CX289331
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX289331 vs. ExPASy Swiss-Prot
Match: SRP54_PYRKO (Signal recognition 54 kDa protein OS=Pyrococcus kodakaraensis GN=srp54 PE=3 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 2.798e-34 Identity = 76/196 (38.78%), Postives = 116/196 (59.18%), Query Frame = 2 Query: 2 DTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVM-QQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQ-VREAEKSLK----IMEAMIE 571 D+AGR + +K +++E++ + + P EV+LV+D GQ+A F I I+TKLDG ++GG ALS +G PIK +G GER++DLEPF P R R+LG+GD+ +EK +E+ +QE EE +K + F+ D Q + +MG + +++ MIPG+G P VR E+ LK IM++M E Sbjct: 189 DSAGRHKEEKGLIEEMRQISEAIKPHEVILVIDGTIGQQAYNQAMAFKEATPIGSIIVTKLDGSAKGGGALSAVAATGAPIKFIGTGERIDDLEPFDPKRFVSRLLGLGDIQGLLEKIEELQKEQEFREEDMEKFLRGKFNLKDMYAQLEAMQKMGPLKQILQMIPGLGYSLPEDAVRVGEEKLKRYKVIMDSMTE 384
BLAST of CX289331 vs. ExPASy Swiss-Prot
Match: SRP54_META3 (Signal recognition 54 kDa protein OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=srp54 PE=3 SV=1) HSP 1 Score: 142.895 bits (359), Expect = 1.063e-33 Identity = 76/194 (39.18%), Postives = 117/194 (60.31%), Query Frame = 2 Query: 2 DTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAIL-TKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE-AEKSLK----IMEAM 565 DTAGR + + +++E+K++K NP E++LV+D GQ+A F + G+IL TK+DG ++GG ALS G PIK +G GE+++DLEPF P + R+LGMGD+ S +EK ++++ +D EE +M F N+ Q +++MGSM +++ MIPGMG P + E LK IM++M Sbjct: 188 DTAGRHKEESGLLEEMKEMKEKFNPEEIILVIDGTLGQQAKNQAKAFKDAVENIGSILITKMDGSAKGGGALSAVAEIGAPIKFIGTGEKVDDLEPFDPKKFISRLLGMGDLDSLLEKTEDII-DDDTEESLDAMMRGKFTLNELYSQLEAISKMGSMKQLMAMIPGMGTNLPKGAADITEHKLKKYKIIMDSM 380
BLAST of CX289331 vs. ExPASy Swiss-Prot
Match: SRP54_THEGJ (Signal recognition 54 kDa protein OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=srp54 PE=3 SV=1) HSP 1 Score: 142.124 bits (357), Expect = 1.814e-33 Identity = 75/196 (38.27%), Postives = 116/196 (59.18%), Query Frame = 2 Query: 2 DTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVM-QQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQ-VREAEKSLK----IMEAMIE 571 DTAGR + + +++E+K + + P EV+LV+D GQ+A F I I+TKLDG ++GG ALS +G PIK +G GE+++DLEPF P R R+LG+GD+ +EK +E+ +QE EE +K + F+ D Q + +MG + +++ MIPG+G P + VR E+ L+ IM++M E Sbjct: 189 DTAGRHKEESGLIEEMKQISEAIKPHEVILVIDGTIGQQAYHQALAFKEATPIGSIIVTKLDGSAKGGGALSAVAATGAPIKFIGVGEKIDDLEPFDPKRFVSRLLGLGDIQGLLEKIEELQKEQEFKEEDVEKFLRGKFNLKDMYAQLEAMQKMGPLKQILQMIPGLGYSLPDEAVRVGEEKLRRYRIIMDSMTE 384
BLAST of CX289331 vs. ExPASy Swiss-Prot
Match: SRP54_PYRFU (Signal recognition 54 kDa protein OS=Pyrococcus furiosus GN=srp54 PE=1 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 3.094e-33 Identity = 76/196 (38.78%), Postives = 117/196 (59.69%), Query Frame = 2 Query: 2 DTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQ-EDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE-AEKSLK----IMEAMIE 571 DTAGR + DKA+++E+K + V++P EV+LV+D GQ+A F I I+TKLDG ++GG ALS +G PIK +G GE+++D+EPF P R R+LG+GD+ +EK +E+ ++ E EE ++ + F D Q + +MG + +++ MIPG+G P V E+ LK IM++M E Sbjct: 189 DTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDGSAKGGGALSAVAATGAPIKFIGTGEKIDDIEPFDPPRFVSRLLGLGDIQGLLEKFKELEKEVEIKEEDIERFLRGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGYSLPDDVISIGEERLKKFKVIMDSMTE 384
BLAST of CX289331 vs. ExPASy Swiss-Prot
Match: SRP54_METVS (Signal recognition 54 kDa protein OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=srp54 PE=3 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 1.536e-32 Identity = 73/193 (37.82%), Postives = 116/193 (60.10%), Query Frame = 2 Query: 2 DTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAIL-TKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE-AEKSLKIMEAMIEA 574 DTAGR + ++++++E+K +K + NP E++LV+D GQ+A F + G+IL TKLDG ++GG ALS PIK +G GE +++LE F P + R+LGMGD+ S +EK ++VM E EE I+ F + Q T+++MG M +++GMIPG G P + + E+ LK + M+++ Sbjct: 188 DTAGRHKEEESLLEEMKQMKEITNPNEIILVIDGTLGQQAKNQAKAFKDAVSEIGSILVTKLDGSAKGGGALSAVAEINAPIKFIGTGEGVDNLETFDPKKFISRLLGMGDLDSLLEKTEDVM-DESTEESIDSILKGKFTLVELYAQLETISKMGPMKQIMGMIPGFGGNMPKEAAQLTEQKLKRYKIMMDS 379
BLAST of CX289331 vs. ExPASy Swiss-Prot
Match: SRP54_METST (Signal recognition 54 kDa protein OS=Methanosphaera stadtmanae (strain DSM 3091) GN=srp54 PE=3 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 2.006e-32 Identity = 68/173 (39.31%), Postives = 106/173 (61.27%), Query Frame = 2 Query: 2 DTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPA 520 DTAGR + +K ++DE+ ++ +++ P EV+LV+D GQ+A + TF I I++KLDG ++GG ALS PIK +G GER++D E F P+R R+LGMGD+ + +EKA EV ++ +EM I+S F D Q + +MG + +++ +IPG+G PA Sbjct: 187 DTAGRHKEEKDLLDEMAELSQIVQPDEVILVIDGTIGQQARSQAETFKKTTDIGSIIVSKLDGSAKGGGALSAVAEIRAPIKFIGTGERVDDFEAFDPERFISRLLGMGDLDTLIEKAAEVTSEKSDKEMIDSIISGKFTLKDMENQLEMMNKMGPIQQIMKLIPGLGNQLPA 359
BLAST of CX289331 vs. ExPASy Swiss-Prot
Match: SRP54_METM7 (Signal recognition 54 kDa protein OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=srp54 PE=3 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 5.835e-32 Identity = 73/193 (37.82%), Postives = 115/193 (59.59%), Query Frame = 2 Query: 2 DTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAIL-TKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE-AEKSLKIMEAMIEA 574 DTAGR + ++ ++ E++++K + NPTE++LV+D GQ+A F + G+IL TKLDG ++GG ALS PIK +G GE +++LE F P + RILGMGD+ S +EK +++M E EE I+ F + Q T+++MG M +++ MIPGMG P + + E LK + M+++ Sbjct: 188 DTAGRHKEEEGLLAEMREMKDLTNPTEIILVIDGTLGQQAKNQAKAFKESVSEIGSILVTKLDGSAKGGGALSAVAEINAPIKFIGTGEGVDNLEQFDPKKFISRILGMGDLDSLLEKTEDIM-DESTEESIDSILKGKFTLIELYAQLETISKMGPMKQILSMIPGMGGNLPKEAAQLTEDKLKRYKIMMDS 379
BLAST of CX289331 vs. ExPASy Swiss-Prot
Match: SRP54_METMP (Signal recognition 54 kDa protein OS=Methanococcus maripaludis GN=srp54 PE=3 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 1.300e-31 Identity = 76/190 (40.00%), Postives = 114/190 (60.00%), Query Frame = 2 Query: 2 DTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAIL-TKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITP---AQVREAE-KSLKIM 556 DTAGR + ++ ++ E+K++K + NP E++LV+D GQ+A F + G+IL TKLDG ++GG ALS PIK +G GE +++LE F P + RILG+GD+ S +EK +++M E EE I+ F + Q T+++MG M +++ MIPGMG P AQ+ EA+ K KIM Sbjct: 188 DTAGRHKEEEGLLAEMKEMKDLTNPNEIILVIDGTLGQQAKNQAKAFKESVSEIGSILVTKLDGSAKGGGALSAVAEINAPIKFIGTGEGVDNLEQFDPKKFISRILGLGDLDSLLEKTEDIM-DESTEESIDSILKGKFTLIELYAQLETISKMGPMKQILSMIPGMGGNMPKEAAQLTEAKLKRYKIM 376
BLAST of CX289331 vs. ExPASy Swiss-Prot
Match: SRP54_METM6 (Signal recognition 54 kDa protein OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=srp54 PE=3 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 1.300e-31 Identity = 73/193 (37.82%), Postives = 114/193 (59.07%), Query Frame = 2 Query: 2 DTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAIL-TKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE-AEKSLKIMEAMIEA 574 DTAGR + ++ ++ E+K++K + NP E++LV+D GQ+A F + G+IL TKLDG ++GG ALS PIK +G GE +++LE F P + RILG GD+ S +EK +++M E AEE I+ F + Q T+++MG M +++ MIPGMG P + + E LK + M+++ Sbjct: 188 DTAGRHKEEEGLLAEMKEMKDLTNPNEIILVIDGTLGQQAKNQAKAFKDSVSEIGSILVTKLDGSAKGGGALSAVAEINAPIKFIGTGEGVDNLEQFDPKKFISRILGFGDLDSLLEKTEDIM-DESAEESIDSILKGKFTLIELYAQLETISKMGPMKQILSMIPGMGGNMPKEAAQLTEDKLKRYKIMMDS 379
BLAST of CX289331 vs. ExPASy Swiss-Prot
Match: SRP54_THEAC (Signal recognition 54 kDa protein OS=Thermoplasma acidophilum GN=srp54 PE=3 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 1.698e-31 Identity = 70/197 (35.53%), Postives = 115/197 (58.38%), Query Frame = 2 Query: 2 DTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEV-MQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVI-----GMIPGMGKITPAQVREAEKSLKIMEAMIEA 574 DT+GR +D + DE++ +K + P EVL+++DA GQ+A FN IG+TG I+TK+DG ++GG ALS PI +G GE M+DLE F P + R+LG+GD+ S E QE + +E+A+E +K+M+ F+ D ++ G M +++ IPG KI ++++ AE L++ ++++ Sbjct: 184 DTSGRDSMDAELFDEIRRIKEAVAPDEVLMIIDATMGQQAGPEAKAFNDAIGVTGIIITKMDGTAKGGGALSAVAEIHVPIYFIGTGEHMDDLEVFDPKKFLSRLLGLGDLESLFETVQEADITEEEAQESFEKLMTGKFNLKDMYDVWEKFSKPGLMKKLVDALPLARIPGSQKIDDSKIQSAEDKLRMYRIIMDS 380 The following BLAST results are available for this feature:
BLAST of CX289331 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 129
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX289331 ID=CX289331; Name=CX289331; organism=Citrus clementina; type=EST; length=576bpback to top |