CX289387

Overview
NameCX289387
Unique NameCX289387
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length183
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289387 vs. ExPASy Swiss-Prot
Match: RIR1_VACCA (Ribonucleoside-diphosphate reductase large subunit OS=Vaccinia virus (strain Ankara) GN=MVA065L PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.461e-14
Identity = 35/59 (59.32%), Postives = 42/59 (71.19%), Query Frame = 3
Query:    6 ALKTSSEIAAKEGPYETYHNSPVSKGIIQPDMWNVIPSDRWDWGVLKDMISKNGLRNPL 182
            AL+ S E+A KEGPY+TY  S  S GI+Q D+WNV+PSD W+W  LKD I   GLRN L
Sbjct:  538 ALEASCELAEKEGPYDTYVGSYASNGILQYDLWNVVPSDLWNWEPLKDKIRTYGLRNSL 596          
BLAST of CX289387 vs. ExPASy Swiss-Prot
Match: RIR1_DICDI (Ribonucleoside-diphosphate reductase large subunit OS=Dictyostelium discoideum GN=rnrA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.589e-13
Identity = 34/60 (56.67%), Postives = 44/60 (73.33%), Query Frame = 3
Query:    6 ALKTSSEIAAKEGPYETYHNSPVSKGIIQPDMWNVIPSDRWDWGVLKD-MISKNGLRNPL 182
            AL  S E+A ++G YE++  SP SKGI+Q DMWNV PS RW+W  LKD +++K GLRN L
Sbjct:  566 ALTASHELAIRDGTYESFKGSPASKGILQFDMWNVTPSSRWNWAELKDNIVNKGGLRNSL 625          
BLAST of CX289387 vs. ExPASy Swiss-Prot
Match: RIR1_NEUCR (Ribonucleoside-diphosphate reductase large chain OS=Neurospora crassa GN=rnr-1 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 2.075e-13
Identity = 33/59 (55.93%), Postives = 42/59 (71.19%), Query Frame = 3
Query:    6 ALKTSSEIAAKEGPYETYHNSPVSKGIIQPDMWNVIPSDRWDWGVLKDMISKNGLRNPL 182
            AL  S ++A ++GPY TY  SPVS+GI+Q DMWNV P++ WDW  LK  I K G+RN L
Sbjct:  540 ALTASCQLAKEQGPYATYEGSPVSQGILQYDMWNVTPTNLWDWTALKADIKKYGVRNSL 598          
BLAST of CX289387 vs. ExPASy Swiss-Prot
Match: RIR1_CRYPV (Ribonucleoside-diphosphate reductase large chain OS=Cryptosporidium parvum GN=RNR1 PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 4.623e-13
Identity = 37/60 (61.67%), Postives = 42/60 (70.00%), Query Frame = 3
Query:    6 ALKTSSEIAAKEGPYETYHNSPVSKGIIQPDMWNVIP-SDRWDWGVLKDMISKNGLRNPL 182
            AL  S E+A K GPYETY  SP SKGI+Q DMW V P S   DW +LKD ISK+G+RN L
Sbjct:  538 ALDASCELAEKYGPYETYSGSPASKGILQFDMWGVTPDSGLCDWDLLKDRISKHGIRNSL 597          
BLAST of CX289387 vs. ExPASy Swiss-Prot
Match: RIR1_CAEEL (Ribonucleoside-diphosphate reductase large subunit OS=Caenorhabditis elegans GN=rnr-1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.345e-12
Identity = 32/59 (54.24%), Postives = 41/59 (69.49%), Query Frame = 3
Query:    6 ALKTSSEIAAKEGPYETYHNSPVSKGIIQPDMWNVIPSDRWDWGVLKDMISKNGLRNPL 182
            AL+ S E+A   GPY TY  SPVSKG +Q DMW V P+D+ DW  L+  I+K+G+RN L
Sbjct:  545 ALEASCELAELNGPYSTYEGSPVSKGQLQFDMWGVTPTDQCDWATLRKKIAKHGIRNSL 603          
BLAST of CX289387 vs. ExPASy Swiss-Prot
Match: RIR3_YEAST (Ribonucleoside-diphosphate reductase large chain 2 OS=Saccharomyces cerevisiae GN=RNR3 PE=1 SV=4)

HSP 1 Score: 69.707 bits (169), Expect = 5.111e-12
Identity = 32/58 (55.17%), Postives = 38/58 (65.52%), Query Frame = 3
Query:    9 LKTSSEIAAKEGPYETYHNSPVSKGIIQPDMWNVIPSDRWDWGVLKDMISKNGLRNPL 182
            L+ S E+A KEG Y T+  SP SKGI+Q DMWN  P   WDW  L+  I K+GLRN L
Sbjct:  544 LEASCELAQKEGKYSTFEGSPASKGILQFDMWNAKPFGMWDWETLRKDIVKHGLRNSL 601          
BLAST of CX289387 vs. ExPASy Swiss-Prot
Match: RIR1_YEAST (Ribonucleoside-diphosphate reductase large chain 1 OS=Saccharomyces cerevisiae GN=RNR1 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.139e-11
Identity = 29/59 (49.15%), Postives = 41/59 (69.49%), Query Frame = 3
Query:    6 ALKTSSEIAAKEGPYETYHNSPVSKGIIQPDMWNVIPSDRWDWGVLKDMISKNGLRNPL 182
            +++ S E+A K+GPYET+  SP S+GI+Q DMW+  P   WDW  L+  I K+G+RN L
Sbjct:  543 SMEASCELAQKDGPYETFQGSPASQGILQFDMWDQKPYGMWDWDTLRKDIMKHGVRNSL 601          
BLAST of CX289387 vs. ExPASy Swiss-Prot
Match: RIR1_PLAF4 (Ribonucleoside-diphosphate reductase large subunit OS=Plasmodium falciparum (isolate Dd2) GN=RNR1 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.327e-11
Identity = 32/60 (53.33%), Postives = 41/60 (68.33%), Query Frame = 3
Query:    6 ALKTSSEIAAKEGPYETYHNSPVSKGIIQPDMWNV-IPSDRWDWGVLKDMISKNGLRNPL 182
            AL+ S E+A+  GPYE+Y  SP S+GI+Q DMWN  + +  WDW  LK  I K+GLRN L
Sbjct:  538 ALEMSVELASIHGPYESYQGSPASQGILQFDMWNAKVDNKYWDWDELKAKIRKHGLRNSL 597          
The following BLAST results are available for this feature:
BLAST of CX289387 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
RIR1_VACCA5.461e-1459.32Ribonucleoside-diphosphate reductase large subunit... [more]
RIR1_DICDI1.589e-1356.67Ribonucleoside-diphosphate reductase large subunit... [more]
RIR1_NEUCR2.075e-1355.93Ribonucleoside-diphosphate reductase large chain O... [more]
RIR1_CRYPV4.623e-1361.67Ribonucleoside-diphosphate reductase large chain O... [more]
RIR1_CAEEL1.345e-1254.24Ribonucleoside-diphosphate reductase large subunit... [more]
RIR3_YEAST5.111e-1255.17Ribonucleoside-diphosphate reductase large chain 2... [more]
RIR1_YEAST1.139e-1149.15Ribonucleoside-diphosphate reductase large chain 1... [more]
RIR1_PLAF44.327e-1153.33Ribonucleoside-diphosphate reductase large subunit... [more]

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Properties
Property NameValue
Genbank descriptionC02012E09SK IF1 Citrus clementina cDNA clone C02012E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289387 ID=CX289387; Name=CX289387; organism=Citrus clementina; type=EST; length=183bp
ACCATGCTCTGAAAACTTCTTCGGAGATAGCTGCAAAAGAAGGTCCCTAT
GAAACATATCATAATAGCCCTGTGAGCAAGGGAATTATCCAACCTGACAT
GTGGAATGTAATTCCATCAGATCGATGGGACTGGGGAGTACTTAAAGATA
TGATATCAAAGAATGGACTGAGAAATCCACTTC
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