CX289400

Overview
NameCX289400
Unique NameCX289400
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length411
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289400 vs. ExPASy Swiss-Prot
Match: RS3A_TAEGU (40S ribosomal protein S3a OS=Taeniopygia guttata GN=RPS3A PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.405e-33
Identity = 68/98 (69.39%), Postives = 82/98 (83.67%), Query Frame = 3
Query:  117 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYV 410
            DWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK RVFEVSL DL N+E  A+RK +L  EDVQGKN LTNF GM+ T DK+ S+V+KW T+IEA+V
Sbjct:   29 DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHV 125          
BLAST of CX289400 vs. ExPASy Swiss-Prot
Match: RS3A_RAT (40S ribosomal protein S3a OS=Rattus norvegicus GN=Rps3a PE=1 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 2.405e-33
Identity = 68/98 (69.39%), Postives = 82/98 (83.67%), Query Frame = 3
Query:  117 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYV 410
            DWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK RVFEVSL DL N+E  A+RK +L  EDVQGKN LTNF GM+ T DK+ S+V+KW T+IEA+V
Sbjct:   29 DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHV 125          
BLAST of CX289400 vs. ExPASy Swiss-Prot
Match: RS3A_MOUSE (40S ribosomal protein S3a OS=Mus musculus GN=Rps3a PE=1 SV=3)

HSP 1 Score: 140.584 bits (353), Expect = 2.405e-33
Identity = 68/98 (69.39%), Postives = 82/98 (83.67%), Query Frame = 3
Query:  117 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYV 410
            DWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK RVFEVSL DL N+E  A+RK +L  EDVQGKN LTNF GM+ T DK+ S+V+KW T+IEA+V
Sbjct:   29 DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHV 125          
BLAST of CX289400 vs. ExPASy Swiss-Prot
Match: RS3A_LACBS (40S ribosomal protein S1 OS=Laccaria bicolor (strain S238N-H82) GN=RPS1 PE=3 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 2.405e-33
Identity = 66/98 (67.35%), Postives = 81/98 (82.65%), Query Frame = 3
Query:  117 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYV 410
            DWYDIKAPS F VRNVGKTL  R+QG K A++ LK R+ EVSL DL  +EE ++RKI+LR +++QGKN LTNF GM+FT+DKLRSLVRKW TL+EA+V
Sbjct:   28 DWYDIKAPSIFEVRNVGKTLANRSQGLKNANDSLKGRIIEVSLADLNKDEEQSFRKIKLRIDEIQGKNCLTNFHGMDFTSDKLRSLVRKWQTLVEAHV 125          
BLAST of CX289400 vs. ExPASy Swiss-Prot
Match: RS3A_HUMAN (40S ribosomal protein S3a OS=Homo sapiens GN=RPS3A PE=1 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 2.405e-33
Identity = 68/98 (69.39%), Postives = 82/98 (83.67%), Query Frame = 3
Query:  117 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYV 410
            DWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK RVFEVSL DL N+E  A+RK +L  EDVQGKN LTNF GM+ T DK+ S+V+KW T+IEA+V
Sbjct:   29 DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHV 125          
BLAST of CX289400 vs. ExPASy Swiss-Prot
Match: RS3A_GECJA (40S ribosomal protein S3a OS=Gecko japonicus GN=RPS3A PE=2 SV=3)

HSP 1 Score: 140.584 bits (353), Expect = 2.405e-33
Identity = 68/98 (69.39%), Postives = 82/98 (83.67%), Query Frame = 3
Query:  117 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYV 410
            DWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK RVFEVSL DL N+E  A+RK +L  EDVQGKN LTNF GM+ T DK+ S+V+KW T+IEA+V
Sbjct:   29 DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHV 125          
BLAST of CX289400 vs. ExPASy Swiss-Prot
Match: RS3A_FELCA (40S ribosomal protein S3a (Fragment) OS=Felis catus GN=RPS3A PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.405e-33
Identity = 68/98 (69.39%), Postives = 82/98 (83.67%), Query Frame = 3
Query:  117 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYV 410
            DWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK RVFEVSL DL N+E  A+RK +L  EDVQGKN LTNF GM+ T DK+ S+V+KW T+IEA+V
Sbjct:   25 DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHV 121          
BLAST of CX289400 vs. ExPASy Swiss-Prot
Match: RS3A_EIMTE (40S ribosomal protein S3a OS=Eimeria tenella PE=2 SV=3)

HSP 1 Score: 140.584 bits (353), Expect = 2.405e-33
Identity = 68/98 (69.39%), Postives = 82/98 (83.67%), Query Frame = 3
Query:  117 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYV 410
            DWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK RVFEVSL DL N+E  A+RK +L  EDVQGKN LTNF GM+ T DK+ S+V+KW T+IEA+V
Sbjct:   29 DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMFSMVKKWQTMIEAHV 125          
BLAST of CX289400 vs. ExPASy Swiss-Prot
Match: RS3A_BOVIN (40S ribosomal protein S3a OS=Bos taurus GN=RPS3A PE=2 SV=3)

HSP 1 Score: 140.584 bits (353), Expect = 2.405e-33
Identity = 68/98 (69.39%), Postives = 82/98 (83.67%), Query Frame = 3
Query:  117 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYV 410
            DWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK RVFEVSL DL N+E  A+RK +L  EDVQGKN LTNF GM+ T DK+ S+V+KW T+IEA+V
Sbjct:   29 DWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHV 125          
BLAST of CX289400 vs. ExPASy Swiss-Prot
Match: RS3A_XENTR (40S ribosomal protein S3a OS=Xenopus tropicalis GN=rps3a PE=2 SV=3)

HSP 1 Score: 139.813 bits (351), Expect = 4.102e-33
Identity = 68/98 (69.39%), Postives = 82/98 (83.67%), Query Frame = 3
Query:  117 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYV 410
            DWYD+KAP+ F +RN+GKTLVTRTQGTKIAS+GLK RVFEVSL DL N+E  A+RK +L  EDVQGKN LTNF GM+ T DK+ S+V+KW T+IEA+V
Sbjct:   29 DWYDVKAPAMFNIRNLGKTLVTRTQGTKIASDGLKGRVFEVSLADLQNDEV-AFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHV 125          
The following BLAST results are available for this feature:
BLAST of CX289400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
RS3A_TAEGU2.405e-3369.3940S ribosomal protein S3a OS=Taeniopygia guttata G... [more]
RS3A_RAT2.405e-3369.3940S ribosomal protein S3a OS=Rattus norvegicus GN=... [more]
RS3A_MOUSE2.405e-3369.3940S ribosomal protein S3a OS=Mus musculus GN=Rps3a... [more]
RS3A_LACBS2.405e-3367.3540S ribosomal protein S1 OS=Laccaria bicolor (stra... [more]
RS3A_HUMAN2.405e-3369.3940S ribosomal protein S3a OS=Homo sapiens GN=RPS3A... [more]
RS3A_GECJA2.405e-3369.3940S ribosomal protein S3a OS=Gecko japonicus GN=RP... [more]
RS3A_FELCA2.405e-3369.3940S ribosomal protein S3a (Fragment) OS=Felis catu... [more]
RS3A_EIMTE2.405e-3369.3940S ribosomal protein S3a OS=Eimeria tenella PE=2 ... [more]
RS3A_BOVIN2.405e-3369.3940S ribosomal protein S3a OS=Bos taurus GN=RPS3A P... [more]
RS3A_XENTR4.102e-3369.3940S ribosomal protein S3a OS=Xenopus tropicalis GN... [more]

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Properties
Property NameValue
Genbank descriptionC02012G01SK IF1 Citrus clementina cDNA clone C02012G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289400 ID=CX289400; Name=CX289400; organism=Citrus clementina; type=EST; length=411bp
AGCGGAGCCGTCTCTTGAGCAGCAGCTGCACAAACATGGCTGTCGGGAAG
AACAAGAGGATTTCAAAGGGGAAGAAAGGAGGCAAGAAGAAGGCTGCTGA
TCCGTTTGCCAAGAAGGACTGGTATGATATCAAGGCTCCATCTTGTTTCC
GCGTCAGAAATGTTGGCAAGACTCTTGTTACCCGGACTCAGGGTACCAAG
ATTGCATCAGAAGGTCTCAAGCACAGAGTGTTTGAGGTATCACTAGGTGA
TCTTCTCAATGAAGAAGAGCATGCTTACAGGAAGATCAGACTGAGAGCTG
AAGATGTCCAAGGGAAGAATGTTTTGACTAACTTCTGGGGCATGAATTTC
ACTACAGACAAGCTGAGGTCTTTGGTTAGGAAGTGGCATACCTTGATTGA
AGCTTACGTGG
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