CX289417 | Citrus Genome Database

Overview


Name	CX289417
Unique Name	CX289417
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	378

Libraries


Library Name	Type
IF1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CX289417 vs. ExPASy Swiss-Prot
Match: RAB7A_CANFA (Ras-related protein Rab-7a OS=Canis familiaris GN=RAB7A PE=2 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 3.520e-16
Identity = 24/30 (80.00%), Postives = 27/30 (90.00%), Query Frame = 2

Query:  284 RYVNKKFSNQFKATIGADFLTKEAQFEDRL 373
            +YVNKKFSNQ+KATIGADFLTKE   +DRL
Sbjct:   27 QYVNKKFSNQYKATIGADFLTKEVMVDDRL 56

HSP 2 Score: 50.447 bits (119), Expect = 3.520e-16
Identity = 24/28 (85.71%), Postives = 26/28 (92.86%), Query Frame = 3

Query:   90 MPSRRRTLLKVIILGDSGVGKTSLMNQY 173
            M SR++ LLKVIILGDSGVGKTSLMNQY
Sbjct:    1 MTSRKKVLLKVIILGDSGVGKTSLMNQY 28

[Close]

BLAST of CX289417 vs. ExPASy Swiss-Prot
Match: RAB7A_BOVIN (Ras-related protein Rab-7a OS=Bos taurus GN=RAB7A PE=2 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 3.520e-16
Identity = 24/30 (80.00%), Postives = 27/30 (90.00%), Query Frame = 2

Query:  284 RYVNKKFSNQFKATIGADFLTKEAQFEDRL 373
            +YVNKKFSNQ+KATIGADFLTKE   +DRL
Sbjct:   27 QYVNKKFSNQYKATIGADFLTKEVMVDDRL 56

HSP 2 Score: 50.447 bits (119), Expect = 3.520e-16
Identity = 24/28 (85.71%), Postives = 26/28 (92.86%), Query Frame = 3

Query:   90 MPSRRRTLLKVIILGDSGVGKTSLMNQY 173
            M SR++ LLKVIILGDSGVGKTSLMNQY
Sbjct:    1 MTSRKKVLLKVIILGDSGVGKTSLMNQY 28

[Close]

BLAST of CX289417 vs. ExPASy Swiss-Prot
Match: RAB7_ARATH (Ras-related protein Rab7 OS=Arabidopsis thaliana GN=RAB7 PE=2 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 4.580e-16
Identity = 26/28 (92.86%), Postives = 27/28 (96.43%), Query Frame = 3

Query:   90 MPSRRRTLLKVIILGDSGVGKTSLMNQY 173
            M +RRRTLLKVIILGDSGVGKTSLMNQY
Sbjct:    1 MSTRRRTLLKVIILGDSGVGKTSLMNQY 28

HSP 2 Score: 50.0618 bits (118), Expect = 4.580e-16
Identity = 22/30 (73.33%), Postives = 26/30 (86.67%), Query Frame = 2

Query:  284 RYVNKKFSNQFKATIGADFLTKEAQFEDRL 373
            +YVN KFS Q+KATIGADF+TKE Q +DRL
Sbjct:   27 QYVNNKFSQQYKATIGADFVTKELQIDDRL 56

[Close]

BLAST of CX289417 vs. ExPASy Swiss-Prot
Match: RAB7_SOYBN (Ras-related protein Rab7 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 1.307e-15
Identity = 25/28 (89.29%), Postives = 26/28 (92.86%), Query Frame = 3

Query:   90 MPSRRRTLLKVIILGDSGVGKTSLMNQY 173
            M  RRRTLLKVI+LGDSGVGKTSLMNQY
Sbjct:    1 MSLRRRTLLKVIVLGDSGVGKTSLMNQY 28

HSP 2 Score: 50.0618 bits (118), Expect = 1.307e-15
Identity = 22/30 (73.33%), Postives = 27/30 (90.00%), Query Frame = 2

Query:  284 RYVNKKFSNQFKATIGADFLTKEAQFEDRL 373
            +YV+KKFS Q+KATIGADF+TKE Q +DRL
Sbjct:   27 QYVHKKFSQQYKATIGADFVTKELQIDDRL 56

[Close]

BLAST of CX289417 vs. ExPASy Swiss-Prot
Match: RAB7_VIGAC (Ras-related protein Rab7 OS=Vigna aconitifolia PE=2 SV=1)

HSP 1 Score: 50.8322 bits (120), Expect = 2.869e-15
Identity = 24/28 (85.71%), Postives = 26/28 (92.86%), Query Frame = 3

Query:   90 MPSRRRTLLKVIILGDSGVGKTSLMNQY 173
            M  RRRTLLKVI+LGD+GVGKTSLMNQY
Sbjct:    1 MSLRRRTLLKVIVLGDTGVGKTSLMNQY 28

HSP 2 Score: 50.0618 bits (118), Expect = 2.869e-15
Identity = 22/30 (73.33%), Postives = 27/30 (90.00%), Query Frame = 2

Query:  284 RYVNKKFSNQFKATIGADFLTKEAQFEDRL 373
            +YV+KKFS Q+KATIGADF+TKE Q +DRL
Sbjct:   27 QYVHKKFSQQYKATIGADFVTKELQIDDRL 56

[Close]

BLAST of CX289417 vs. ExPASy Swiss-Prot
Match: RAB7A_DICDI (Ras-related protein Rab-7A OS=Dictyostelium discoideum GN=rab7A PE=1 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 4.847e-15
Identity = 23/30 (76.67%), Postives = 27/30 (90.00%), Query Frame = 2

Query:  284 RYVNKKFSNQFKATIGADFLTKEAQFEDRL 373
            +YVNKKFSNQ+KATIGADFLTKE   +DR+
Sbjct:   27 QYVNKKFSNQYKATIGADFLTKELMVDDRV 56

HSP 2 Score: 48.1358 bits (113), Expect = 4.847e-15
Identity = 22/28 (78.57%), Postives = 26/28 (92.86%), Query Frame = 3

Query:   90 MPSRRRTLLKVIILGDSGVGKTSLMNQY 173
            M ++++ LLKVIILGDSGVGKTSLMNQY
Sbjct:    1 MATKKKVLLKVIILGDSGVGKTSLMNQY 28

[Close]

BLAST of CX289417 vs. ExPASy Swiss-Prot
Match: RAB7_NEUCR (Probable Ras-related protein Rab7 OS=Neurospora crassa GN=17E5.300 PE=3 SV=1)

HSP 1 Score: 50.447 bits (119), Expect = 1.122e-13
Identity = 24/28 (85.71%), Postives = 26/28 (92.86%), Query Frame = 3

Query:   90 MPSRRRTLLKVIILGDSGVGKTSLMNQY 173
            M SR++ LLKVIILGDSGVGKTSLMNQY
Sbjct:    1 MSSRKKVLLKVIILGDSGVGKTSLMNQY 28

HSP 2 Score: 45.0542 bits (105), Expect = 1.122e-13
Identity = 20/29 (68.97%), Postives = 24/29 (82.76%), Query Frame = 2

Query:  284 RYVNKKFSNQFKATIGADFLTKEAQFEDR 370
            +YVNKKFS  +KATIGADFLT+E   +DR
Sbjct:   27 QYVNKKFSASYKATIGADFLTREVLVDDR 55

[Close]

BLAST of CX289417 vs. ExPASy Swiss-Prot
Match: YPTC5_CHLRE (GTP-binding protein YPTC5 OS=Chlamydomonas reinhardtii GN=YPTC5 PE=3 SV=1)

HSP 1 Score: 48.9062 bits (115), Expect = 5.393e-13
Identity = 23/28 (82.14%), Postives = 26/28 (92.86%), Query Frame = 3

Query:   90 MPSRRRTLLKVIILGDSGVGKTSLMNQY 173
            M +++R LLKVIILGDSGVGKTSLMNQY
Sbjct:    1 MSTKKRRLLKVIILGDSGVGKTSLMNQY 28

HSP 2 Score: 44.2838 bits (103), Expect = 5.393e-13
Identity = 18/29 (62.07%), Postives = 25/29 (86.21%), Query Frame = 2

Query:  284 RYVNKKFSNQFKATIGADFLTKEAQFEDR 370
            +YV KKF+ ++KATIGADFLTKE + +D+
Sbjct:   27 QYVQKKFTKEYKATIGADFLTKEIEVDDK 55

[Close]

BLAST of CX289417 vs. ExPASy Swiss-Prot
Match: YPTV5_VOLCA (GTP-binding protein yptV5 OS=Volvox carteri GN=YPTV5 PE=3 SV=1)

HSP 1 Score: 47.3654 bits (111), Expect = 1.535e-12
Identity = 21/28 (75.00%), Postives = 26/28 (92.86%), Query Frame = 3

Query:   90 MPSRRRTLLKVIILGDSGVGKTSLMNQY 173
            M +++R +LK+IILGDSGVGKTSLMNQY
Sbjct:    1 MSTKKRRVLKIIILGDSGVGKTSLMNQY 28

HSP 2 Score: 44.2838 bits (103), Expect = 1.535e-12
Identity = 18/29 (62.07%), Postives = 25/29 (86.21%), Query Frame = 2

Query:  284 RYVNKKFSNQFKATIGADFLTKEAQFEDR 370
            +YV KKF+ ++KATIGADFLTKE + +D+
Sbjct:   27 QYVQKKFTKEYKATIGADFLTKEIEVDDK 55

[Close]

BLAST of CX289417 vs. ExPASy Swiss-Prot
Match: YPT7_SCHPO (GTP-binding protein ypt7 OS=Schizosaccharomyces pombe GN=ypt7 PE=2 SV=1)

HSP 1 Score: 45.0542 bits (105), Expect = 5.670e-12
Identity = 19/30 (63.33%), Postives = 25/30 (83.33%), Query Frame = 2

Query:  284 RYVNKKFSNQFKATIGADFLTKEAQFEDRL 373
            +YVN+KFS  +KATIGADFLTKE   +D++
Sbjct:   27 QYVNRKFSKDYKATIGADFLTKEVLVDDKV 56

HSP 2 Score: 44.669 bits (104), Expect = 5.670e-12
Identity = 20/28 (71.43%), Postives = 25/28 (89.29%), Query Frame = 3

Query:   90 MPSRRRTLLKVIILGDSGVGKTSLMNQY 173
            M  +++ LLKVIILG+SGVGKTS+MNQY
Sbjct:    1 MAGKKKHLLKVIILGESGVGKTSIMNQY 28

The following BLAST results are available for this feature:

BLAST of CX289417 vs. ExPASy Swiss-Prot

BLAST of CX289417 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22


Match Name	E-value	Identity	Description
RAB7A_CANFA	3.520e-16	80.00	Ras-related protein Rab-7a OS=Canis familiaris GN=...	[more]
RAB7A_BOVIN	3.520e-16	80.00	Ras-related protein Rab-7a OS=Bos taurus GN=RAB7A ...	[more]
RAB7_ARATH	4.580e-16	92.86	Ras-related protein Rab7 OS=Arabidopsis thaliana G...	[more]
RAB7_SOYBN	1.307e-15	89.29	Ras-related protein Rab7 OS=Glycine max PE=2 SV=1	[more]
RAB7_VIGAC	2.869e-15	85.71	Ras-related protein Rab7 OS=Vigna aconitifolia PE=...	[more]
RAB7A_DICDI	4.847e-15	76.67	Ras-related protein Rab-7A OS=Dictyostelium discoi...	[more]
RAB7_NEUCR	1.122e-13	85.71	Probable Ras-related protein Rab7 OS=Neurospora cr...	[more]
YPTC5_CHLRE	5.393e-13	82.14	GTP-binding protein YPTC5 OS=Chlamydomonas reinhar...	[more]
YPTV5_VOLCA	1.535e-12	75.00	GTP-binding protein yptV5 OS=Volvox carteri GN=YPT...	[more]
YPT7_SCHPO	5.670e-12	63.33	GTP-binding protein ypt7 OS=Schizosaccharomyces po...	[more]

Pages

Properties


Property Name	Value
Genbank description	C02012H09SK IF1 Citrus clementina cDNA clone C02012H09, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX289417 ID=CX289417; Name=CX289417; organism=Citrus clementina; type=EST; length=378bp
AATAACAACTACGGAGCACATCAAAACGATCAACTGATTTGCGTTTGGAG
GTAGATCGTTCGATCGATTGACCGATTTTCCCCAGAACGATGCCGTCTCG
TAGAAGAACTCTCCTCAAGGTCATCATCCTCGGCGACAGCGGGGTGGGCA
AGACCTCTTTGATGAATCAGTATCCTTTCGAGTTCTTTTTATTTTTCTAT
TTGAAGTAATTGTGTTTACTTTAAGATTTATGGCAGATTGTTCTCTGTGT
TTTGATGTTGATTTGGCTCGACATTTAACTTAAAGATATGTAAACAAGAA
GTTTAGCAATCAGTTCAAGGCGACCATCGGAGCTGATTTCTTGACAAAGG
AAGCGCAGTTTGAAGATAGGCTCTTCAC