CX289331
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX289331 vs. ExPASy Swiss-Prot
Match: SRP54_METM5 (Signal recognition 54 kDa protein OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=srp54 PE=3 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 1.698e-31 Identity = 72/193 (37.31%), Postives = 115/193 (59.59%), Query Frame = 2 Query: 2 DTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAIL-TKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE-AEKSLKIMEAMIEA 574 DTAGR + +++++ E+K++K + NP E++LV+D GQ+A F + G+IL TKLDG ++GG ALS PIK +G GE +++LE F P + RILG+GD+ S +EK +++M E EE I+ F + Q T+++MG M +++ MIPGMG P + + E LK + M+++ Sbjct: 188 DTAGRHKEEESLLAEMKEMKDLTNPNEIILVIDGTLGQQAKNQAKAFKESVSEIGSILVTKLDGSAKGGGALSAVAEINAPIKFIGTGEGVDNLEQFDPKKFISRILGLGDLDSLLEKTEDIM-DESTEESIDSILKGKFTLIELYAQLETISKMGPMKQILSMIPGMGGNLPKEAAQLTEDKLKRYKIMMDS 379
BLAST of CX289331 vs. ExPASy Swiss-Prot
Match: SRP54_METBU (Signal recognition 54 kDa protein OS=Methanococcoides burtonii (strain DSM 6242) GN=srp54 PE=3 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 2.896e-31 Identity = 71/197 (36.04%), Postives = 114/197 (57.87%), Query Frame = 2 Query: 2 DTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIP--GMG-KITPAQVREAEKSLK----IMEAMIE 571 DTAGR ++ ++DE++ + + P LLV+D GQ+A+ FN +GI+G +++KLDG ++GG ALS + I +G GE +DLE F PDR R+LGMGD+ S +EKA+E + +ED + + +M F D Q + +MG M +++ M+P GMG K++ + E +K +M++M E Sbjct: 184 DTAGRHSLEADLIDEMEQIHEIAQPDYKLLVLDGAIGQQASEQARAFNDSVGISGVVISKLDGTAKGGGALSAVSETNSAIAFIGVGETPDDLEKFEPDRFISRLLGMGDIKSLIEKAEETLSEEDID--MEAMMRGRFTLKDMYSQLEAMNKMGPMKQIMQMLPLGGMGAKLSDDAYKVTEDKMKGYRVLMDSMTE 378
BLAST of CX289331 vs. ExPASy Swiss-Prot
Match: SRP54_METS3 (Signal recognition 54 kDa protein OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=srp54 PE=3 SV=2) HSP 1 Score: 134.42 bits (337), Expect = 3.782e-31 Identity = 65/168 (38.69%), Postives = 102/168 (60.71%), Query Frame = 2 Query: 2 DTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMG 505 DTAGR + ++ ++ E+ + ++ PTE +LV+D GQ+A F+ + I+TKLDG ++GG A+S +G PIK +G GER++D E F P R R+LGMGD+ + +EKA++ + ++ AE+ K +MS F D Q + MG M +V+ MIPG+G Sbjct: 186 DTAGRHKQEEDLIAEMDTLDDIIQPTESILVIDGTIGQQAGEQAKAFSQATDVGSIIITKLDGSAKGGGAMSAVAETGAPIKFIGTGERIDDFELFDPARFISRLLGMGDIQTLIEKAEDSIDEDMAEKTMKNMMSGKFTLVDMKNQFEMMNSMGPMQQVLSMIPGLG 353
BLAST of CX289331 vs. ExPASy Swiss-Prot
Match: SRP54_METKA (Signal recognition 54 kDa protein OS=Methanopyrus kandleri GN=srp54 PE=3 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 6.451e-31 Identity = 69/196 (35.20%), Postives = 116/196 (59.18%), Query Frame = 2 Query: 2 DTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMG------KITPAQVREAEKSLKIMEAMIE 571 DTAGR ++ + ++DEL+++ + P EVLLV+DA GQ+A F+ + +TG ++TKLD ++GG ALS +G PIK VG GER++DLE F P R+LG+GD+ + + +E++++E+ E ++ F D +Q +++MG + +++ +PGMG KI+ +K IM++M E Sbjct: 188 DTAGRDRLSEDLIDELREMAERIEPHEVLLVLDATVGQKAGDHAEAFHEAVQLTGVVITKLDTAAKGGGALSAVARTGAPIKFVGTGERVDDLEEFNPRSFVARLLGIGDIDELLRRTEEMLEEEEKAE---DVLEGEFTLKDLYEQLEALSKMGPVDKLLQYVPGMGGGRNVRKISQITEERLKKYKVIMDSMTE 380
BLAST of CX289331 vs. ExPASy Swiss-Prot
Match: SRP54_METBF (Signal recognition 54 kDa protein OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=srp54 PE=3 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 1.877e-30 Identity = 73/200 (36.50%), Postives = 112/200 (56.00%), Query Frame = 2 Query: 2 DTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIP-GMG-----KITPAQVREAEKSLK----IMEAMIE 571 DTAGR ++ +++E++ + V P +V+DA GQ+A+ FN +GITG I+TKLDG ++GG ALS + PI +G GE ED E F DR R+LGMGD+ S +EKA+E + +ED + +M F D KQ + +MG + +++ M+P GMG K++ + +K IM++M E Sbjct: 184 DTAGRHALEADLIEEMEQINAVAKPDHKFMVLDAGIGQQASQQAHAFNDSVGITGVIITKLDGTAKGGGALSAVSETKAPIAFIGVGETPEDFEKFEADRFISRLLGMGDLKSLMEKAEETLSEEDVN--VEALMQGRFTLKDMYKQLEAMNKMGPLKQIMSMLPLGMGGMGGVKLSDEMFQATSDKMKNYKTIMDSMTE 381
BLAST of CX289331 vs. ExPASy Swiss-Prot
Match: SRP54_UNCMA (Signal recognition 54 kDa protein OS=Uncultured methanogenic archaeon RC-I GN=srp54 PE=3 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 2.452e-30 Identity = 75/198 (37.88%), Postives = 114/198 (57.58%), Query Frame = 2 Query: 2 DTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIP--GM-GKITPAQVREAEKSLK----IMEAMIEA 574 DTAGR ++ ++ E+KD+ + LLV+DA GQ+A+ FN IGITG ++TKLDG ++GG ALS + I +G GE +D+E F PD R+LGMGD+ + VE+A EV+Q++D +K+M F ND Q + +MG + +++ M+P G+ G IT + + LK IM++M A Sbjct: 184 DTAGRHALETDLIQEMKDIYGLTKFDHKLLVLDAAIGQQASEQARAFNDAIGITGVVITKLDGTAKGGGALSAVSDTNTSIAFIGVGETPDDMERFDPDGFISRLLGMGDLRALVERANEVLQKDDVN--VEKMMQGKFTLNDMYDQLEAINKMGPLKQIMSMLPLGGLGGNITDDMYKMTQDKLKGYKVIMDSMTAA 379
BLAST of CX289331 vs. ExPASy Swiss-Prot
Match: SRP54_PYRAB (Signal recognition 54 kDa protein OS=Pyrococcus abyssi GN=srp54 PE=3 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 2.452e-30 Identity = 70/196 (35.71%), Postives = 111/196 (56.63%), Query Frame = 2 Query: 2 DTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQ-EDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQV-----REAEKSLKIMEAMIE 571 DTAGR + +K +++E++ + + P EV+LV+D GQ+A F I I+TKLD ++GG ALS +G PIK +G GE+++DLEPF P R R+LG+GD+ +EK +E+ ++ E EE ++ + F D Q + +MG + +++ MIPG+G P +V K IM++M E Sbjct: 189 DTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGDIQGLLEKFKELEKEVEFTEEDLERFLKGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGYSLPDEVISVGEERLRKFKVIMDSMTE 384
BLAST of CX289331 vs. ExPASy Swiss-Prot
Match: SRP54_METTP (Signal recognition 54 kDa protein OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=srp54 PE=3 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 4.182e-30 Identity = 71/193 (36.79%), Postives = 109/193 (56.48%), Query Frame = 2 Query: 2 DTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIP--GMGKITPAQVREAEKSLKIMEAMIEA 574 DTAGR ++ ++ E+KD+ V+N LLV+DA GQ+A+ FN +GITG I+TKLDG ++GG ALS + + +G GE DLE F DR R+LGMGD+ +EKAQEV + D + +M F D KQ + +MG + +++ M+P G+G + ++K ++ + +EA Sbjct: 184 DTAGRHALESDLIQEMKDIHAVVNADHKLLVMDAAIGQQASEQARAFNEAVGITGVIITKLDGTAKGGGALSAVAETKTSVAFIGVGETASDLEKFEADRFISRLLGMGDIKGLIEKAQEVQIESDVD--VDAMMKGKFTLKDMYKQLEAMNKMGPLKQIMQMLPFGGIG------IELSDKEYQVTKERLEA 368
BLAST of CX289331 vs. ExPASy Swiss-Prot
Match: SRP54_PYRAR (Signal recognition 54 kDa protein OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=srp54 PE=3 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 5.462e-30 Identity = 72/193 (37.31%), Postives = 119/193 (61.66%), Query Frame = 2 Query: 2 DTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPG--MGKITPAQVREAEKSLKIMEAMIEA 574 DTAGR + ++A++ E+K + +NP EV+LVVDA G+ AAA F + I I+TK+D +RGG AL+ +G +K +G GE +E+LEPF P + R+LGMGD+ + +EK + V ++ EE+ ++I S D F KQ ++ ++G +S+V ++PG KI+ Q+ ++K+LK A++ + Sbjct: 186 DTAGRHRNEEALLQEVKAIYDAVNPDEVVLVVDATVGKLAAAQAEAFMKYLPIHTVIITKMDSTARGGGALAAVAKTGARVKFIGVGEDVEELEPFNPRKFVARLLGMGDLDALLEKIKAVFEE---EEVLEEIESGRLDLLTFKKQIDSLMKLGPLSKVFQLLPGGLAAKISEEQIELSQKNLKKWRAILSS 375
BLAST of CX289331 vs. ExPASy Swiss-Prot
Match: SRP54_METAC (Signal recognition 54 kDa protein OS=Methanosarcina acetivorans GN=srp54 PE=3 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 5.462e-30 Identity = 73/197 (37.06%), Postives = 111/197 (56.35%), Query Frame = 2 Query: 2 DTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIP-GMG--KITPAQVREAEKSLK----IMEAMIE 571 DTAGR ++ +++E++ + V P +V+DA GQ+A+ FN +GITG I+TKLDG ++GG ALS + PI +G GE ED E F DR R+LGMGD+ S +EKA+E + +ED + +M F D KQ + +MG + +++ M+P GMG K + + +K IM++M E Sbjct: 184 DTAGRHALEADLIEEMERIHAVAKPDHKFMVLDAGIGQQASQQAHAFNDSVGITGVIITKLDGTAKGGGALSAVSETKAPIAFIGVGETPEDFEKFEADRFISRLLGMGDLKSLMEKAEESLSEEDVN--VEALMQGRFTLKDMYKQLEAMNKMGPLKQIMSMLPMGMGGMKFSDEMFQATSDKMKNYKVIMDSMTE 378 The following BLAST results are available for this feature:
BLAST of CX289331 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 129
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Sequences
The
following sequences are available for this feature:
EST sequence >CX289331 ID=CX289331; Name=CX289331; organism=Citrus clementina; type=EST; length=576bpback to top |