387e-2143.22Non-specific lipid-transfer protein 6 OS=Lens culi... [more]
NLTP2_ORYSI3.118e-2146.49Non-specific lipid-transfer protein 2 OS=Oryza sat... [more]
NLT2A_ORYSJ3.118e-2146.49Non-specific lipid-transfer protein 2A OS=Oryza sa... [more]
NLTP2_SOLPN5.318e-2149.09Non-specific lipid-transfer protein 2 OS=Solanum p... [more]
NLTP2_SORBI6.945e-2149.50Non-specific lipid-transfer protein 2 OS=Sorghum b... [more]
NLTP_SPIOL9.071e-2145.97Non-specific lipid-transfer protein OS=Spinacia ol... [more]

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Properties
Property NameValue
Genbank descriptionC02011G05SK IF1 Citrus clementina cDNA clone C02011G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289328 ID=CX289328; Name=CX289328; organism=Citrus clementina; type=EST; length=540bp
ATCATAATGGCTAGCTCCGTAATGCTGATGAAACTTGTGACAGGCTGCAT
CTTGGTGCTTGTTTGCTTGATGGGCAGTGCGTTCGTGTCCACCAAAGCAC
AAGTAACATGCCGCACGGTGGTGAATGACTTGTCTCCATGCATATCCTAC
GTGTCATACGGCGGGGCCGTGACGACGAACTGTTGCAACGGAGTGAGGAC
ACTCTACAATGCCGCTCGGTCCACAGCTGACCGTCAGACCGTGTGTACGT
GCTTGAAACAAGCTGTCAGTGGAATCTCGTACACCAGGTACCAGCTCGGA
CTCGCAGCTGGACTTCCCGGCAAATGTGGACTCAACATTCCTTACCAGAT
CAGCCCTTCTACTGACTGCAGCAGGGTGCAGTGAGAATGATGAACTAGTA
GCCATCAGTTATGACGCTGTGTGCTTGGATAATTAAGCATGGGGTGAGAG
AATAAGAGTGCTGCGCTTCTGTTTGATGGTGTGTTAGTGTTAAATAGAAG
TTGTTAGCGTCATCTGGTGGGATTTATGTTGTCTCATGTT
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