CX289369

Overview
NameCX289369
Unique NameCX289369
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length384
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289369 vs. ExPASy Swiss-Prot
Match: NLTPA_BRAOT (Non-specific lipid-transfer protein A OS=Brassica oleracea var. italica GN=WAX9A PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.386e-27
Identity = 54/102 (52.94%), Postives = 74/102 (72.55%), Query Frame = 1
Query:   82 LKLVSALVLCMLVTGPLSA-QAITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSI-PNLNPNNAVGLPRACGVSIPY 381
            +KL   ++ CM+V GP++A +A+TCG V  ++APCI Y+  GG +P  CC GV  LN+ ARTTPDRQ AC CL+ AA ++ PNLN   A G+P+ACGVS+P+
Sbjct:    5 MKLACLVLACMIVAGPITANRALTCGTVNSNVAPCIGYITQGGTLPGACCTGVSKLNSMARTTPDRQQACRCLETAARALGPNLNAGRAAGIPKACGVSVPF 106          
BLAST of CX289369 vs. ExPASy Swiss-Prot
Match: NLTP2_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.386e-27
Identity = 60/104 (57.69%), Postives = 72/104 (69.23%), Query Frame = 1
Query:   79 ALKLVSALVLCMLVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVP--CCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYK 384
            +LKL   +VLCM+V  PL+  A+T GQVT SLAPCI YLR  G   VP  CC G++SLN+AA+TTP RQ AC C+K AA  I  +N   A GLP  CGV+IPYK
Sbjct:    6 SLKLACVVVLCMVVGAPLAQGAVTSGQVTNSLAPCINYLRGSGAGAVPPGCCTGIKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYK 109          
BLAST of CX289369 vs. ExPASy Swiss-Prot
Match: NLTP1_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.386e-27
Identity = 60/104 (57.69%), Postives = 72/104 (69.23%), Query Frame = 1
Query:   79 ALKLVSALVLCMLVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVP--CCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYK 384
            +LKL   +VLCM+V  PL+  A+T GQVT SLAPCI YLR  G   VP  CC G++SLN+AA+TTP RQ AC C+K AA  I  +N   A GLP  CGV+IPYK
Sbjct:    2 SLKLACVVVLCMVVGAPLAQGAVTSGQVTNSLAPCINYLRGSGAGAVPPGCCTGIKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYK 105          
BLAST of CX289369 vs. ExPASy Swiss-Prot
Match: NLTP1_TOBAC (Non-specific lipid-transfer protein 1 OS=Nicotiana tabacum GN=LTP1 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.772e-27
Identity = 58/100 (58.00%), Postives = 72/100 (72.00%), Query Frame = 1
Query:   85 KLVSALVLCMLVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYK 384
            K+   +VLCM+V  P  A+AITCGQVT +LAPC+ YLR+ GP+   CC GV++L  +ARTT DRQ AC CLK AAG+I  +N   A GLP  CGV+IPYK
Sbjct:    6 KIACFVVLCMVVAAPC-AEAITCGQVTSNLAPCLAYLRNTGPLG-RCCGGVKALVNSARTTEDRQIACTCLKSAAGAISGINLGKAAGLPSTCGVNIPYK 103          
BLAST of CX289369 vs. ExPASy Swiss-Prot
Match: NLTPD_BRAOT (Non-specific lipid-transfer protein D OS=Brassica oleracea var. italica GN=WAX9D PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.667e-26
Identity = 55/103 (53.40%), Postives = 72/103 (69.90%), Query Frame = 1
Query:   82 LKLVSALVLCMLVTGPLSAQA-ITCGQVTGSLAPCIVYLRSGGP-IPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYK 384
            +KL   +  CM+V GP+++ A ++CG V+G +APCI YL    P +P  CC+GV SLN  ARTTPDRQ AC CL  AA ++P +N   A GLP+ACGV+IPYK
Sbjct:    5 MKLACLIFACMIVAGPITSNAALSCGTVSGYVAPCIGYLAQNAPAVPTACCSGVTSLNNMARTTPDRQQACRCLVGAANALPTINVARAAGLPKACGVNIPYK 107          
BLAST of CX289369 vs. ExPASy Swiss-Prot
Match: NLTP_DAUCA (Non-specific lipid-transfer protein OS=Daucus carota GN=EP2 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.272e-26
Identity = 59/101 (58.42%), Postives = 72/101 (71.29%), Query Frame = 1
Query:   91 VSALVLCM-LVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVP--CCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPYK 384
            V+ +V+ M L T P +   +TCGQVTG+LAPC+ YLRS   +PVP  CCN VR LN AARTT D++TAC CLKQ A ++  LN N A GLP  CGV+IPYK
Sbjct:    9 VAMMVMYMVLATTPNAEAVLTCGQVTGALAPCLGYLRSQVNVPVPLTCCNVVRGLNNAARTTLDKRTACGCLKQTANAVTGLNLNAAAGLPARCGVNIPYK 109          
BLAST of CX289369 vs. ExPASy Swiss-Prot
Match: NLTP1_ARATH (Non-specific lipid-transfer protein 1 OS=Arabidopsis thaliana GN=LTP1 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.272e-26
Identity = 53/103 (51.46%), Postives = 75/103 (72.82%), Query Frame = 1
Query:   82 LKLVSALVLCMLVTGPLSAQA-ITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSI-PNLNPNNAVGLPRACGVSIPYK 384
            +KL   L+ CM+V GP+++ A ++CG V  +LA CI Y+  GG IP  CC+GV++LN+ A+TTPDRQ ACNC++ AA ++   LN   A G+P+ACGV+IPYK
Sbjct:    5 MKLACLLLACMIVAGPITSNAALSCGSVNSNLAACIGYVLQGGVIPPACCSGVKNLNSIAKTTPDRQQACNCIQGAARALGSGLNAGRAAGIPKACGVNIPYK 107          
BLAST of CX289369 vs. ExPASy Swiss-Prot
Match: NLTP3_ARATH (Non-specific lipid-transfer protein 3 OS=Arabidopsis thaliana GN=LTP3 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.843e-25
Identity = 55/101 (54.46%), Postives = 69/101 (68.32%), Query Frame = 1
Query:   79 ALKLVSALVLCMLVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPY 381
            AL+  + LVL + +   + A AI+CG V GSLAPC  YL  GG +P  CC GV++LN+ A+TTPDRQ AC C++  A SI  LNP+ A GLP  CGVSIPY
Sbjct:    4 ALRFFTCLVLTVCIVASVDA-AISCGTVAGSLAPCATYLSKGGLVPPSCCAGVKTLNSMAKTTPDRQQACRCIQSTAKSISGLNPSLASGLPGKCGVSIPY 103          
BLAST of CX289369 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSJ (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. japonica GN=LTP PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.843e-25
Identity = 57/104 (54.81%), Postives = 68/104 (65.38%), Query Frame = 1
Query:   73 MAALKLVS-ALVLCMLVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPY 381
            MA  +LV  ALV  +L+  P +A AITCGQV  ++ PC+ Y R G      CC+GVRSL AAA TT DR+TACNCLK AA  I  LN  NA  +P  CGVS+PY
Sbjct:    1 MARAQLVLVALVAALLLAAPHAAVAITCGQVNSAVGPCLTYARGGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPY 104          
BLAST of CX289369 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSI (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. indica GN=LTP PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.843e-25
Identity = 57/104 (54.81%), Postives = 68/104 (65.38%), Query Frame = 1
Query:   73 MAALKLVS-ALVLCMLVTGPLSAQAITCGQVTGSLAPCIVYLRSGGPIPVPCCNGVRSLNAAARTTPDRQTACNCLKQAAGSIPNLNPNNAVGLPRACGVSIPY 381
            MA  +LV  ALV  +L+  P +A AITCGQV  ++ PC+ Y R G      CC+GVRSL AAA TT DR+TACNCLK AA  I  LN  NA  +P  CGVS+PY
Sbjct:    1 MARAQLVLVALVAALLLAAPHAAVAITCGQVNSAVGPCLTYARGGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPY 104          
The following BLAST results are available for this feature:
BLAST of CX289369 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
NLTPA_BRAOT4.386e-2752.94Non-specific lipid-transfer protein A OS=Brassica ... [more]
NLTP2_GOSHI4.386e-2757.69Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP1_GOSHI4.386e-2757.69Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP1_TOBAC9.772e-2758.00Non-specific lipid-transfer protein 1 OS=Nicotiana... [more]
NLTPD_BRAOT1.667e-2653.40Non-specific lipid-transfer protein D OS=Brassica ... [more]
NLTP_DAUCA8.272e-2658.42Non-specific lipid-transfer protein OS=Daucus caro... [more]
NLTP1_ARATH8.272e-2651.46Non-specific lipid-transfer protein 1 OS=Arabidops... [more]
NLTP3_ARATH1.843e-2554.46Non-specific lipid-transfer protein 3 OS=Arabidops... [more]
NLTP1_ORYSJ1.843e-2554.81Non-specific lipid-transfer protein 1 OS=Oryza sat... [more]
NLTP1_ORYSI1.843e-2554.81Non-specific lipid-transfer protein 1 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionC02012C06SK IF1 Citrus clementina cDNA clone C02012C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289369 ID=CX289369; Name=CX289369; organism=Citrus clementina; type=EST; length=384bp
AACACAGCTAGCCATAAACAAAGGCAAAAAAAAAAAAGAAAAAGAAAAAG
AAAATCTCAGGAGAAATCTCAAATGGCTGCCCTCAAGCTTGTTTCAGCTT
TGGTTCTGTGCATGTTGGTGACTGGTCCCCTGAGTGCTCAGGCCATAACA
TGTGGGCAGGTGACTGGCTCATTGGCACCATGCATCGTTTACTTGAGATC
GGGCGGCCCTATACCTGTGCCATGCTGCAACGGCGTCAGGTCTCTCAACG
CTGCCGCCAGAACCACACCTGACCGCCAAACTGCATGCAACTGCTTGAAG
CAAGCCGCCGGATCAATCCCTAACCTCAACCCTAATAATGCTGTTGGTCT
TCCACGAGCTTGTGGAGTCAGCATTCCTTACAAG
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