CX289394

Overview
NameCX289394
Unique NameCX289394
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length344
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289394 vs. ExPASy Swiss-Prot
Match: RL24_KLULA (60S ribosomal protein L24 OS=Kluyveromyces lactis GN=RPL24 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.007e-24
Identity = 52/106 (49.06%), Postives = 73/106 (68.87%), Query Frame = 2
Query:   26 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAR 343
            +K E+  FSGAKIYPG+G  F+R DS++F F +SK    FH R  P ++ WT +YR+ HKK I  E  +K+ R + K   R++VGA+LE+I++RR+ KPEVR A R
Sbjct:    1 MKVEIDSFSGAKIYPGRGTLFVRGDSKIFRFQSSKSASLFHQRKNPRRIAWTVLYRRHHKKGITEEVARKRTRKSVKA-QRAVVGASLELIKERRSLKPEVRKAQR 105          
BLAST of CX289394 vs. ExPASy Swiss-Prot
Match: RL24A_YEAST (60S ribosomal protein L24-A OS=Saccharomyces cerevisiae GN=RPL24A PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.301e-23
Identity = 53/106 (50.00%), Postives = 70/106 (66.04%), Query Frame = 2
Query:   26 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAR 343
            +K E+  FSGAKIYPG+G  F+R DS++F F NSK    F  R  P ++ WT ++RK HKK I  E  KK+ R T K   R I GA+L++I++RR+ KPEVR A R
Sbjct:    1 MKVEIDSFSGAKIYPGRGTLFVRGDSKIFRFQNSKSASLFKQRKNPRRIAWTVLFRKHHKKGITEEVAKKRSRKTVKA-QRPITGASLDLIKERRSLKPEVRKANR 105          
BLAST of CX289394 vs. ExPASy Swiss-Prot
Match: RL24B_YEAST (60S ribosomal protein L24-B OS=Saccharomyces cerevisiae GN=RPL24B PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.699e-23
Identity = 53/106 (50.00%), Postives = 70/106 (66.04%), Query Frame = 2
Query:   26 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAR 343
            +K E+  FSGAKIYPG+G  F+R DS++F F NSK    F  R  P ++ WT ++RK HKK I  E  KK+ R T K   R I GA+L++I++RR+ KPEVR A R
Sbjct:    1 MKVEVDSFSGAKIYPGRGTLFVRGDSKIFRFQNSKSASLFKQRKNPRRIAWTVLFRKHHKKGITEEVAKKRSRKTVKA-QRPITGASLDLIKERRSLKPEVRKANR 105          
BLAST of CX289394 vs. ExPASy Swiss-Prot
Match: RL24_NEUCR (60S ribosomal protein L24 OS=Neurospora crassa GN=rpl-24 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 4.943e-23
Identity = 51/99 (51.52%), Postives = 69/99 (69.70%), Query Frame = 2
Query:   47 FSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKKRRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAR 343
            FSG +IYPGKG  ++R DS++F F N K +  F  R  P ++ WT +YR+QHKK I+ E  KK+ R T K   R+IVGA+LEVI++RR+ +PE R AAR
Sbjct:    8 FSGQRIYPGKGKLYVRGDSKIFRFQNGKSESLFLQRKNPRRIAWTVLYRRQHKKGISEEVAKKRSRRTVKA-QRAIVGASLEVIKERRSMRPEARSAAR 105          
BLAST of CX289394 vs. ExPASy Swiss-Prot
Match: RL24_RAT (60S ribosomal protein L24 OS=Rattus norvegicus GN=Rpl24 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.878e-22
Identity = 52/107 (48.60%), Postives = 72/107 (67.29%), Query Frame = 2
Query:   26 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKK-RRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAR 343
            +K ELC FSG KIYPG G R+ R+D +VF F N+KC+  F ++  P ++ WT +YR++HKK  + E  KK+ RRA K  + R+I GA+L  I  +R +KPEVR A R
Sbjct:    1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKKRTRRAVK--FQRAITGASLADIMAKRNQKPEVRKAQR 105          
BLAST of CX289394 vs. ExPASy Swiss-Prot
Match: RL24_MOUSE (60S ribosomal protein L24 OS=Mus musculus GN=Rpl24 PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 1.878e-22
Identity = 52/107 (48.60%), Postives = 72/107 (67.29%), Query Frame = 2
Query:   26 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKK-RRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAR 343
            +K ELC FSG KIYPG G R+ R+D +VF F N+KC+  F ++  P ++ WT +YR++HKK  + E  KK+ RRA K  + R+I GA+L  I  +R +KPEVR A R
Sbjct:    1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKKRTRRAVK--FQRAITGASLADIMAKRNQKPEVRKAQR 105          
BLAST of CX289394 vs. ExPASy Swiss-Prot
Match: RL24_MACFA (60S ribosomal protein L24 OS=Macaca fascicularis GN=RPL24 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.878e-22
Identity = 52/107 (48.60%), Postives = 72/107 (67.29%), Query Frame = 2
Query:   26 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKK-RRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAR 343
            +K ELC FSG KIYPG G R+ R+D +VF F N+KC+  F ++  P ++ WT +YR++HKK  + E  KK+ RRA K  + R+I GA+L  I  +R +KPEVR A R
Sbjct:    1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKKRTRRAVK--FQRAITGASLADIMAKRNQKPEVRKAQR 105          
BLAST of CX289394 vs. ExPASy Swiss-Prot
Match: RL24_HUMAN (60S ribosomal protein L24 OS=Homo sapiens GN=RPL24 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.878e-22
Identity = 52/107 (48.60%), Postives = 72/107 (67.29%), Query Frame = 2
Query:   26 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKK-RRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAR 343
            +K ELC FSG KIYPG G R+ R+D +VF F N+KC+  F ++  P ++ WT +YR++HKK  + E  KK+ RRA K  + R+I GA+L  I  +R +KPEVR A R
Sbjct:    1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKKRTRRAVK--FQRAITGASLADIMAKRNQKPEVRKAQR 105          
BLAST of CX289394 vs. ExPASy Swiss-Prot
Match: RL24_FELCA (60S ribosomal protein L24 OS=Felis catus GN=RPL24 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.878e-22
Identity = 52/107 (48.60%), Postives = 72/107 (67.29%), Query Frame = 2
Query:   26 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKK-RRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAR 343
            +K ELC FSG KIYPG G R+ R+D +VF F N+KC+  F ++  P ++ WT +YR++HKK  + E  KK+ RRA K  + R+I GA+L  I  +R +KPEVR A R
Sbjct:    1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKKRTRRAVK--FQRAITGASLADIMAKRNQKPEVRKAQR 105          
BLAST of CX289394 vs. ExPASy Swiss-Prot
Match: RL24_BOVIN (60S ribosomal protein L24 OS=Bos taurus GN=RPL24 PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 1.878e-22
Identity = 52/107 (48.60%), Postives = 72/107 (67.29%), Query Frame = 2
Query:   26 LKTELCKFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAAEAVKKK-RRATKKPYSRSIVGATLEVIQKRRTEKPEVRDAAR 343
            +K ELC FSG KIYPG G R+ R+D +VF F N+KC+  F ++  P ++ WT +YR++HKK  + E  KK+ RRA K  + R+I GA+L  I  +R +KPEVR A R
Sbjct:    1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSEEIQKKRTRRAVK--FQRAITGASLADIMAKRNQKPEVRKAQR 105          
The following BLAST results are available for this feature:
BLAST of CX289394 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
RL24_KLULA2.007e-2449.0660S ribosomal protein L24 OS=Kluyveromyces lactis ... [more]
RL24A_YEAST1.301e-2350.0060S ribosomal protein L24-A OS=Saccharomyces cerev... [more]
RL24B_YEAST1.699e-2350.0060S ribosomal protein L24-B OS=Saccharomyces cerev... [more]
RL24_NEUCR4.943e-2351.5260S ribosomal protein L24 OS=Neurospora crassa GN=... [more]
RL24_RAT1.878e-2248.6060S ribosomal protein L24 OS=Rattus norvegicus GN=... [more]
RL24_MOUSE1.878e-2248.6060S ribosomal protein L24 OS=Mus musculus GN=Rpl24... [more]
RL24_MACFA1.878e-2248.6060S ribosomal protein L24 OS=Macaca fascicularis G... [more]
RL24_HUMAN1.878e-2248.6060S ribosomal protein L24 OS=Homo sapiens GN=RPL24... [more]
RL24_FELCA1.878e-2248.6060S ribosomal protein L24 OS=Felis catus GN=RPL24 ... [more]
RL24_BOVIN1.878e-2248.6060S ribosomal protein L24 OS=Bos taurus GN=RPL24 P... [more]

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Properties
Property NameValue
Genbank descriptionC02012F05SK IF1 Citrus clementina cDNA clone C02012F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289394 ID=CX289394; Name=CX289394; organism=Citrus clementina; type=EST; length=344bp
AGCAACACCATCAGAAACCATGGTTCTCAAGACTGAACTTTGCAAATTCA
GCGGTGCCAAGATATACCCTGGTAAGGGTATCAGATTTATTCGTTCAGAC
TCTCAGGTTTTCCTCTTTGCCAATTCTAAATGCAAGAGGTACTTCCACAA
CCGATTGAAGCCATCGAAGCTTACATGGACAGCCATGTACAGGAAACAGC
ACAAGAAGGACATTGCTGCTGAGGCAGTTAAGAAGAAGCGTCGTGCCACT
AAGAAGCCCTATTCAAGATCTATAGTTGGTGCCACCTTGGAAGTTATCCA
GAAGAGAAGAACTGAGAAGCCAGAAGTCCGAGATGCTGCACGGG
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