CX290879

Overview
NameCX290879
Unique NameCX290879
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length553
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7096 contig Ccv1_Contig7096:7..557. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290879 vs. ExPASy Swiss-Prot
Match: AKCL2_PIG (1,5-anhydro-D-fructose reductase OS=Sus scrofa GN=AKR1E2 PE=1 SV=2)

HSP 1 Score: 50.447 bits (119), Expect = 7.527e-11
Identity = 30/74 (40.54%), Postives = 42/74 (56.76%), Query Frame = 1
Query:   91 KSIPLVGFGTVEYPLNEAFKERVLHAIKLGYRHFDTAAAYPSEQPLGEALTEALRLGLVQSGDELFITSKLWLT 312
            + IP++G GT +    E   E V  AI  GYRHFD A  Y +E  +G  +   +  G+V+  ++LFI SKLW T
Sbjct:    2 EKIPVLGLGTWQAAPGEV-TEAVKVAIDTGYRHFDCAYLYHNENEVGVGIQAKIDEGVVRR-EDLFIVSKLWCT 73          

HSP 2 Score: 35.4242 bits (80), Expect = 7.527e-11
Identity = 21/55 (38.18%), Postives = 30/55 (54.55%), Query Frame = 2
Query:  341 AYKKTLKTLGLEYLDLYLVHFPVSLIL-EATCPVKPEDI---RSFDYEGVWEEME 493
            A  ++LK L L+YLDLYL+H+P+     E   PV    +    + D+   WE ME
Sbjct:   83 ACTRSLKALKLQYLDLYLIHWPMGFKPGEVDLPVDRSGMIVASNTDFLDTWEAME 137          
BLAST of CX290879 vs. ExPASy Swiss-Prot
Match: XYL1_TRIRE (NAD(P)H-dependent D-xylose reductase OS=Trichoderma reesei GN=xyl1 PE=3 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 9.748e-11
Identity = 36/94 (38.30%), Postives = 53/94 (56.38%), Query Frame = 1
Query:   82 STGKSIPLVGFGTVEYPLNEAFKERVLHAIKLGYRHFDTAAAYPSEQPLGEALTEALRLGLVQSGDELFITSKLWLTDSYRGRVIPGLQKNSQD 363
            ++G  +P VGFG  +   N    + V +AIK GYR FD A  Y +E+  GE +  A++ GLV+  ++LFI SKLW T     +V P  ++   D
Sbjct:    9 NSGYDMPQVGFGLWKVD-NAVCADTVYNAIKAGYRLFDGACDYGNEKECGEGVARAIKDGLVKR-EDLFIVSKLWQTFHDEDKVEPITRRQLAD 100          

HSP 2 Score: 27.335 bits (59), Expect = 9.748e-11
Identity = 10/23 (43.48%), Postives = 16/23 (69.57%), Query Frame = 2
Query:  347 KKTLKTLGLEYLDLYLVHFPVSL 415
            ++ L    ++Y DL+LVHFP +L
Sbjct:   95 RRQLADWQIDYFDLFLVHFPAAL 117          
BLAST of CX290879 vs. ExPASy Swiss-Prot
Match: Y2408_MYCS2 (Uncharacterized oxidoreductase MSMEG_2408 OS=Mycobacterium smegmatis GN=MSMEG_2408 PE=3 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 9.801e-11
Identity = 29/76 (38.16%), Postives = 45/76 (59.21%), Query Frame = 1
Query:   88 GKSIPLVGFGTVEYPLNEAFKERVLHAIKLGYRHFDTAAAYPSEQPLGEALTEALRLGLVQSGDELFITSKLWLTD 315
            G SIP VG G  + P  +  +  V  A++ GYRH DTAAAY +E   G A+  +   G+ +  +++F+ +KLW +D
Sbjct:   10 GNSIPQVGLGVWQTPAEDT-ERAVAAALQAGYRHIDTAAAYRNETETGRAIANS---GVPR--EDIFLVTKLWNSD 79          

HSP 2 Score: 33.4982 bits (75), Expect = 9.801e-11
Identity = 12/23 (52.17%), Postives = 20/23 (86.96%), Query Frame = 2
Query:  341 AYKKTLKTLGLEYLDLYLVHFPV 409
            A+  +++ LG++YLDLYL+H+PV
Sbjct:   88 AFDASVQRLGVDYLDLYLIHWPV 110          
The following BLAST results are available for this feature:
BLAST of CX290879 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
AKCL2_PIG7.527e-1140.541,5-anhydro-D-fructose reductase OS=Sus scrofa GN=... [more]
XYL1_TRIRE9.748e-1138.30NAD(P)H-dependent D-xylose reductase OS=Trichoderm... [more]
Y2408_MYCS29.801e-1138.16Uncharacterized oxidoreductase MSMEG_2408 OS=Mycob... [more]

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Properties
Property NameValue
Genbank descriptionC03001C03Rv OF1 Citrus clementina cDNA clone C03001C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290879 ID=CX290879; Name=CX290879; organism=Citrus clementina; type=EST; length=553bp
TGGAATCATTGTGGTAATTTAGCTAGGCAAATACTGGATAGGAGGAAAAT
GAGGACGGCCATTCCAGAAGAACCCTTGGGCTCAACAGGGAAATCGATTC
CTCTTGTAGGCTTTGGAACCGTTGAATATCCATTGAATGAAGCCTTTAAA
GAACGCGTTCTGCATGCAATTAAGCTGGGGTATAGACACTTTGATACTGC
TGCAGCTTACCCATCCGAGCAACCTCTTGGCGAAGCATTAACTGAAGCTT
TACGTCTTGGCCTCGTTCAATCCGGCGACGAGCTTTTCATCACCTCAAAA
CTCTGGCTCACCGACTCCTATCGCGGCCGTGTCATCCCGGGCCTACAAAA
AAACTCTCAAGACTCTTGGATTGGAGTACCTTGATCTCTATCTAGTTCAT
TTTCCGGTAAGCTTGATTCTAGAGGCGACGTGTCCTGTGAAACCGGAGGA
TATTCGTTCATTTGACTATGAGGGTGTTTGGGAGGAAATGGAGAAATGTC
AAGAGCTAGGTCCTACAAAAAAAAAAAGGAGTAAGTAACTTTACATGCAA
GAA
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