CX289417

Overview
NameCX289417
Unique NameCX289417
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length378
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289417 vs. ExPASy Swiss-Prot
Match: YPT7_YEAST (GTP-binding protein YPT7 OS=Saccharomyces cerevisiae GN=YPT7 PE=1 SV=1)

HSP 1 Score: 46.2098 bits (108), Expect = 7.359e-12
Identity = 21/28 (75.00%), Postives = 26/28 (92.86%), Query Frame = 3
Query:   90 MPSRRRTLLKVIILGDSGVGKTSLMNQY 173
            M SR++ +LKVIILGDSGVGKTSLM++Y
Sbjct:    1 MSSRKKNILKVIILGDSGVGKTSLMHRY 28          

HSP 2 Score: 43.1282 bits (100), Expect = 7.359e-12
Identity = 19/23 (82.61%), Postives = 21/23 (91.30%), Query Frame = 2
Query:  284 RYVNKKFSNQFKATIGADFLTKE 352
            RYVN K+S Q+KATIGADFLTKE
Sbjct:   27 RYVNDKYSQQYKATIGADFLTKE 49          
BLAST of CX289417 vs. ExPASy Swiss-Prot
Match: YPT71_SCHPO (GTP-binding protein ypt71 OS=Schizosaccharomyces pombe GN=ypt71 PE=2 SV=1)

HSP 1 Score: 43.8986 bits (102), Expect = 2.716e-11
Identity = 18/30 (60.00%), Postives = 26/30 (86.67%), Query Frame = 2
Query:  284 RYVNKKFSNQFKATIGADFLTKEAQFEDRL 373
            ++VN+KFS ++KATIGADFLTK+   +D+L
Sbjct:   27 QFVNQKFSREYKATIGADFLTKDVVVDDKL 56          

HSP 2 Score: 43.5134 bits (101), Expect = 2.716e-11
Identity = 19/28 (67.86%), Postives = 24/28 (85.71%), Query Frame = 3
Query:   90 MPSRRRTLLKVIILGDSGVGKTSLMNQY 173
            M +++R  LKV+ILGDSGVGKT LMNQ+
Sbjct:    1 MSAQKRVFLKVVILGDSGVGKTCLMNQF 28          
The following BLAST results are available for this feature:
BLAST of CX289417 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
YPT7_YEAST7.359e-1275.00GTP-binding protein YPT7 OS=Saccharomyces cerevisi... [more]
YPT71_SCHPO2.716e-1160.00GTP-binding protein ypt71 OS=Schizosaccharomyces p... [more]

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Properties
Property NameValue
Genbank descriptionC02012H09SK IF1 Citrus clementina cDNA clone C02012H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289417 ID=CX289417; Name=CX289417; organism=Citrus clementina; type=EST; length=378bp
AATAACAACTACGGAGCACATCAAAACGATCAACTGATTTGCGTTTGGAG
GTAGATCGTTCGATCGATTGACCGATTTTCCCCAGAACGATGCCGTCTCG
TAGAAGAACTCTCCTCAAGGTCATCATCCTCGGCGACAGCGGGGTGGGCA
AGACCTCTTTGATGAATCAGTATCCTTTCGAGTTCTTTTTATTTTTCTAT
TTGAAGTAATTGTGTTTACTTTAAGATTTATGGCAGATTGTTCTCTGTGT
TTTGATGTTGATTTGGCTCGACATTTAACTTAAAGATATGTAAACAAGAA
GTTTAGCAATCAGTTCAAGGCGACCATCGGAGCTGATTTCTTGACAAAGG
AAGCGCAGTTTGAAGATAGGCTCTTCAC
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