CX289331

Overview
NameCX289331
Unique NameCX289331
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length576
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289331 vs. ExPASy Swiss-Prot
Match: SRP54_METM5 (Signal recognition 54 kDa protein OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=srp54 PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.698e-31
Identity = 72/193 (37.31%), Postives = 115/193 (59.59%), Query Frame = 2
Query:    2 DTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAIL-TKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE-AEKSLKIMEAMIEA 574
            DTAGR + +++++ E+K++K + NP E++LV+D   GQ+A      F   +   G+IL TKLDG ++GG ALS       PIK +G GE +++LE F P +   RILG+GD+ S +EK +++M  E  EE    I+   F   +   Q  T+++MG M +++ MIPGMG   P +  +  E  LK  + M+++
Sbjct:  188 DTAGRHKEEESLLAEMKEMKDLTNPNEIILVIDGTLGQQAKNQAKAFKESVSEIGSILVTKLDGSAKGGGALSAVAEINAPIKFIGTGEGVDNLEQFDPKKFISRILGLGDLDSLLEKTEDIM-DESTEESIDSILKGKFTLIELYAQLETISKMGPMKQILSMIPGMGGNLPKEAAQLTEDKLKRYKIMMDS 379          
BLAST of CX289331 vs. ExPASy Swiss-Prot
Match: SRP54_METBU (Signal recognition 54 kDa protein OS=Methanococcoides burtonii (strain DSM 6242) GN=srp54 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.896e-31
Identity = 71/197 (36.04%), Postives = 114/197 (57.87%), Query Frame = 2
Query:    2 DTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIP--GMG-KITPAQVREAEKSLK----IMEAMIE 571
            DTAGR  ++  ++DE++ +  +  P   LLV+D   GQ+A+     FN  +GI+G +++KLDG ++GG ALS    +   I  +G GE  +DLE F PDR   R+LGMGD+ S +EKA+E + +ED +   + +M   F   D   Q   + +MG M +++ M+P  GMG K++    +  E  +K    +M++M E
Sbjct:  184 DTAGRHSLEADLIDEMEQIHEIAQPDYKLLVLDGAIGQQASEQARAFNDSVGISGVVISKLDGTAKGGGALSAVSETNSAIAFIGVGETPDDLEKFEPDRFISRLLGMGDIKSLIEKAEETLSEEDID--MEAMMRGRFTLKDMYSQLEAMNKMGPMKQIMQMLPLGGMGAKLSDDAYKVTEDKMKGYRVLMDSMTE 378          
BLAST of CX289331 vs. ExPASy Swiss-Prot
Match: SRP54_METS3 (Signal recognition 54 kDa protein OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=srp54 PE=3 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 3.782e-31
Identity = 65/168 (38.69%), Postives = 102/168 (60.71%), Query Frame = 2
Query:    2 DTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMG 505
            DTAGR + ++ ++ E+  +  ++ PTE +LV+D   GQ+A      F+    +   I+TKLDG ++GG A+S    +G PIK +G GER++D E F P R   R+LGMGD+ + +EKA++ + ++ AE+  K +MS  F   D   Q   +  MG M +V+ MIPG+G
Sbjct:  186 DTAGRHKQEEDLIAEMDTLDDIIQPTESILVIDGTIGQQAGEQAKAFSQATDVGSIIITKLDGSAKGGGAMSAVAETGAPIKFIGTGERIDDFELFDPARFISRLLGMGDIQTLIEKAEDSIDEDMAEKTMKNMMSGKFTLVDMKNQFEMMNSMGPMQQVLSMIPGLG 353          
BLAST of CX289331 vs. ExPASy Swiss-Prot
Match: SRP54_METKA (Signal recognition 54 kDa protein OS=Methanopyrus kandleri GN=srp54 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 6.451e-31
Identity = 69/196 (35.20%), Postives = 116/196 (59.18%), Query Frame = 2
Query:    2 DTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMG------KITPAQVREAEKSLKIMEAMIE 571
            DTAGR ++ + ++DEL+++   + P EVLLV+DA  GQ+A      F+  + +TG ++TKLD  ++GG ALS    +G PIK VG GER++DLE F P     R+LG+GD+   + + +E++++E+  E    ++   F   D  +Q   +++MG + +++  +PGMG      KI+       +K   IM++M E
Sbjct:  188 DTAGRDRLSEDLIDELREMAERIEPHEVLLVLDATVGQKAGDHAEAFHEAVQLTGVVITKLDTAAKGGGALSAVARTGAPIKFVGTGERVDDLEEFNPRSFVARLLGIGDIDELLRRTEEMLEEEEKAE---DVLEGEFTLKDLYEQLEALSKMGPVDKLLQYVPGMGGGRNVRKISQITEERLKKYKVIMDSMTE 380          
BLAST of CX289331 vs. ExPASy Swiss-Prot
Match: SRP54_METBF (Signal recognition 54 kDa protein OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=srp54 PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.877e-30
Identity = 73/200 (36.50%), Postives = 112/200 (56.00%), Query Frame = 2
Query:    2 DTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIP-GMG-----KITPAQVREAEKSLK----IMEAMIE 571
            DTAGR  ++  +++E++ +  V  P    +V+DA  GQ+A+     FN  +GITG I+TKLDG ++GG ALS    +  PI  +G GE  ED E F  DR   R+LGMGD+ S +EKA+E + +ED     + +M   F   D  KQ   + +MG + +++ M+P GMG     K++    +     +K    IM++M E
Sbjct:  184 DTAGRHALEADLIEEMEQINAVAKPDHKFMVLDAGIGQQASQQAHAFNDSVGITGVIITKLDGTAKGGGALSAVSETKAPIAFIGVGETPEDFEKFEADRFISRLLGMGDLKSLMEKAEETLSEEDVN--VEALMQGRFTLKDMYKQLEAMNKMGPLKQIMSMLPLGMGGMGGVKLSDEMFQATSDKMKNYKTIMDSMTE 381          
BLAST of CX289331 vs. ExPASy Swiss-Prot
Match: SRP54_UNCMA (Signal recognition 54 kDa protein OS=Uncultured methanogenic archaeon RC-I GN=srp54 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.452e-30
Identity = 75/198 (37.88%), Postives = 114/198 (57.58%), Query Frame = 2
Query:    2 DTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIP--GM-GKITPAQVREAEKSLK----IMEAMIEA 574
            DTAGR  ++  ++ E+KD+  +      LLV+DA  GQ+A+     FN  IGITG ++TKLDG ++GG ALS    +   I  +G GE  +D+E F PD    R+LGMGD+ + VE+A EV+Q++D     +K+M   F  ND   Q   + +MG + +++ M+P  G+ G IT    +  +  LK    IM++M  A
Sbjct:  184 DTAGRHALETDLIQEMKDIYGLTKFDHKLLVLDAAIGQQASEQARAFNDAIGITGVVITKLDGTAKGGGALSAVSDTNTSIAFIGVGETPDDMERFDPDGFISRLLGMGDLRALVERANEVLQKDDVN--VEKMMQGKFTLNDMYDQLEAINKMGPLKQIMSMLPLGGLGGNITDDMYKMTQDKLKGYKVIMDSMTAA 379          
BLAST of CX289331 vs. ExPASy Swiss-Prot
Match: SRP54_PYRAB (Signal recognition 54 kDa protein OS=Pyrococcus abyssi GN=srp54 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.452e-30
Identity = 70/196 (35.71%), Postives = 111/196 (56.63%), Query Frame = 2
Query:    2 DTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQ-EDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQV-----REAEKSLKIMEAMIE 571
            DTAGR + +K +++E++ +   + P EV+LV+D   GQ+A      F     I   I+TKLD  ++GG ALS    +G PIK +G GE+++DLEPF P R   R+LG+GD+   +EK +E+ ++ E  EE  ++ +   F   D   Q   + +MG + +++ MIPG+G   P +V         K   IM++M E
Sbjct:  189 DTAGRHKEEKDLIEEMRMISNEIKPHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDSSAKGGGALSAVAATGAPIKFIGTGEKIDDLEPFDPARFVSRLLGLGDIQGLLEKFKELEKEVEFTEEDLERFLKGKFTLKDMYAQLEAMRKMGPLKQILRMIPGLGYSLPDEVISVGEERLRKFKVIMDSMTE 384          
BLAST of CX289331 vs. ExPASy Swiss-Prot
Match: SRP54_METTP (Signal recognition 54 kDa protein OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=srp54 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.182e-30
Identity = 71/193 (36.79%), Postives = 109/193 (56.48%), Query Frame = 2
Query:    2 DTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIP--GMGKITPAQVREAEKSLKIMEAMIEA 574
            DTAGR  ++  ++ E+KD+  V+N    LLV+DA  GQ+A+     FN  +GITG I+TKLDG ++GG ALS    +   +  +G GE   DLE F  DR   R+LGMGD+   +EKAQEV  + D +     +M   F   D  KQ   + +MG + +++ M+P  G+G      +  ++K  ++ +  +EA
Sbjct:  184 DTAGRHALESDLIQEMKDIHAVVNADHKLLVMDAAIGQQASEQARAFNEAVGITGVIITKLDGTAKGGGALSAVAETKTSVAFIGVGETASDLEKFEADRFISRLLGMGDIKGLIEKAQEVQIESDVD--VDAMMKGKFTLKDMYKQLEAMNKMGPLKQIMQMLPFGGIG------IELSDKEYQVTKERLEA 368          
BLAST of CX289331 vs. ExPASy Swiss-Prot
Match: SRP54_PYRAR (Signal recognition 54 kDa protein OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=srp54 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 5.462e-30
Identity = 72/193 (37.31%), Postives = 119/193 (61.66%), Query Frame = 2
Query:    2 DTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPG--MGKITPAQVREAEKSLKIMEAMIEA 574
            DTAGR + ++A++ E+K +   +NP EV+LVVDA  G+ AAA    F   + I   I+TK+D  +RGG AL+    +G  +K +G GE +E+LEPF P +   R+LGMGD+ + +EK + V ++   EE+ ++I S   D   F KQ  ++ ++G +S+V  ++PG    KI+  Q+  ++K+LK   A++ +
Sbjct:  186 DTAGRHRNEEALLQEVKAIYDAVNPDEVVLVVDATVGKLAAAQAEAFMKYLPIHTVIITKMDSTARGGGALAAVAKTGARVKFIGVGEDVEELEPFNPRKFVARLLGMGDLDALLEKIKAVFEE---EEVLEEIESGRLDLLTFKKQIDSLMKLGPLSKVFQLLPGGLAAKISEEQIELSQKNLKKWRAILSS 375          
BLAST of CX289331 vs. ExPASy Swiss-Prot
Match: SRP54_METAC (Signal recognition 54 kDa protein OS=Methanosarcina acetivorans GN=srp54 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 5.462e-30
Identity = 73/197 (37.06%), Postives = 111/197 (56.35%), Query Frame = 2
Query:    2 DTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIP-GMG--KITPAQVREAEKSLK----IMEAMIE 571
            DTAGR  ++  +++E++ +  V  P    +V+DA  GQ+A+     FN  +GITG I+TKLDG ++GG ALS    +  PI  +G GE  ED E F  DR   R+LGMGD+ S +EKA+E + +ED     + +M   F   D  KQ   + +MG + +++ M+P GMG  K +    +     +K    IM++M E
Sbjct:  184 DTAGRHALEADLIEEMERIHAVAKPDHKFMVLDAGIGQQASQQAHAFNDSVGITGVIITKLDGTAKGGGALSAVSETKAPIAFIGVGETPEDFEKFEADRFISRLLGMGDLKSLMEKAEESLSEEDVN--VEALMQGRFTLKDMYKQLEAMNKMGPLKQIMSMLPMGMGGMKFSDEMFQATSDKMKNYKVIMDSMTE 378          
The following BLAST results are available for this feature:
BLAST of CX289331 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
SRP54_METM51.698e-3137.31Signal recognition 54 kDa protein OS=Methanococcus... [more]
SRP54_METBU2.896e-3136.04Signal recognition 54 kDa protein OS=Methanococcoi... [more]
SRP54_METS33.782e-3138.69Signal recognition 54 kDa protein OS=Methanobrevib... [more]
SRP54_METKA6.451e-3135.20Signal recognition 54 kDa protein OS=Methanopyrus ... [more]
SRP54_METBF1.877e-3036.50Signal recognition 54 kDa protein OS=Methanosarcin... [more]
SRP54_UNCMA2.452e-3037.88Signal recognition 54 kDa protein OS=Uncultured me... [more]
SRP54_PYRAB2.452e-3035.71Signal recognition 54 kDa protein OS=Pyrococcus ab... [more]
SRP54_METTP4.182e-3036.79Signal recognition 54 kDa protein OS=Methanosaeta ... [more]
SRP54_PYRAR5.462e-3037.31Signal recognition 54 kDa protein OS=Pyrobaculum a... [more]
SRP54_METAC5.462e-3037.06Signal recognition 54 kDa protein OS=Methanosarcin... [more]

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Properties
Property NameValue
Genbank descriptionC02011G08SK IF1 Citrus clementina cDNA clone C02011G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289331 ID=CX289331; Name=CX289331; organism=Citrus clementina; type=EST; length=576bp
AGATACTGCTGGAAGGCTTCAGATAGATAAAGCAATGATGGATGAGTTGA
AAGATGTGAAGCGTGTACTGAATCCTACTGAGGTTTTGCTAGTTGTGGAT
GCAATGACTGGCCAAGAAGCTGCAGCCCTGGTCACAACATTCAACATTGA
GATAGGGATTACAGGTGCCATTTTGACAAAGTTAGATGGAGATTCTAGGG
GTGGTGCGGCTTTGAGTGTTAAAGAGGTATCAGGAAAGCCAATCAAACTT
GTTGGACGAGGAGAACGAATGGAGGACCTTGAACCTTTCTACCCAGATCG
CATGGCTGGACGTATCTTAGGAATGGGAGATGTTCTCTCATTTGTAGAGA
AGGCACAAGAAGTTATGCAACAAGAAGATGCTGAAGAAATGCAAAAGAAG
ATAATGAGTGCGAATTTTGACTTCAATGATTTCTTAAAGCAAACCCGTAC
TGTTGCACGTATGGGTTCGATGAGTCGTGTTATAGGAATGATCCCTGGAA
TGGGGAAGATTACTCCTGCACAAGTTCGAGAAGCAGAGAAGAGTTTAAAA
ATAATGGAAGCAATGATCGAAGCAAT
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