CX289331

Overview
NameCX289331
Unique NameCX289331
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length576
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289331 vs. ExPASy Swiss-Prot
Match: SRP54_PYRKO (Signal recognition 54 kDa protein OS=Pyrococcus kodakaraensis GN=srp54 PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.798e-34
Identity = 76/196 (38.78%), Postives = 116/196 (59.18%), Query Frame = 2
Query:    2 DTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVM-QQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQ-VREAEKSLK----IMEAMIE 571
            D+AGR + +K +++E++ +   + P EV+LV+D   GQ+A      F     I   I+TKLDG ++GG ALS    +G PIK +G GER++DLEPF P R   R+LG+GD+   +EK +E+  +QE  EE  +K +   F+  D   Q   + +MG + +++ MIPG+G   P   VR  E+ LK    IM++M E
Sbjct:  189 DSAGRHKEEKGLIEEMRQISEAIKPHEVILVIDGTIGQQAYNQAMAFKEATPIGSIIVTKLDGSAKGGGALSAVAATGAPIKFIGTGERIDDLEPFDPKRFVSRLLGLGDIQGLLEKIEELQKEQEFREEDMEKFLRGKFNLKDMYAQLEAMQKMGPLKQILQMIPGLGYSLPEDAVRVGEEKLKRYKVIMDSMTE 384          
BLAST of CX289331 vs. ExPASy Swiss-Prot
Match: SRP54_META3 (Signal recognition 54 kDa protein OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=srp54 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.063e-33
Identity = 76/194 (39.18%), Postives = 117/194 (60.31%), Query Frame = 2
Query:    2 DTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAIL-TKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE-AEKSLK----IMEAM 565
            DTAGR + +  +++E+K++K   NP E++LV+D   GQ+A      F   +   G+IL TK+DG ++GG ALS     G PIK +G GE+++DLEPF P +   R+LGMGD+ S +EK ++++  +D EE    +M   F  N+   Q   +++MGSM +++ MIPGMG   P    +  E  LK    IM++M
Sbjct:  188 DTAGRHKEESGLLEEMKEMKEKFNPEEIILVIDGTLGQQAKNQAKAFKDAVENIGSILITKMDGSAKGGGALSAVAEIGAPIKFIGTGEKVDDLEPFDPKKFISRLLGMGDLDSLLEKTEDII-DDDTEESLDAMMRGKFTLNELYSQLEAISKMGSMKQLMAMIPGMGTNLPKGAADITEHKLKKYKIIMDSM 380          
BLAST of CX289331 vs. ExPASy Swiss-Prot
Match: SRP54_THEGJ (Signal recognition 54 kDa protein OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=srp54 PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.814e-33
Identity = 75/196 (38.27%), Postives = 116/196 (59.18%), Query Frame = 2
Query:    2 DTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVM-QQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQ-VREAEKSLK----IMEAMIE 571
            DTAGR + +  +++E+K +   + P EV+LV+D   GQ+A      F     I   I+TKLDG ++GG ALS    +G PIK +G GE+++DLEPF P R   R+LG+GD+   +EK +E+  +QE  EE  +K +   F+  D   Q   + +MG + +++ MIPG+G   P + VR  E+ L+    IM++M E
Sbjct:  189 DTAGRHKEESGLIEEMKQISEAIKPHEVILVIDGTIGQQAYHQALAFKEATPIGSIIVTKLDGSAKGGGALSAVAATGAPIKFIGVGEKIDDLEPFDPKRFVSRLLGLGDIQGLLEKIEELQKEQEFKEEDVEKFLRGKFNLKDMYAQLEAMQKMGPLKQILQMIPGLGYSLPDEAVRVGEEKLRRYRIIMDSMTE 384          
BLAST of CX289331 vs. ExPASy Swiss-Prot
Match: SRP54_PYRFU (Signal recognition 54 kDa protein OS=Pyrococcus furiosus GN=srp54 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.094e-33
Identity = 76/196 (38.78%), Postives = 117/196 (59.69%), Query Frame = 2
Query:    2 DTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQ-EDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE-AEKSLK----IMEAMIE 571
            DTAGR + DKA+++E+K +  V++P EV+LV+D   GQ+A      F     I   I+TKLDG ++GG ALS    +G PIK +G GE+++D+EPF P R   R+LG+GD+   +EK +E+ ++ E  EE  ++ +   F   D   Q   + +MG + +++ MIPG+G   P  V    E+ LK    IM++M E
Sbjct:  189 DTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDGSAKGGGALSAVAATGAPIKFIGTGEKIDDIEPFDPPRFVSRLLGLGDIQGLLEKFKELEKEVEIKEEDIERFLRGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGYSLPDDVISIGEERLKKFKVIMDSMTE 384          
BLAST of CX289331 vs. ExPASy Swiss-Prot
Match: SRP54_METVS (Signal recognition 54 kDa protein OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=srp54 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.536e-32
Identity = 73/193 (37.82%), Postives = 116/193 (60.10%), Query Frame = 2
Query:    2 DTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAIL-TKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE-AEKSLKIMEAMIEA 574
            DTAGR + ++++++E+K +K + NP E++LV+D   GQ+A      F   +   G+IL TKLDG ++GG ALS       PIK +G GE +++LE F P +   R+LGMGD+ S +EK ++VM  E  EE    I+   F   +   Q  T+++MG M +++GMIPG G   P +  +  E+ LK  + M+++
Sbjct:  188 DTAGRHKEEESLLEEMKQMKEITNPNEIILVIDGTLGQQAKNQAKAFKDAVSEIGSILVTKLDGSAKGGGALSAVAEINAPIKFIGTGEGVDNLETFDPKKFISRLLGMGDLDSLLEKTEDVM-DESTEESIDSILKGKFTLVELYAQLETISKMGPMKQIMGMIPGFGGNMPKEAAQLTEQKLKRYKIMMDS 379          
BLAST of CX289331 vs. ExPASy Swiss-Prot
Match: SRP54_METST (Signal recognition 54 kDa protein OS=Methanosphaera stadtmanae (strain DSM 3091) GN=srp54 PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.006e-32
Identity = 68/173 (39.31%), Postives = 106/173 (61.27%), Query Frame = 2
Query:    2 DTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPA 520
            DTAGR + +K ++DE+ ++ +++ P EV+LV+D   GQ+A +   TF     I   I++KLDG ++GG ALS       PIK +G GER++D E F P+R   R+LGMGD+ + +EKA EV  ++  +EM   I+S  F   D   Q   + +MG + +++ +IPG+G   PA
Sbjct:  187 DTAGRHKEEKDLLDEMAELSQIVQPDEVILVIDGTIGQQARSQAETFKKTTDIGSIIVSKLDGSAKGGGALSAVAEIRAPIKFIGTGERVDDFEAFDPERFISRLLGMGDLDTLIEKAAEVTSEKSDKEMIDSIISGKFTLKDMENQLEMMNKMGPIQQIMKLIPGLGNQLPA 359          
BLAST of CX289331 vs. ExPASy Swiss-Prot
Match: SRP54_METM7 (Signal recognition 54 kDa protein OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=srp54 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 5.835e-32
Identity = 73/193 (37.82%), Postives = 115/193 (59.59%), Query Frame = 2
Query:    2 DTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAIL-TKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE-AEKSLKIMEAMIEA 574
            DTAGR + ++ ++ E++++K + NPTE++LV+D   GQ+A      F   +   G+IL TKLDG ++GG ALS       PIK +G GE +++LE F P +   RILGMGD+ S +EK +++M  E  EE    I+   F   +   Q  T+++MG M +++ MIPGMG   P +  +  E  LK  + M+++
Sbjct:  188 DTAGRHKEEEGLLAEMREMKDLTNPTEIILVIDGTLGQQAKNQAKAFKESVSEIGSILVTKLDGSAKGGGALSAVAEINAPIKFIGTGEGVDNLEQFDPKKFISRILGMGDLDSLLEKTEDIM-DESTEESIDSILKGKFTLIELYAQLETISKMGPMKQILSMIPGMGGNLPKEAAQLTEDKLKRYKIMMDS 379          
BLAST of CX289331 vs. ExPASy Swiss-Prot
Match: SRP54_METMP (Signal recognition 54 kDa protein OS=Methanococcus maripaludis GN=srp54 PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.300e-31
Identity = 76/190 (40.00%), Postives = 114/190 (60.00%), Query Frame = 2
Query:    2 DTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAIL-TKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITP---AQVREAE-KSLKIM 556
            DTAGR + ++ ++ E+K++K + NP E++LV+D   GQ+A      F   +   G+IL TKLDG ++GG ALS       PIK +G GE +++LE F P +   RILG+GD+ S +EK +++M  E  EE    I+   F   +   Q  T+++MG M +++ MIPGMG   P   AQ+ EA+ K  KIM
Sbjct:  188 DTAGRHKEEEGLLAEMKEMKDLTNPNEIILVIDGTLGQQAKNQAKAFKESVSEIGSILVTKLDGSAKGGGALSAVAEINAPIKFIGTGEGVDNLEQFDPKKFISRILGLGDLDSLLEKTEDIM-DESTEESIDSILKGKFTLIELYAQLETISKMGPMKQILSMIPGMGGNMPKEAAQLTEAKLKRYKIM 376          
BLAST of CX289331 vs. ExPASy Swiss-Prot
Match: SRP54_METM6 (Signal recognition 54 kDa protein OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=srp54 PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.300e-31
Identity = 73/193 (37.82%), Postives = 114/193 (59.07%), Query Frame = 2
Query:    2 DTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAIL-TKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE-AEKSLKIMEAMIEA 574
            DTAGR + ++ ++ E+K++K + NP E++LV+D   GQ+A      F   +   G+IL TKLDG ++GG ALS       PIK +G GE +++LE F P +   RILG GD+ S +EK +++M  E AEE    I+   F   +   Q  T+++MG M +++ MIPGMG   P +  +  E  LK  + M+++
Sbjct:  188 DTAGRHKEEEGLLAEMKEMKDLTNPNEIILVIDGTLGQQAKNQAKAFKDSVSEIGSILVTKLDGSAKGGGALSAVAEINAPIKFIGTGEGVDNLEQFDPKKFISRILGFGDLDSLLEKTEDIM-DESAEESIDSILKGKFTLIELYAQLETISKMGPMKQILSMIPGMGGNMPKEAAQLTEDKLKRYKIMMDS 379          
BLAST of CX289331 vs. ExPASy Swiss-Prot
Match: SRP54_THEAC (Signal recognition 54 kDa protein OS=Thermoplasma acidophilum GN=srp54 PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.698e-31
Identity = 70/197 (35.53%), Postives = 115/197 (58.38%), Query Frame = 2
Query:    2 DTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEV-MQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVI-----GMIPGMGKITPAQVREAEKSLKIMEAMIEA 574
            DT+GR  +D  + DE++ +K  + P EVL+++DA  GQ+A      FN  IG+TG I+TK+DG ++GG ALS       PI  +G GE M+DLE F P +   R+LG+GD+ S  E  QE  + +E+A+E  +K+M+  F+  D        ++ G M +++       IPG  KI  ++++ AE  L++   ++++
Sbjct:  184 DTSGRDSMDAELFDEIRRIKEAVAPDEVLMIIDATMGQQAGPEAKAFNDAIGVTGIIITKMDGTAKGGGALSAVAEIHVPIYFIGTGEHMDDLEVFDPKKFLSRLLGLGDLESLFETVQEADITEEEAQESFEKLMTGKFNLKDMYDVWEKFSKPGLMKKLVDALPLARIPGSQKIDDSKIQSAEDKLRMYRIIMDS 380          
The following BLAST results are available for this feature:
BLAST of CX289331 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
SRP54_PYRKO2.798e-3438.78Signal recognition 54 kDa protein OS=Pyrococcus ko... [more]
SRP54_META31.063e-3339.18Signal recognition 54 kDa protein OS=Methanococcus... [more]
SRP54_THEGJ1.814e-3338.27Signal recognition 54 kDa protein OS=Thermococcus ... [more]
SRP54_PYRFU3.094e-3338.78Signal recognition 54 kDa protein OS=Pyrococcus fu... [more]
SRP54_METVS1.536e-3237.82Signal recognition 54 kDa protein OS=Methanococcus... [more]
SRP54_METST2.006e-3239.31Signal recognition 54 kDa protein OS=Methanosphaer... [more]
SRP54_METM75.835e-3237.82Signal recognition 54 kDa protein OS=Methanococcus... [more]
SRP54_METMP1.300e-3140.00Signal recognition 54 kDa protein OS=Methanococcus... [more]
SRP54_METM61.300e-3137.82Signal recognition 54 kDa protein OS=Methanococcus... [more]
SRP54_THEAC1.698e-3135.53Signal recognition 54 kDa protein OS=Thermoplasma ... [more]

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Properties
Property NameValue
Genbank descriptionC02011G08SK IF1 Citrus clementina cDNA clone C02011G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289331 ID=CX289331; Name=CX289331; organism=Citrus clementina; type=EST; length=576bp
AGATACTGCTGGAAGGCTTCAGATAGATAAAGCAATGATGGATGAGTTGA
AAGATGTGAAGCGTGTACTGAATCCTACTGAGGTTTTGCTAGTTGTGGAT
GCAATGACTGGCCAAGAAGCTGCAGCCCTGGTCACAACATTCAACATTGA
GATAGGGATTACAGGTGCCATTTTGACAAAGTTAGATGGAGATTCTAGGG
GTGGTGCGGCTTTGAGTGTTAAAGAGGTATCAGGAAAGCCAATCAAACTT
GTTGGACGAGGAGAACGAATGGAGGACCTTGAACCTTTCTACCCAGATCG
CATGGCTGGACGTATCTTAGGAATGGGAGATGTTCTCTCATTTGTAGAGA
AGGCACAAGAAGTTATGCAACAAGAAGATGCTGAAGAAATGCAAAAGAAG
ATAATGAGTGCGAATTTTGACTTCAATGATTTCTTAAAGCAAACCCGTAC
TGTTGCACGTATGGGTTCGATGAGTCGTGTTATAGGAATGATCCCTGGAA
TGGGGAAGATTACTCCTGCACAAGTTCGAGAAGCAGAGAAGAGTTTAAAA
ATAATGGAAGCAATGATCGAAGCAAT
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