CX290884

Overview
NameCX290884
Unique NameCX290884
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length535
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8343 contig Ccv1_Contig8343:1019..1553. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290884 vs. ExPASy Swiss-Prot
Match: S13A2_HUMAN (Solute carrier family 13 member 2 OS=Homo sapiens GN=SLC13A2 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 4.021e-29
Identity = 73/188 (38.83%), Postives = 108/188 (57.45%), Query Frame = 2
Query:   32 GWGALFNDRA------GDGTASVVMATLLFIIPS----MKQKGEK---------LMDWNKC-KKLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTG 535
            GWG L    A       DGT ++ +  ++FIIPS    + Q  E          L+DW    +K+PWNI+LLLG G+A+A G   SGL++ L   L  L++ P  AIA I+ L+ A  TE TSN ATTT+ LP+L  +A+ + +HPL +M+P  +    +F+LP  TP N + F+ G +++ DM + G
Sbjct:  353 GWGNLAFPNAKGESMVSDGTVAIFIGIIMFIIPSKFPGLTQDPENPGKLKAPLGLLDWKTVNQKMPWNIVLLLGGGYALAKGSERSGLSEWLGNKLTPLQSVPAPAIAIILSLLVATFTECTSNVATTTIFLPILASMAQAICLHPLYVMLPCTLATSLAFMLPVATPPNAIVFSFGDLKVLDMARAG 540          
BLAST of CX290884 vs. ExPASy Swiss-Prot
Match: S13A2_MOUSE (Solute carrier family 13 member 2 OS=Mus musculus GN=Slc13a2 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.170e-28
Identity = 73/189 (38.62%), Postives = 109/189 (57.67%), Query Frame = 2
Query:   29 PGWG-ALFNDRAG-----DGTASVVMATLLFIIPSM--------KQKGE-----KLMDWNKCK-KLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTG 535
            PGWG   F ++ G     DGT ++ ++ ++FIIPS         K+ G+      ++ W     K+PWNI++LLG GFA+A G   SGL+  L   L  L+  P  A   I+ L+ AI TE TSN ATTTL LP+L  +A+ + +HPL +M+P  + A  +F+LP  TP N + F+ G +++ DM + G
Sbjct:  347 PGWGDTAFANKKGQSMVSDGTVAIFISLIMFIIPSKIPGLTEDPKKPGKLKAPPAILTWKTVNDKMPWNILILLGGGFALAKGSEESGLSKWLGDKLTPLQHVPPSATVLILSLLVAIFTECTSNVATTTLFLPILASMAQAICLHPLYVMLPCTLAASLAFMLPVATPPNAIVFSFGGLKVSDMARAG 535          
BLAST of CX290884 vs. ExPASy Swiss-Prot
Match: S13A1_HUMAN (Solute carrier family 13 member 1 OS=Homo sapiens GN=SLC13A1 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 3.404e-28
Identity = 68/186 (36.56%), Postives = 106/186 (56.99%), Query Frame = 2
Query:   26 IPGWGALFNDRAG---DGTASVVMATLLFIIPSMK-----QKGE-------KLMDWNKCKK-LPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTG 535
            +PGW ALF++  G   D T ++++  L F+IP+         GE        L+ W + +  +PW+I +L+G GFA+ADG   SGL+  +   L  L + P   I  I  L+   +TE  SN AT TL LP+L  +A+ +HV+PL +++P  +   F+FLLP   P N + F+ GH+++ DM+K G
Sbjct:  369 VPGWSALFSEYPGFATDSTVALLIGLLFFLIPAKTLTKTTPTGEIVAFDYSPLITWKEFQSFMPWDIAILVGGGFALADGCEESGLSKWIGNKLSPLGSLPAWLIILISSLMVTSLTEVASNPATITLFLPILSPLAEAIHVNPLYILIPSTLCTSFAFLLPVANPPNAIVFSYGHLKVIDMVKAG 554          
BLAST of CX290884 vs. ExPASy Swiss-Prot
Match: NAD1_CAEEL (Sodium-dependent low-affinity dicarboxylate transporter 1 OS=Caenorhabditis elegans GN=nac-1 PE=2 SV=3)

HSP 1 Score: 123.25 bits (308), Expect = 7.583e-28
Identity = 59/182 (32.42%), Postives = 105/182 (57.69%), Query Frame = 2
Query:   26 IPGWGALFNDR-AGDGTASVVMATLLFIIPS----------MKQKGEKLMDWNKCK-KLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTG 535
            +PGWG +F D    D T+++ +  LLF +P            ++    L+DW   + + PW+++ LLG GFA+A GV+ SGL+ D+   + +L+   +  I  I  +IS  +T   SN    ++ +P++ ++A+++ + PL  M+P  I A F+FLLP  TP N + F++G++++ DM  +G
Sbjct:  343 VPGWGEMFKDEFVSDATSAMFIVILLFTLPEKLPSSRGSSEQRKASSGLLDWATVQDRFPWSVLFLLGGGFALAAGVKESGLSHDIGAIMRYLDVFNHNIIMLICIIISVTLTNVCSNTVIASIFIPIVAELARSLEIDPLNFMLPVTISASFAFLLPVATPPNAIVFSSGYLKVFDMFVSG 524          
BLAST of CX290884 vs. ExPASy Swiss-Prot
Match: YKG6_CAEEL (Uncharacterized transporter B0285.6 OS=Caenorhabditis elegans GN=B0285.6 PE=2 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 9.904e-28
Identity = 68/187 (36.36%), Postives = 108/187 (57.75%), Query Frame = 2
Query:   26 IPGWGALFNDR-AGDGTASVVMATLLFIIPSMKQ--------------KGEKLMDWNKCKK-LPWNIILLLGAGFAIADGVRTSGLADDLSKALDF-LEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTG 535
            IPGW  LF      D  + +V   LLFI P  K               + E L+DW+  ++  PW+IILLLGAGFAI+D VR SGL+  ++ +L+  +   P+  +  I+ ++  ++TEF++N+AT ++ +P+  ++A+ +  HPL   +P AIG  FSF+LP  TP+N + + T  I + DM+  G
Sbjct:  344 IPGWSDLFRKGYVTDSCSGLVAVFLLFIWPKKKPDFRIFRKDKSRPSVRQEPLIDWDCVRRRFPWSIILLLGAGFAISDAVRVSGLSSLIACSLNSTISKMPFFVMQIILSIVVVVMTEFSTNSATASIFIPISFKMAEAVGAHPLYFSIPTAIGPSFSFMLPMATPANAIVYETKTIRMIDMVSCG 530          
BLAST of CX290884 vs. ExPASy Swiss-Prot
Match: S13A1_RAT (Solute carrier family 13 member 1 OS=Rattus norvegicus GN=Slc13a1 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.882e-27
Identity = 66/186 (35.48%), Postives = 105/186 (56.45%), Query Frame = 2
Query:   26 IPGWGALFNDRAG---DGTASVVMATLLFIIPSMK-----QKGE-------KLMDWNKCKK-LPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTG 535
            + GW  LF++  G   D T ++V   L F+IP+ K       G+        L+ W + +  +PW+I +L+G GFA+ADG + SGL+  +   L  L + P   I  I  LI   +TE  SN AT T++ P+L  +A+ +HV+PL +++P  +   F+FLLP   P N + F+ GH+++ DM+K G
Sbjct:  369 VTGWSVLFSEYPGYVTDSTVALVAGILFFLIPAKKLTKMTSTGDIIAFDYSPLITWKEFQSFMPWDIAILVGGGFALADGCQVSGLSSWIGSKLSPLGSLPVWLIILISSLIVTSLTEVASNPATITILFPILSPLAEAIHVNPLHILLPSTLCTSFAFLLPVANPPNAIVFSYGHLKVIDMVKAG 554          
BLAST of CX290884 vs. ExPASy Swiss-Prot
Match: S13A1_MOUSE (Solute carrier family 13 member 1 OS=Mus musculus GN=Slc13a1 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 6.419e-27
Identity = 66/186 (35.48%), Postives = 105/186 (56.45%), Query Frame = 2
Query:   26 IPGWGALFNDRAG---DGTASVVMATLLFIIPSMK-----QKGE-------KLMDWNKCKK-LPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTG 535
            + GW  LF++  G   D T ++V   L F+IP+ K       GE        L+ W + +  +PW+I +L+G GFA+ADG + SGL++ +   L  L + P   I  I  LI   +TE  SN AT T++ P+L  +A+ + V+PL +++P  +   F+FLLP   P N + F+ GH+++ DM+K G
Sbjct:  368 VTGWSVLFSEYPGYVTDSTVALVAGILFFLIPAKKVTKMTSAGEIIAFDYTPLITWKEFQSFMPWDIAILVGGGFALADGCQVSGLSNWIGSKLSPLGSLPVRLIILISSLIVTSLTEVASNPATITILFPILSPLAEAIQVNPLQILLPSTLCTSFAFLLPVANPPNAIVFSYGHLKVIDMVKAG 553          
BLAST of CX290884 vs. ExPASy Swiss-Prot
Match: NAD3_CAEEL (Sodium-dependent high-affinity dicarboxylate transporter 3 OS=Caenorhabditis elegans GN=nac-3 PE=2 SV=3)

HSP 1 Score: 119.783 bits (299), Expect = 8.384e-27
Identity = 63/185 (34.05%), Postives = 107/185 (57.84%), Query Frame = 2
Query:   26 IPGWGALFNDRA-GDGTASVVMATLLFIIPS-------------MKQKGEKLMDWNKCKK-LPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTG 535
            +PG+G  F   A  D T+++++A LLF++PS             +K++G  LMDW   ++  PW+++LLLG GFA+A GV+ SGL+  +  +L  +E  P   +  +  LI+ +IT   SN  T ++ +P++  +A+    HP  LM+P  + + F+F+ P GTP N + F +G +++ DM   G
Sbjct:  342 VPGFGVFFKKGAYTDATSAMIVAFLLFVLPSERPDLATYIKKEDLKKRG-CLMDWKTMQETFPWSVVLLLGGGFALAAGVKESGLSLLIGNSLSSIEHLPLWILQLLTMLIAMVITNICSNTVTASIFVPIVATLAQRAGHHPFTLMLPTTLASSFAFIFPVGTPPNAIVFGSGMVKVSDMAFVG 525          
BLAST of CX290884 vs. ExPASy Swiss-Prot
Match: NAD2_CAEEL (Sodium-dependent high-affinity dicarboxylate transporter 2 OS=Caenorhabditis elegans GN=nac-2 PE=2 SV=3)

HSP 1 Score: 98.5969 bits (244), Expect = 2.000e-20
Identity = 60/177 (33.90%), Postives = 95/177 (53.67%), Query Frame = 2
Query:   29 PGWGALFNDR--AGDGTASVVMATLLFIIPSMK----QKGEKLMDWNKCK-KLPWNIILLLGAGFAIADGVRTSGLADDLSKAL-DFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTG 535
            PGWG L   R    D  + V+++ +LF+ P            ++ W   K K  W+  LL+GAG+AI++GV  SGL+  +S  + +       L +   V  I  I+TEF SN +T ++ +P+ + +A++M VHPL L +P  +   F+F+LP  TP N V + T  I + +MI  G
Sbjct:  331 PGWGDLLPHRNFISDSVSGVLISCILFVWPKDPFDPIDPMAPILKWTDMKSKFSWSCTLLIGAGYAISEGVDKSGLSRLISCGMKNIFVGMSSLPLQLTVTTIIVIMTEFASNVSTGSIFIPISLGVAESMGVHPLYLALPTTVACSFAFMLPISTPPNAVVYDTKVISMVEMIVCG 507          
BLAST of CX290884 vs. ExPASy Swiss-Prot
Match: INDY1_DROME (Protein I'm not dead yet OS=Drosophila melanogaster GN=Indy PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.098e-18
Identity = 51/185 (27.57%), Postives = 95/185 (51.35%), Query Frame = 2
Query:   32 GWGALFNDR-AGDGTASVVMATLLFIIPS-------MKQKG--------EKLMDWNKCK-KLPWNIILLLGAGFAIADGVRTSGLADDLSKALDFLEAAPYLAIAPIVCLISAIITEFTSNNATTTLVLPLLIQIAKTMHVHPLLLMVPGAIGAQFSFLLPTGTPSNIVGFTTGHIEIQDMIKTG 535
            GW  L N +   +   ++ +  + F++P+         ++G          L+ W   + K+PW ++ LLG GFA+A+G + SG+A  +  AL  L+  P   +  +V L++  +T F+SN A   +++P+L +++  + +HPL L++P  +    +F LP  TP N +     +I  +DM   G
Sbjct:  360 GWADLLNSKDIRNSMPTIFVVVMCFMLPANYAFLRYCTRRGGPVPTGPTPSLITWKFIQTKVPWGLVFLLGGGFALAEGSKQSGMAKLIGNALIGLKVLPNSVLLLVVILVAVFLTAFSSNVAIANIIIPVLAEMSLAIEIHPLYLILPAGLACSMAFHLPVSTPPNALVAGYANIRTKDMAIAG 544          
The following BLAST results are available for this feature:
BLAST of CX290884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
S13A2_HUMAN4.021e-2938.83Solute carrier family 13 member 2 OS=Homo sapiens ... [more]
S13A2_MOUSE1.170e-2838.62Solute carrier family 13 member 2 OS=Mus musculus ... [more]
S13A1_HUMAN3.404e-2836.56Solute carrier family 13 member 1 OS=Homo sapiens ... [more]
NAD1_CAEEL7.583e-2832.42Sodium-dependent low-affinity dicarboxylate transp... [more]
YKG6_CAEEL9.904e-2836.36Uncharacterized transporter B0285.6 OS=Caenorhabdi... [more]
S13A1_RAT2.882e-2735.48Solute carrier family 13 member 1 OS=Rattus norveg... [more]
S13A1_MOUSE6.419e-2735.48Solute carrier family 13 member 1 OS=Mus musculus ... [more]
NAD3_CAEEL8.384e-2734.05Sodium-dependent high-affinity dicarboxylate trans... [more]
NAD2_CAEEL2.000e-2033.90Sodium-dependent high-affinity dicarboxylate trans... [more]
INDY1_DROME1.098e-1827.57Protein I'm not dead yet OS=Drosophila melanogaste... [more]

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Properties
Property NameValue
Genbank descriptionC03001C09Rv OF1 Citrus clementina cDNA clone C03001C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290884 ID=CX290884; Name=CX290884; organism=Citrus clementina; type=EST; length=535bp
GATGACAAGATCAATAACAGATGACATTCCAGGTTGGGGAGCACTCTTCA
ATGACCGTGCTGGTGATGGAACTGCTAGTGTTGTGATGGCAACATTGTTG
TTCATAATTCCGAGCATGAAGCAAAAGGGAGAAAAATTGATGGATTGGAA
CAAATGCAAGAAGCTACCTTGGAACATTATATTGCTTTTAGGGGCTGGCT
TTGCTATAGCTGATGGAGTCAGGACTAGCGGTCTTGCTGATGATCTGTCA
AAAGCATTGGATTTCCTGGAGGCGGCGCCATATTTAGCCATTGCACCTAT
CGTATGTCTGATTAGCGCGATTATTACTGAATTCACATCAAATAATGCCA
CAACAACTCTCGTTCTTCCACTTCTGATCCAAATAGCAAAAACTATGCAT
GTTCATCCATTGCTTCTTATGGTTCCTGGAGCAATTGGAGCACAATTTTC
TTTCTTGTTGCCGACTGGAACCCCTTCAAATATTGTTGGATTCACAACCG
GGCACATCGAAATTCAAGATATGATCAAGACAGGG
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