CX289332

Overview
NameCX289332
Unique NameCX289332
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length530
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289332 vs. ExPASy Swiss-Prot
Match: Y556_SYNY3 (UPF0001 protein slr0556 OS=Synechocystis sp. (strain PCC 6803) GN=slr0556 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 8.444e-16
Identity = 48/116 (41.38%), Postives = 71/116 (61.21%), Query Frame = 2
Query:  131 PDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPD--DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSG 472
            P  +R+VAV+KTK ++ I   Y AG R F E+ +QE + K   L +  D+ WHFIG LQSNK + +   V N   + SVDN  IA +L+R+ E + + P + L+Q+    +E+KSG
Sbjct:   15 PPSVRLVAVTKTKAIADIEAAYGAGIRDFAESRIQEALPKIEALANYQDINWHFIGRLQSNKARKV---VENFTYIHSVDNLAIAVKLDRIAEELNKFP-QGLLQIKLLPDENKSG 126          
BLAST of CX289332 vs. ExPASy Swiss-Prot
Match: YLME_BACSU (UPF0001 protein ylmE OS=Bacillus subtilis GN=ylmE PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.440e-15
Identity = 46/146 (31.51%), Postives = 80/146 (54.79%), Query Frame = 2
Query:   77 LRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGEESKSGVEPSGCLELVKHVS 514
            LR + +R+++A  RS R  D + ++AV+K       ++  +AG  C GEN   E++ K   +  + EWHFIG+LQS K K +   V +++ + S+D   +A    + +E      ++  VQVNTS E SK G++    +  ++ +S
Sbjct:    7 LRHINERINEACNRSGRSSDEVTVIAVTKYVSPERAQEAVDAGITCLGENRDAELLRKQELMKGNPEWHFIGSLQSRKAKSV---VNSVSYIHSLDRLSLA----KEIEKRAEGTVRCFVQVNTSLEPSKHGMKKEEVIPFIQELS 145          
BLAST of CX289332 vs. ExPASy Swiss-Prot
Match: Y549_BUCAI (UPF0001 protein BU549 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=BU549 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.491e-12
Identity = 42/109 (38.53%), Postives = 62/109 (56.88%), Query Frame = 2
Query:  137 RIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLP--DDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNTSGE 457
            +I I+AVSK + ++ I +   +G   FGENY+QE + K   L    ++ WHFIG +QSNK K +     N +  ++VD EKIA  LN+        P+ VL+Q+N   E
Sbjct:    3 KITIIAVSKNRNINNIEEAIRSGINNFGENYLQESLIKIENLKKYKNITWHFIGKIQSNKTKKI---AQNFSWCQTVDREKIAVLLNKF-RPKNLPPINVLIQINNLKE 107          
The following BLAST results are available for this feature:
BLAST of CX289332 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
Y556_SYNY38.444e-1641.38UPF0001 protein slr0556 OS=Synechocystis sp. (stra... [more]
YLME_BACSU1.440e-1531.51UPF0001 protein ylmE OS=Bacillus subtilis GN=ylmE ... [more]
Y549_BUCAI1.491e-1238.53UPF0001 protein BU549 OS=Buchnera aphidicola subsp... [more]

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Properties
Property NameValue
Genbank descriptionC02011G09SK IF1 Citrus clementina cDNA clone C02011G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289332 ID=CX289332; Name=CX289332; organism=Citrus clementina; type=EST; length=530bp
GAATCATATCAACGAACAAGTAGAAGCAGAAACCATGGCTGCGTCTGCCG
CCACAGATGGCGTTGCAGCGACGGCGCTTCGGTCCGTGATCCAACGGGTC
CACCAAGCCGCCGAGAGATCCAGTCGCCCGCCGGACCGGATTCGAATCGT
CGCTGTCAGCAAAACCAAACCGGTCTCAGTAATCCGTCAGGTTTATGAGG
CCGGTCACCGATGTTTCGGTGAAAACTACGTTCAAGAAATAGTGGAAAAG
GCGGCTCAGCTTCCAGATGATCTAGAATGGCATTTCATTGGGAACCTGCA
GAGCAATAAAGTGAAACCTTTATTGGCTGGTGTGCCTAACCTGGCAATGG
TAGAAAGTGTGGACAACGAGAAGATTGCAGGTCGTCTTAATCGTATGGTT
GAAACCATGGGAAGGAAGCCTTTAAAAGTCTTGGTTCAAGTGAATACCAG
TGGAGAAGAATCGAAATCTGGAGTTGAGCCTTCAGGGTGTCTGGAACTTG
TGAAACATGTTAGTCAAAACTGTCCGAATC
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