CX290882

Overview
NameCX290882
Unique NameCX290882
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length333
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290882 vs. ExPASy Swiss-Prot
Match: UBA1_HUMAN (Ubiquitin-like modifier-activating enzyme 1 OS=Homo sapiens GN=UBA1 PE=1 SV=3)

HSP 1 Score: 113.62 bits (283), Expect = 3.142e-25
Identity = 54/112 (48.21%), Postives = 79/112 (70.54%), Query Frame = 2
Query:    2 FHPLYQFFYFDSVESLPTEPLDSTEFKPIN--SRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITADDVIAQSNLSRQFLFRDWNIGQAK 331
            F P+ Q+ YFD++E LP +    TE K +   +RYD Q++VFG+ LQ+KL   K F+VG+GA+GCE LKN A++G+ CG  G++ +T  D I +SNL+RQFLFR W++ + K
Sbjct:  417 FMPIMQWLYFDALECLPEDKEVLTEDKCLQRQNRYDGQVAVFGSDLQEKLGKQKYFLVGAGAIGCELLKNFAMIGLGCGEGGEIIVTDMDTIEKSNLNRQFLFRPWDVTKLK 528          
BLAST of CX290882 vs. ExPASy Swiss-Prot
Match: UBA1_BOVIN (Ubiquitin-like modifier-activating enzyme 1 OS=Bos taurus GN=UBA1 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.142e-25
Identity = 53/112 (47.32%), Postives = 78/112 (69.64%), Query Frame = 2
Query:    2 FHPLYQFFYFDSVESLPTEPLDSTEFK--PINSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITADDVIAQSNLSRQFLFRDWNIGQAK 331
            F P+ Q+ YFD++E LP +    TE K  P  +RYD Q++VFG+ LQ++L   K F+VG+GA+GCE LKN A++G+ C   G++ +T  D I +SNL+RQFLFR W++ + K
Sbjct:  417 FMPIMQWLYFDALECLPEDKEALTEDKCLPRQNRYDGQVAVFGSDLQERLGKQKYFLVGAGAIGCELLKNFAMIGLGCAEDGEIVVTDMDTIEKSNLNRQFLFRPWDVTKLK 528          
BLAST of CX290882 vs. ExPASy Swiss-Prot
Match: UBA7_HUMAN (Ubiquitin-like modifier-activating enzyme 7 OS=Homo sapiens GN=UBA7 PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 1.614e-21
Identity = 57/113 (50.44%), Postives = 74/113 (65.49%), Query Frame = 2
Query:    2 FHPLYQFFYFDSVESLPT--EPLDSTEFKPIN-SRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQGKLTITADDVIAQSNLSRQFLFRDWNIGQAK 331
            F PL Q+ YFD+++ LP   E L S E   +  SRYD QI+VFGA  Q+KL      +VG+GA+GCE LK  AL+G+  GN G LT+   D I +SNLSRQFLFR  ++G+ K
Sbjct:  380 FMPLDQWLYFDALDCLPEDGELLPSPEDCALRGSRYDGQIAVFGAGFQEKLRRQHYLLVGAGAIGCELLKVFALVGLGAGNSGGLTVVDMDHIERSNLSRQFLFRSQDVGRPK 492          
BLAST of CX290882 vs. ExPASy Swiss-Prot
Match: UBA6_MOUSE (Ubiquitin-like modifier-activating enzyme 6 OS=Mus musculus GN=Uba6 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.720e-18
Identity = 53/114 (46.49%), Postives = 72/114 (63.16%), Query Frame = 2
Query:    2 FHPLYQFFYF---DSVESLPTEPLDSTEFKPINSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQ-GKLTITADDVIAQSNLSRQFLFRDWNIGQAK 331
            F PL Q+ Y    D+VESL     +  EF P   RYDA  +  G  L +KL++  +F+VG GA+GCE LKN AL+GV  G + G +T+T  D+I +SNL+RQFLFR  +I + K
Sbjct:  410 FSPLCQWLYLEAADTVESLGNPGHE--EFLPRGDRYDAIRACIGNTLCQKLQNLNIFLVGCGAIGCEMLKNFALLGVGTGREKGMVTVTDPDLIEKSNLNRQFLFRPHHIQKPK 521          
BLAST of CX290882 vs. ExPASy Swiss-Prot
Match: UBA6_HUMAN (Ubiquitin-like modifier-activating enzyme 6 OS=Homo sapiens GN=UBA6 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.414e-17
Identity = 52/114 (45.61%), Postives = 70/114 (61.40%), Query Frame = 2
Query:    2 FHPLYQFFYF---DSVESLPTEPLDSTEFKPINSRYDAQISVFGAKLQKKLEDAKVFIVGSGALGCEFLKNVALMGVSCGNQ-GKLTITADDVIAQSNLSRQFLFRDWNIGQAK 331
            F PL Q+ Y    D VESL     +  EF P   RYDA  +  G  L +KL++  +F+VG GA+GCE LKN AL+GV    + G +T+T  D+I +SNL+RQFLFR  +I + K
Sbjct:  410 FSPLCQWLYLEAADIVESLGKPECE--EFLPRGDRYDALRACIGDTLCQKLQNLNIFLVGCGAIGCEMLKNFALLGVGTSKEKGMITVTDPDLIEKSNLNRQFLFRPHHIQKPK 521          
The following BLAST results are available for this feature:
BLAST of CX290882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
UBA1_HUMAN3.142e-2548.21Ubiquitin-like modifier-activating enzyme 1 OS=Hom... [more]
UBA1_BOVIN3.142e-2547.32Ubiquitin-like modifier-activating enzyme 1 OS=Bos... [more]
UBA7_HUMAN1.614e-2150.44Ubiquitin-like modifier-activating enzyme 7 OS=Hom... [more]
UBA6_MOUSE3.720e-1846.49Ubiquitin-like modifier-activating enzyme 6 OS=Mus... [more]
UBA6_HUMAN1.414e-1745.61Ubiquitin-like modifier-activating enzyme 6 OS=Hom... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC03001C06Rv OF1 Citrus clementina cDNA clone C03001C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290882 ID=CX290882; Name=CX290882; organism=Citrus clementina; type=EST; length=333bp
GTTCCATCCTCTTTATCAGTTCTTCTATTTTGATTCTGTGGAGTCACTTC
CTACCGAGCCTCTGGATTCCACTGAATTTAAACCAATTAATAGCCGCTAT
GATGCACAAATTTCTGTGTTTGGGGCCAAGCTCCAGAAGAAGCTGGAGGA
TGCTAAAGTGTTCATTGTAGGATCTGGTGCACTTGGGTGTGAGTTCTTAA
AGAATGTGGCGCTGATGGGAGTTTCATGTGGTAATCAAGGAAAACTAACT
ATTACTGCTGATGATGTAATTGCACAGAGTAACCTTAGTAGGCAGTTCCT
CTTCCGTGACTGGAATATTGGGCAGGCCAAATC
back to top