CX289373

Overview
NameCX289373
Unique NameCX289373
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length372
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289373 vs. ExPASy Swiss-Prot
Match: DBP3_YEAST (ATP-dependent RNA helicase DBP3 OS=Saccharomyces cerevisiae GN=DBP3 PE=1 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 6.019e-37
Identity = 75/123 (60.98%), Postives = 93/123 (75.61%), Query Frame = 3
Query:    3 LENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALLKFGTHVK 371
            +E  L+ +G+ V AIHG  +Q +RT++L+ FK G   L++ATDVAARGLDIP+V+ VIN +FPLT EDYVHRIGRTGRAG+ G +HT FT   K LAG LVNVL  A Q VP+ L+KFGTH K
Sbjct:  375 VERNLKYNGYNVAAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQTGTAHTLFTEQEKHLAGGLVNVLNGANQPVPEDLIKFGTHTK 497          
BLAST of CX289373 vs. ExPASy Swiss-Prot
Match: DBP3_YEAS7 (ATP-dependent RNA helicase DBP3 OS=Saccharomyces cerevisiae (strain YJM789) GN=DBP3 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 7.861e-37
Identity = 74/123 (60.16%), Postives = 93/123 (75.61%), Query Frame = 3
Query:    3 LENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALLKFGTHVK 371
            +E  L+ +G+ + AIHG  +Q +RT++L+ FK G   L++ATDVAARGLDIP+V+ VIN +FPLT EDYVHRIGRTGRAG+ G +HT FT   K LAG LVNVL  A Q VP+ L+KFGTH K
Sbjct:  375 VERNLKYNGYNIAAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGQTGTAHTLFTEQEKHLAGGLVNVLNGANQPVPEDLIKFGTHTK 497          
BLAST of CX289373 vs. ExPASy Swiss-Prot
Match: DBP3_VANPO (ATP-dependent RNA helicase DBP3 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=DBP3 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.027e-36
Identity = 76/123 (61.79%), Postives = 90/123 (73.17%), Query Frame = 3
Query:    3 LENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALLKFGTHVK 371
            +E  L  +G+KV AIHG  +Q +RT +L  FK G   +++ATDVAARGLDIP+V+ VIN +FPLT EDYVHRIGRTGRAGK G +HT FT   K LAG LVNVL  A Q VP+ L KFGTH K
Sbjct:  382 VERNLNYNGYKVSAIHGDLSQQQRTNALDEFKTGRSSILLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRAGKTGTAHTLFTEQEKHLAGSLVNVLNGAGQPVPEELKKFGTHTK 504          
BLAST of CX289373 vs. ExPASy Swiss-Prot
Match: DBP3_ASPCL (ATP-dependent RNA helicase dbp3 OS=Aspergillus clavatus GN=dbp3 PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.751e-36
Identity = 76/123 (61.79%), Postives = 91/123 (73.98%), Query Frame = 3
Query:    3 LENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALLKFGTHVK 371
            +E +LR   +KV  IHG   QHER KSL  FK G   ++VATDVAARGLDIP V++VIN +FPLT EDYVHRIGRTGRAG +G + T FT  +KA +G L+NVL+ A+Q VP  LLKFGT VK
Sbjct:  354 VERLLRNKNFKVAGIHGDLNQHERFKSLDAFKSGAATVLVATDVAARGLDIPSVKLVINVTFPLTVEDYVHRIGRTGRAGAEGRAITLFTETDKAQSGALINVLKAAKQEVPQELLKFGTTVK 476          
BLAST of CX289373 vs. ExPASy Swiss-Prot
Match: DBP3_ASPOR (ATP-dependent RNA helicase dbp3 OS=Aspergillus oryzae GN=dbp3 PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 5.095e-36
Identity = 75/123 (60.98%), Postives = 92/123 (74.80%), Query Frame = 3
Query:    3 LENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALLKFGTHVK 371
            +E +LR  G+KV  IHG  +Q ER +SL  FK G   ++VATDVAARGLDIP V+ VIN +FPLT EDYVHRIGRTGRAG +G + T FT  +KA +G L+NVLR A+Q +P+ LLKFGT VK
Sbjct:  349 IERLLRTKGFKVAGIHGDLSQQERFRSLDAFKTGAATVLVATDVAARGLDIPSVKQVINVTFPLTVEDYVHRIGRTGRAGAEGHAVTLFTETDKAQSGALINVLRAAKQDIPEDLLKFGTTVK 471          
BLAST of CX289373 vs. ExPASy Swiss-Prot
Match: DBP3_SCHPO (ATP-dependent RNA helicase dbp3 OS=Schizosaccharomyces pombe GN=dbp3 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 6.655e-36
Identity = 76/123 (61.79%), Postives = 94/123 (76.42%), Query Frame = 3
Query:    3 LENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALLKFGTHVK 371
            +E  L R  + VV IHG  +Q  R ++L+ FK G CP++VATDVAARGLDIP V++VIN +FPLT EDYVHRIGRTGRA  KG + TFFT  +K+ AGELVNVLR+A+Q +P+ L KFGT VK
Sbjct:  433 VEGTLARK-YNVVGIHGDMSQGARLQALNDFKSGKCPVLVATDVAARGLDIPKVQLVINVTFPLTIEDYVHRIGRTGRANTKGTAITFFTPQDKSHAGELVNVLRQAKQDIPEGLFKFGTAVK 554          
BLAST of CX289373 vs. ExPASy Swiss-Prot
Match: DBP3_EMENI (ATP-dependent RNA helicase dbp3 OS=Emericella nidulans GN=dbp3 PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 8.691e-36
Identity = 74/123 (60.16%), Postives = 92/123 (74.80%), Query Frame = 3
Query:    3 LENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALLKFGTHVK 371
            +E +LR  G+KV  IHG  +Q ER +SL  FK G   ++VATDVAARGLDIP V++V+N +FPLT EDYVHRIGRTGRAG  G + T FT  +KA +G L+NVL+ A Q VP+ALLKFG+ VK
Sbjct:  339 VERLLRTKGFKVAGIHGDLSQQERFRSLEAFKSGAATVLVATDVAARGLDIPHVKLVVNVTFPLTVEDYVHRIGRTGRAGADGHAITLFTETDKAQSGALINVLKAANQEVPEALLKFGSTVK 461          
BLAST of CX289373 vs. ExPASy Swiss-Prot
Match: DBP3_ASPNC (ATP-dependent RNA helicase dbp3 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=dbp3 PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.639e-34
Identity = 74/123 (60.16%), Postives = 90/123 (73.17%), Query Frame = 3
Query:    3 LENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALLKFGTHVK 371
            +E +L   G+KV  IHG   Q ER KSL  FK+G   ++VATDVAARGLDIP V++VIN +FPLT EDYVHRIGRTGRAG +G + T FT  +KA +G L+NVL+ A Q VP+ LLKFG  VK
Sbjct:  346 VERLLWNKGFKVAGIHGDLGQQERFKSLESFKKGVSTVLVATDVAARGLDIPSVKLVINVTFPLTVEDYVHRIGRTGRAGAEGHAITLFTEVDKAQSGALINVLKAANQDVPEDLLKFGATVK 468          
BLAST of CX289373 vs. ExPASy Swiss-Prot
Match: DBP3_ASPTN (ATP-dependent RNA helicase dbp3 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=dbp3 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 4.769e-34
Identity = 73/123 (59.35%), Postives = 90/123 (73.17%), Query Frame = 3
Query:    3 LENMLRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDALLKFGTHVK 371
            +E  L+  G+KV  IHG  +Q ER +SL  FK G   ++VATDVAARGLDIP V++VIN +FPLT EDYVHRIGRTGRAG +G + T FT  +KA +G L+NVL+ A Q VP+ LLKFG  VK
Sbjct:  344 IERFLQSRGFKVAGIHGDLSQQERFRSLDAFKTGAATVLVATDVAARGLDIPAVKLVINVTFPLTVEDYVHRIGRTGRAGAEGHAITLFTETDKAQSGALINVLKAAGQEVPEELLKFGGTVK 466          
BLAST of CX289373 vs. ExPASy Swiss-Prot
Match: RH30_ARATH (DEAD-box ATP-dependent RNA helicase 30 OS=Arabidopsis thaliana GN=RH30 PE=2 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 2.367e-33
Identity = 67/111 (60.36%), Postives = 81/111 (72.97%), Query Frame = 3
Query:   15 LRRSGWKVVAIHGKKAQHERTKSLSLFKEGTCPLMVATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVSHTFFTNHNKALAGELVNVLREARQVVPDAL 347
            LR  GW  +AIHG K Q ER + L+ FK G  P+M ATDVAARGLD+ D++ V+NY FP T EDY+HRIGRTGRAG KG++ TFFT+ N   A ELV +L+EA QVVP  L
Sbjct:  430 LRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIMTATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDNAKFARELVKILQEAGQVVPPTL 540          
The following BLAST results are available for this feature:
BLAST of CX289373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DBP3_YEAST6.019e-3760.98ATP-dependent RNA helicase DBP3 OS=Saccharomyces c... [more]
DBP3_YEAS77.861e-3760.16ATP-dependent RNA helicase DBP3 OS=Saccharomyces c... [more]
DBP3_VANPO1.027e-3661.79ATP-dependent RNA helicase DBP3 OS=Vanderwaltozyma... [more]
DBP3_ASPCL1.751e-3661.79ATP-dependent RNA helicase dbp3 OS=Aspergillus cla... [more]
DBP3_ASPOR5.095e-3660.98ATP-dependent RNA helicase dbp3 OS=Aspergillus ory... [more]
DBP3_SCHPO6.655e-3661.79ATP-dependent RNA helicase dbp3 OS=Schizosaccharom... [more]
DBP3_EMENI8.691e-3660.16ATP-dependent RNA helicase dbp3 OS=Emericella nidu... [more]
DBP3_ASPNC1.639e-3460.16ATP-dependent RNA helicase dbp3 OS=Aspergillus nig... [more]
DBP3_ASPTN4.769e-3459.35ATP-dependent RNA helicase dbp3 OS=Aspergillus ter... [more]
RH30_ARATH2.367e-3360.36DEAD-box ATP-dependent RNA helicase 30 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionC02012C12SK IF1 Citrus clementina cDNA clone C02012C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289373 ID=CX289373; Name=CX289373; organism=Citrus clementina; type=EST; length=372bp
GTCTTGAAAATATGCTGCGGCGAAGTGGTTGGAAGGTCGTTGCAATACAT
GGTAAGAAAGCACAGCATGAACGTACAAAGTCACTGTCATTATTCAAGGA
GGGAACTTGTCCATTGATGGTTGCTACTGACGTTGCTGCTCGAGGATTGG
ATATTCCAGATGTTGAAGTAGTTATTAACTATTCTTTCCCTTTAACCACG
GAGGATTATGTTCACAGAATTGGTAGGACTGGCCGGGCCGGTAAGAAGGG
TGTCTCTCACACATTCTTCACAAATCATAATAAGGCACTTGCTGGGGAGC
TGGTGAATGTTCTCAGAGAAGCTAGACAAGTTGTGCCAGATGCTCTTCTG
AAATTTGGCACTCATGTAAAGA
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